A structural taxonomy of DNA-binding domains

scientific article published on October 1991

A structural taxonomy of DNA-binding domains is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1006104970
P356DOI10.1038/353715A0
P698PubMed publication ID1944532
P5875ResearchGate publication ID21210526

P2093author name stringHarrison SC
P2860cites workProtein-DNA recognitionQ22065421
A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteinsQ24299387
A specific transcription factor that can bind either the 5S RNA gene or 5S RNAQ24612724
Crystallographic analysis of the interaction of the glucocorticoid receptor with DNAQ27651364
Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactionsQ27657540
Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 AQ27660274
The phage 434 Cro/OR1 complex at 2.5 A resolutionQ27660466
High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approachQ27665626
Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complexQ27667167
Three-dimensional solution structure of a single zinc finger DNA-binding domainQ27694563
A protein structural motif that bends DNAQ27694677
Structure of phage 434 Cro protein at 2.35 A resolutionQ27702492
Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressorQ27703629
Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolutionQ27728501
Recognition of a DNA operator by the repressor of phage 434: a view at high resolutionQ27728537
Crystal structure of trp repressor/operator complex at atomic resolutionQ27728594
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteinsQ27860587
Specific DNA binding of GAL4, a positive regulatory protein of yeastQ27939693
Preferential heterodimer formation by isolated leucine zippers from fos and junQ28244227
Solution structure of the DNA-binding domain of the oestrogen receptorQ28263533
Scissors-grip model for DNA recognition by a family of leucine zipper proteinsQ28272775
Evidence that the leucine zipper is a coiled coilQ28284238
Activation of transcription by two factors that bind promoter and enhancer sequences of the human metallothionein gene and SV40Q28288094
Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degreesQ28301788
The DNA binding subunit of NF-kappa B is identical to factor KBF1 and homologous to the rel oncogene productQ29618249
DNA specificity of the bicoid activator protein is determined by homeodomain recognition helix residue 9Q29620728
A protein structure from nuclear magnetic resonance data. lac repressor headpieceQ30406746
Globin gene regulation and switching: circa 1990.Q33352854
Alkylation interference identifies essential DNA contacts for sequence-specific binding of the eukaryotic transcription factor C/EBPQ33596869
Molecular characterization of the GCN4-DNA complexQ33733434
Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA.Q34055138
The operator-binding domain of lambda repressor: structure and DNA recognitionQ34056931
The three-dimensional structure of trp repressor.Q34194439
Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteinsQ37479926
Specific protein binding to far upstream activating sequences in polymerase II promotersQ37672185
GAL4 transcription factor is not a "zinc finger" but forms a Zn(II)2Cys6 binuclear clusterQ37717290
DNA recognition by proteins with the helix-turn-helix motifQ37943261
Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator proteinQ38350353
Expression of simian virus 40 T antigen in Escherichia coli: localization of T-antigen origin DNA-binding domain to within 129 amino acidsQ40128145
The effects of disrupting 5S RNA helical structures on the binding of Xenopus transcription factor IIIA.Q40523369
Cooperative tandem binding of met repressor of Escherichia coliQ41298156
Thermal unfolding studies of a leucine zipper domain and its specific DNA complex: implications for scissor's grip recognitionQ43405608
Design of DNA-binding peptides based on the leucine zipper motifQ43459773
An amino-terminal fragment of GAL4 binds DNA as a dimerQ44240938
Conserved residues make similar contacts in two repressor-operator complexesQ44497319
Structural motif of the GCN4 DNA binding domain characterized by affinity cleavingQ44549750
Secondary structure of a leucine zipper determined by nuclear magnetic resonance spectroscopyQ45126408
Isolation of the gene encoding the yeast TATA binding protein TFIID: a gene identical to the SPT15 suppressor of Ty element insertionsQ45216148
Solution structure of the glucocorticoid receptor DNA-binding domainQ45817037
Tat protein from human immunodeficiency virus forms a metal-linked dimerQ45841752
The yeast cell-type-specific repressor alpha 2 acts cooperatively with a non-cell-type-specific protein.Q45969217
Determinants of target gene specificity for steroid/thyroid hormone receptorsQ46051437
The function and structure of the metal coordination sites within the glucocorticoid receptor DNA binding domainQ46126437
Substituting an alpha-helix switches the sequence-specific DNA interactions of a repressorQ48387712
Structure of Arc repressor in solution: evidence for a family of beta-sheet DNA-binding proteinsQ50464242
The interaction of E. coli IHF protein with its specific binding sites.Q52065221
Base sequence discrimination by zinc-finger DNA-binding domains.Q52447039
The structure of the Antennapedia homeodomain determined by NMR spectroscopy in solution: comparison with prokaryotic repressors.Q52453724
Three-dimensional structure of the E. coli DNA-binding protein FIS.Q53030527
Evidence of changes in protease sensitivity and subunit exchange rate on DNA binding by C/EBP.Q54317767
Altered protein conformation on DNA binding by Fos and Jun.Q54707375
3-A resolution structure of a protein with histone-like properties in prokaryotes.Q55062643
Transcription factor interactions: basics on zippersQ57963223
Folding transition in the DMA-binding domain of GCN4 on specific binding to DNAQ59067060
Three amino acids of the oestrogen receptor are essential to its ability to distinguish an oestrogen from a glucocorticoid-responsive elementQ59070120
A family of immunologically related transcription factors that includes multiple forms of ATF and AP-1Q64379444
Solution structure of a zinc finger domain of yeast ADR1Q67302272
Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactionsQ67962826
Sequence-specific DNA binding by a short peptide dimerQ68893024
Two amino acids within the knuckle of the first zinc finger specify DNA response element activation by the glucocorticoid receptorQ69208244
Trimerization of a yeast transcriptional activator via a coiled-coil motifQ69557498
Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 A resolutionQ69817006
The primary structure of transcription factor TFIIIA has 12 consecutive repeatsQ93573078
P433issue6346
P407language of work or nameEnglishQ1860
P304page(s)715-719
P577publication date1991-10-01
P1433published inNatureQ180445
P1476titleA structural taxonomy of DNA-binding domains
P478volume353

