Adaptive amplification and point mutation are independent mechanisms: evidence for various stress-inducible mutation mechanisms (scientific article)

Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA

Q24628966

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

Q27860842

The origin of mutants

Q28288915

Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli

Q28364148

FACS-optimized mutants of the green fluorescent protein (GFP)

Q29547322

Mechanisms of stationary phase mutation: a decade of adaptive mutation

Q33847662

Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation

Q33886793

The SOS response regulates adaptive mutation

Q33903483

Induction of DNA amplification in the Bacillus subtilis chromosome

Q33937598

SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification

Q33953638

Adaptive reversion of a frameshift mutation in Escherichia coli

Q33958142

Population dynamics of a Lac- strain of Escherichia coli during selection for lactose utilization

Q33963607

Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli.

Q33966542

Opposing roles of the holliday junction processing systems of Escherichia coli in recombination-dependent adaptive mutation

Q33966750

Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification

Q34012598

Error‐prone DNA polymerase IV is controlled by the stress‐response sigma factor, RpoS, in Escherichia coli

Q34049897

Evolving responsively: adaptive mutation

Q34297067

Phage lambda red-mediated adaptive mutation.

Q34313875

Transient and heritable mutators in adaptive evolution in the lab and in nature

Q34603730

Increased episomal replication accounts for the high rate of adaptive mutation in recD mutants of Escherichia coli

Q34606847

Some features of the mutability of bacteria during nonlethal selection

Q34608581

Regulating general mutation rates: examination of the hypermutable state model for Cairnsian adaptive mutation.

Q34617476

General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli

Q34643555

In pursuit of a molecular mechanism for adaptive gene amplification

Q35037445

The dinB operon and spontaneous mutation in Escherichia coli

Q35098519

Mismatch repair protein MutL becomes limiting during stationary-phase mutation

Q35190848

Nonadaptive mutations occur on the F' episome during adaptive mutation conditions in Escherichia coli

Q35620439

Adaptive mutation and amplification in Escherichia coli: two pathways of genome adaptation under stress

Q35811218

Adaptive mutation: how growth under selection stimulates Lac(+) reversion by increasing target copy number

Q35893213

Spontaneous and UV-induced mutations in Escherichia coli K-12 strains with altered or absent DNA polymerase I.

Q36176656

The role of transient hypermutators in adaptive mutation in Escherichia coli

Q36384221

7 Uses of transposons with emphasis on Tn10

Q36439570

A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.

Q37055071

Instability of repetitive DNA sequences: the role of replication in multiple mechanisms

Q37096065

Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependence

Q37096423

Polymerases leave fingerprints: analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation

Q37424859

H-NS and RpoS regulate emergence of Lac Ara+ mutants of Escherichia coli MCS2.

Q38344584

Different spectra of stationary-phase mutations in early-arising versus late-arising mutants of Pseudomonas putida: involvement of the DNA repair enzyme MutY and the stationary-phase sigma factor RpoS.

Q39680847

Conditional Lethality of recA and recB Derivatives of a Strain of Escherichia coli K-12 with a Temperature-Sensitive Deoxyribonucleic Acid Polymerase I

Q40098137

Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system: stress responses producing genetic change

Q41073516

Rebuttal: growth under selection stimulates Lac(+) reversion (Roth and Andersson).

Q42793523

Rebuttal: adaptive point mutation (Rosenberg and Hastings).

Q42793640

The TGV transgenic vectors for single-copy gene expression from the Escherichia coli chromosome

Q43694249

The effect of genomic position on reversion of a lac frameshift mutation (lacIZ33) during non-lethal selection (adaptive mutation).

