The physiology of growth arrest: uniting molecular and environmental microbiology

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The physiology of growth arrest: uniting molecular and environmental microbiology is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1047089157
P356DOI10.1038/NRMICRO.2016.107
P698PubMed publication ID27510862

P2093author name stringDianne K Newman
Megan Bergkessel
David W Basta
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A NusE:NusG complex links transcription and translationQ27660765
Structure and function of CarD, an essential mycobacterial transcription factorQ27679098
The crystal structure of Dps, a ferritin homolog that binds and protects DNAQ27749085
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CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistenceQ28486907
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Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.Q54450635
Bacterial nucleoid dynamics: oxidative stress response in Staphylococcus aureus.Q54467053
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Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during TranscriptionQ57895265
Metabolite-based mutualism between Pseudomonas aeruginosa PA14 and Enterobacter aerogenes enhances current generation in bioelectrochemical systemsQ61942144
Nucleoid restructuring in stationary-state bacteriaQ63761948
Purification and properties of the Escherichia coli host factor required for inversion of the G segment in bacteriophage MuQ68917141
Gene expression profile of Vibrio cholerae in the cold stress-induced viable but non-culturable stateQ79946965
DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTPQ80417641
Survival and viability of nonculturableEscherichia coli andVibrio cholerae in the estuarine and marine environmentQ86719054
Microbial persistence and the road to drug resistanceQ38114534
The phenomenon of microbial uncultivabilityQ38134984
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Long-term anaerobic survival of the opportunistic pathogen Pseudomonas aeruginosa via pyruvate fermentationQ38339381
Regulation of Transcript ElongationQ38541517
Growth in studying the cessation of growth.Q39493943
DksA guards elongating RNA polymerase against ribosome-stalling-induced arrestQ39688530
A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coliQ39705576
Microbial physiology and ecology of slow growth.Q40024277
The growth advantage in stationary-phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environmentQ40345503
Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopyQ40773408
Dynamic exometabolome analysis reveals active metabolic pathways in non-replicating mycobacteria.Q40997810
Bridging the gap between viable but non-culturable and antibiotic persistent bacteriaQ41634417
An integrated approach reveals regulatory controls on bacterial translation elongationQ41900904
Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cellsQ41902114
DksA represses ribosomal gene transcription in Pseudomonas aeruginosa by interacting with RNA polymerase on ribosomal promotersQ28493101
A moonlighting enzyme links Escherichia coli cell size with central metabolismQ28534852
On the evolution of bacterial multicellularityQ28650712
Nonreplicating persistence of mycobacterium tuberculosisQ29615312
Bacterial persistence as a phenotypic switchQ29618111
Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistenceQ30495567
Fumarate reductase activity maintains an energized membrane in anaerobic Mycobacterium tuberculosis.Q31036537
Organization of ribosomes and nucleoids in Escherichia coli cells during growth and in quiescenceQ31153623
Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.Q33291043
Heterogeneous rpoS and rhlR mRNA levels and 16S rRNA/rDNA (rRNA gene) ratios within Pseudomonas aeruginosa biofilms, sampled by laser capture microdissectionQ33546954
Control of rRNA synthesis in Escherichia coli: a systems biology approachQ33559589
Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12Q33603147
Phenazine redox cycling enhances anaerobic survival in Pseudomonas aeruginosa by facilitating generation of ATP and a proton-motive forceQ33716449
Genome-Wide Translational Profiling by Ribosome FootprintingQ33718812
DNA protection by stress-induced biocrystallizationQ33867772
Metabolism, cell growth and the bacterial cell cycle.Q33919683
A pause sequence enriched at translation start sites drives transcription dynamics in vivoQ33939698
Current Perspectives on Viable but Non-Culturable (VBNC) Pathogenic BacteriaQ33978716
Mutations enhancing amino acid catabolism confer a growth advantage in stationary phaseQ33992996
