Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli

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Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli is …
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scholarly articleQ13442814

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P356DOI10.1534/GENETICS.115.178970
P932PMC publication ID4676537
P698PubMed publication ID26500258

P2093author name stringP J Hastings
Susan M Rosenberg
David Bates
David Magnan
Jessica M Moore
Ana K Mojica
María Angélica Bravo Núñez
P2860cites workConstruction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collectionQ22122301
Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assemblyQ24684156
Adaptive amplification and point mutation are independent mechanisms: evidence for various stress-inducible mutation mechanismsQ24796250
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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Atypical Role for PhoU in Mutagenic Break Repair under Stress in Escherichia coliQ28547150
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On the mechanism of gene amplification induced under stress in Escherichia coliQ33239373
The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS inductionQ33405760
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoidQ33638020
Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coliQ33758245
Spontaneous DNA breakage in single living Escherichia coli cellsQ33796363
Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutationQ33886793
The SOS response regulates adaptive mutationQ33903483
Mycobacterium tuberculosis nucleoid-associated DNA-binding protein H-NS binds with high-affinity to the Holliday junction and inhibits strand exchange promoted by RecA proteinQ33922365
SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplificationQ33953638
Adaptive reversion of a frameshift mutation in Escherichia coliQ33958142
Opposing roles of the holliday junction processing systems of Escherichia coli in recombination-dependent adaptive mutationQ33966750
The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coliQ34017416
Error‐prone DNA polymerase IV is controlled by the stress‐response sigma factor, RpoS, in Escherichia coliQ34049897
Separate DNA Pol II- and Pol IV-dependent pathways of stress-induced mutation during double-strand-break repair in Escherichia coli are controlled by RpoS.Q34119281
The evolution of stress-induced hypermutation in asexual populationsQ34285727
Evolving responsively: adaptive mutationQ34297067
Anti-adaptors provide multiple modes for regulation of the RssB adaptor proteinQ34392954
Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific mannerQ34531199
E. coli Fis protein insulates the cbpA gene from uncontrolled transcriptionQ34558017
Increased episomal replication accounts for the high rate of adaptive mutation in recD mutants of Escherichia coliQ34606847
General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coliQ34643555
The Fis protein has a stimulating role in initiation of replication in Escherichia coli in vivoQ35073122
Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coliQ35170976
Adaptive mutation and amplification in Escherichia coli: two pathways of genome adaptation under stressQ35811218
Replication forks stalled at ultraviolet lesions are rescued via RecA and RuvABC protein-catalyzed disintegration in Escherichia coliQ35839032
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.Q35906075
Lucigenin luminescence as a measure of intracellular superoxide dismutase activity in Escherichia coliQ36072094
Control of Escherichia coli superoxide dismutase (sodA and sodB) genes by the ferric uptake regulation (fur) locusQ36159976
Stress-induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicineQ36496909
The novel Hha/YmoA family of nucleoid-associated proteins: use of structural mimicry to modulate the activity of the H-NS family of proteinsQ36658260
In vivo studies of temperature-sensitive recB and recC mutantsQ36761335
Stress-induced mutagenesis in bacteria.Q36961683
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coliQ37025967
A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.Q37055071
Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependenceQ37096423
DinB upregulation is the sole role of the SOS response in stress-induced mutagenesis in Escherichia coliQ37173424
Stress-induced beta-lactam antibiotic resistance mutation and sequences of stationary-phase mutations in the Escherichia coli chromosome.Q37355812
Oxygen-dependent mutagenesis in Escherichia coli lacking superoxide dismutaseQ37405894
iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitroQ37508279
DnaA structure, function, and dynamics in the initiation at the chromosomal originQ37520018
H-NS-like nucleoid-associated proteins, mobile genetic elements and horizontal gene transfer in bacteria.Q38226682
The nucleoid-associated protein StpA binds curved DNA, has a greater DNA-binding affinity than H-NS and is present in significant levels in hns mutantsQ38302753
Expression of csp genes in E. coli K-12 in defined rich and defined minimal media during normal growth, and after cold-shockQ38306245
A novel protein binds a key origin sequence to block replication of an E. coli minichromosomeQ38338681
Differential binding profiles of StpA in wild-type and h-ns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis.Q38357348
Overcoming H-NS-mediated transcriptional silencing of horizontally acquired genes by the PhoP and SlyA proteins in Salmonella entericaQ39323797
Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of sigma S and many sigma S-dependent genes in Escherichia coliQ39474355
The Escherichia coli Fis Protein Stimulates Bacteriophage λ Integrative Recombination In VitroQ39749055
Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coliQ39839306
E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNAQ40237225
A cluster of constitutive mutations affecting the C-terminus of the redox-sensitive SoxR transcriptional activatorQ40411018
The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor.Q40872265
Involvement of the global regulator H-NS in the survival of Escherichia coli in stationary phaseQ41873944
The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutationQ41996473
Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coliQ42113114
Identity and function of a large gene network underlying mutagenic repair of DNA breaksQ42969505
The H-NS-like protein StpA represses the RpoS (sigma 38) regulon during exponential growth of Salmonella Typhimurium.Q43258215
IciA protein, a specific inhibitor of initiation of Escherichia coli chromosomal replicationQ46307868
Selective repression by Fis and H-NS at the Escherichia coli dps promoter.Q46386594
A role for topoisomerase III in a recombination pathway alternative to RuvABC.Q46704758
Interplay between global regulators of Escherichia coli: effect of RpoS, Lrp and H-NS on transcription of the gene osmC.Q47848431
A novel binding protein of the origin of the Escherichia coli chromosomeQ48129001
The ferritin-like protein Dps protects Salmonella enterica serotype Enteritidis from the Fenton-mediated killing mechanism of bactericidal antibioticsQ50043758
Adaptive amplification: an inducible chromosomal instability mechanismQ50117945
Resistance to environmental stress requires the RNA chaperones CspC and CspE.Q50913509
Stress-induced mutagenesis and complex adaptation.Q51052567
Fine-tuned growth phase control of dps, encoding a DNA protection protein, by FIS and H-NS.Q53481360
CspC regulates rpoS transcript levels and complements hfq deletions.Q54382552
Escherichia coli Dps interacts with DnaA protein to impede initiation: a model of adaptive mutation.Q54426328
Escherichia coli DnaA interacts with HU in initiation at the E. coli replication origin.Q54428283
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.Q54478818
Recombination in adaptive mutation.Q54635736
Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoidQ74187557
Fur-mediated transcriptional and post-transcriptional regulation of FeSOD expression in Escherichia coliQ77465422
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)1349-1362
P577publication date2015-10-23
P1433published inGeneticsQ3100575
P1476titleRoles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli
P478volume201

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cites work (P2860)
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Q38670044Persistent damaged bases in DNA allow mutagenic break repair in Escherichia coli
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Q91807373The Bacterial Amyloid-Like Hfq Promotes In Vitro DNA Alignment
Q38924195The physiology of growth arrest: uniting molecular and environmental microbiology

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