Reverse relations

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Q40791796The activation domain of a basic helix-loop-helix protein is masked by repressor interaction with domains distinct from that required for transcription regulation
Q24317062The adenovirus E1A-regulated transcription factor E4F is generated from the human homolog of nuclear factor phiAP3
Q27732162The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
Q24532803The embryonically active gene, unkempt, of Drosophila encodes a Cys3His finger protein
Q44903082The functional domains of the Drosophila morphogen dorsal: evidence from the analysis of mutants
Q34602847The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.
Q39939676The helix-turn-helix motif of sigma 54 is involved in recognition of the -13 promoter region
Q38323146The mouse Mel-18 "RING-finger" gene: genomic organization, promoter analysis and chromosomal assignment
Q52131484The nsdD gene encodes a putative GATA-type transcription factor necessary for sexual development of Aspergillus nidulans.
Q38360196The plasmid RK2 initiation protein binds to the origin of replication as a monomer
Q39543820The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.
Q48079544The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development
Q34633134The role of a basic amino acid cluster in target site selection and non- specific binding of bZIP peptides to DNA
Q27732551The solution structure of the Mu Ner protein reveals a helix-turn-helix DNA recognition motif
Q27618013The solution structure of the N-terminal zinc finger of GATA-1 reveals a specific binding face for the transcriptional co-factor FOG
Q27733261The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold
Q30193224The structure of the NF-kappa B p50:DNA-complex: a starting point for analyzing the Rel family.
Q36200499The suicidal DNA repair methyltransferases of microbes
Q38327027The yeast alpha 1 and MCM1 proteins bind a single strand of their duplex DNA recognition site
Q37786580Three-Dimensional Structures of DNA-Bound Transcriptional Regulators
Q24562472Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage
Q41687948Transcription factor-based drug design in anticancer drug development
Q44497927Transcription factors. DNA recognition, warts and all
Q34466321Transcription factors: an overview
Q35183885Transcriptional involvement in neurotoxicity
Q36121521Transfer functions of the conjugative integrating element pSAM2 from Streptomyces ambofaciens: characterization of a kil-kor system associated with transfer
Q28208474Translocation t(6;9) in acute non-lymphocytic leukaemia results in the formation of a DEK-CAN fusion gene
Q34298787Transplantation of a 17-amino acid alpha-helical DNA-binding domain into an antibody molecule confers sequence-dependent DNA recognition
Q52867176Two forms of type IV zinc-finger motif and their kingdom-specific distribution between the flora, fauna and fungi.
Q34304197Two regions of GerE required for promoter activation in Bacillus subtilis
Q35533816Understanding DNA-binding specificity by bacteria hybrid selection
Q33187179Using structural motif templates to identify proteins with DNA binding function
Q27748815Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal
Q59023781When the CAP fits bent DNA
Q46433121XopD SUMO protease affects host transcription, promotes pathogen growth, and delays symptom development in xanthomonas-infected tomato leaves
Q48078825Zfp30, a KRAB domain containing zinc finger protein gene, maps to mouse chromosome 7.
Q27940064Zinc co-ordination in the DNA-binding domain of the yeast transcriptional activator PPR1.
Q41018786cAMP response element-binding protein monomers cooperatively assemble to form dimers on DNA.
Q36656635sir2 mutants of Kluyveromyces lactis are hypersensitive to DNA-targeting drugs

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