Capture of arginine at low concentrations by a marine psychrophilic bacteriumQ34029967
The RpoS-mediated general stress response in Escherichia coliQ34189650
Methanobacillus omelianskii, a symbiotic association of two species of bacteriaQ34236398
Microbial Competition: Escherichia coli Mutants That Take Over Stationary Phase CulturesQ34305902
Sulfonate-sulfur metabolism and its regulation in Escherichia coliQ34323107
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.Q34347048
DNA condensation and self-aggregation of Escherichia coli Dps are coupled phenomena related to the properties of the N-terminusQ34366346
rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responsesQ34434398
The DNA-Binding Protein from Starved Cells (Dps) Utilizes Dual Functions To Defend Cells against Multiple Stresses.Q34487183
The bacterial translation stress response.Q34490409
Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coliQ34555728
The Listeria monocytogenes hibernation-promoting factor is required for the formation of 100S ribosomes, optimal fitness, and pathogenesisQ34853421
HipA-mediated antibiotic persistence via phosphorylation of the glutamyl-tRNA-synthetaseQ35068644
The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analysesQ35162224
Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganismsQ35172620
Degradation of stable RNA in bacteriaQ35207031
Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolismQ35549117
Role of the Escherichia coli FadR regulator in stasis survival and growth phase-dependent expression of the uspA, fad, and fab genesQ35616465
Effects of nutrition and growth rate on Lrp levels in Escherichia coliQ35617590
Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitationQ35852947
Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active populationQ35867693
Stationary-phase physiologyQ35919834
Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide FormationQ36002677
Defining bacterial regulons using ChIP-seqQ36079824
Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis LungsQ36109214
Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arraysQ36353132
Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coliQ36365259
Regulation of Bacterial DNA Packaging in Early Stationary Phase by Competitive DNA Binding of Dps and IHFQ36367267
Long-term survival during stationary phase: evolution and the GASP phenotypeQ36369839
Evolution of microbial diversity during prolonged starvationQ36456226
Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputumQ36483152
SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosaQ36563139
Effect of nutrient deprivation on lipid, carbohydrate, DNA, RNA, and protein levels in Vibrio choleraeQ36667590
Starvation-survival patterns of sixteen freshly isolated open-ocean bacteria.Q36713457
High-Throughput Single-Cell Cultivation on Microfluidic Streak PlatesQ36728085
The molecular basis of selective promoter activation by the sigmaS subunit of RNA polymerase.Q36736448
Adenylate energy charge in Escherichia coli during growth and starvationQ36774259
Multifunctional essentiality of succinate metabolism in adaptation to hypoxia in Mycobacterium tuberculosisQ36782015
Divergent protein motifs direct elongation factor P-mediated translational regulation in Salmonella enterica and Escherichia coliQ36800967
Competitive fitness during feast and famine: how SOS DNA polymerases influence physiology and evolution in Escherichia coliQ36878608
The protonmotive force is required for maintaining ATP homeostasis and viability of hypoxic, nonreplicating Mycobacterium tuberculosisQ36954404
Initiation of ribosome degradation during starvation in Escherichia coliQ37168958
Redox-sensitive green fluorescent protein: probes for dynamic intracellular redox responses. A reviewQ37373607
Direct observation of single stationary-phase bacteria reveals a surprisingly long period of constant protein production activityQ37474918
RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.Q37619861
Bacterial nucleoid-associated proteins, nucleoid structure and gene expressionQ37688895
Studying bacterial transcriptomes using RNA-seqQ37796158
Recent progress in Bacillus subtilis sporulationQ37957161
Regulating DNA replication in bacteriaQ38087526
P433issue9
P407language of work or nameEnglishQ1860
P1104number of pages14
P304page(s)549-562
P577publication date2016-08-01
P1433published inNature Reviews MicrobiologyQ1071797
P1476titleThe physiology of growth arrest: uniting molecular and environmental microbiology
P478volume14

Reverse relations

cites work (P2860)
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