Q43993329

Stress-induced mutagenesis in bacteria

Q44459277

Adaptive amplification: an inducible chromosomal instability mechanism

Q50117945

Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon

Q50128814

P275

Creative Commons Attribution 4.0 International

copyrighted

issue

language of work or name

English

Q1860

P304

page(s)

e399

P577

publication date

2004-12-01

P1433

published in

PLOS Biology

Q1771695

P1476

title

Adaptive amplification and point mutation are independent mechanisms: evidence for various stress-inducible mutation mechanisms

P478

volume

Reverse relations

cites work (P2860)

Q42380896	A mechanism of transposon-mediated directed mutation
Q33404060	A microhomology-mediated break-induced replication model for the origin of human copy number variation
Q33319652	A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase
Q40310626	Adaptive Evolution Hotspots at the GC-Extremes of the Human Genome: Evidence for Two Functionally Distinct Pathways of Positive Selection
Q36905570	Adaptive amplification
Q33834997	Alterations in DNA replication and histone levels promote histone gene amplification in Saccharomyces cerevisiae
Q34599104	Amplification of lac cannot account for adaptive mutation to Lac+ in Escherichia coli.
Q24647468	An SOS-regulated type 2 toxin-antitoxin system
Q36477619	Autosomal-dominant microtia linked to five tandem copies of a copy-number-variable region at chromosome 4p16
Q33594339	Competition of Escherichia coli DNA polymerases I, II and III with DNA Pol IV in stressed cells
Q36961674	Controlling mutation: intervening in evolution as a therapeutic strategy
Q26825267	Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition
Q36895777	Double trouble: medical implications of genetic duplication and amplification in bacteria
Q34195488	Effect of growth under selection on appearance of chromosomal mutations in Salmonella enterica
Q42719517	Effect of translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium
Q28757092	Environmental exposures and gene regulation in disease etiology
Q36080789	Experimental Evolution Identifies Vaccinia Virus Mutations in A24R and A35R That Antagonize the Protein Kinase R Pathway and Accompany Collapse of an Extragenic Gene Amplification
Q46328071	Fitness-dependent mutation rates in finite populations
Q33256435	Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts.
Q51753273	Genome-wide high-frequency non-Mendelian loss of heterozygosity in rice.
Q34013646	Global chromosomal structural instability in a subpopulation of starving Escherichia coli cells
Q42325513	Gross chromosomal rearrangement mediated by DNA replication in stressed cells: evidence from Escherichia coli
Q33285899	Hin-mediated DNA knotting and recombining promote replicon dysfunction and mutation
Q42969505	Identity and function of a large gene network underlying mutagenic repair of DNA breaks
Q35170976	Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli
Q39410967	Indigenous and environmental modulation of frequencies of mutation in Lactobacillus plantarum
Q22065788	Mechanisms of gene duplication and amplification
Q35125285	Multiple pathways of selected gene amplification during adaptive mutation.
Q35869358	Mutation as a stress response and the regulation of evolvability
Q33239373	On the mechanism of gene amplification induced under stress in Escherichia coli
Q47558874	Oxygen and RNA in stress-induced mutation.
Q38670044	Persistent damaged bases in DNA allow mutagenic break repair in Escherichia coli
Q36766892	Programmed genetic instability: a tumor-permissive mechanism for maintaining the evolvability of higher species through methylation-dependent mutation of DNA repair genes in the male germ line
Q36305368	Rapid changes in plant genomes
Q34311891	Ribonuclease E modulation of the bacterial SOS response
Q34470485	Roles of E. coli double-strand-break-repair proteins in stress-induced mutation
Q36365259	Roles of Nucleoid-Associated Proteins in Stress-Induced Mutagenic Break Repair in Starving Escherichia coli
Q50186955	Selection-Enhanced Mutagenesis of lac Genes Is Due to Their Co-amplification with dinB Encoding an Error-Prone DNA Polymerase
Q34119281	Separate DNA Pol II- and Pol IV-dependent pathways of stress-induced mutation during double-strand-break repair in Escherichia coli are controlled by RpoS.
Q34514283	Single-strand-specific exonucleases prevent frameshift mutagenesis by suppressing SOS induction and the action of DinB/DNA polymerase IV in growing cells
Q36018297	Slow-growing cells within isogenic populations have increased RNA polymerase error rates and DNA damage
Q37355812	Stress-induced beta-lactam antibiotic resistance mutation and sequences of stationary-phase mutations in the Escherichia coli chromosome.
Q36961683	Stress-induced mutagenesis in bacteria.
Q36496909	Stress-induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicine
Q38541782	The Origin of Mutants Under Selection: How Natural Selection Mimics Mutagenesis (Adaptive Mutation)
Q34017416	The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli
Q41445233	Transcriptional de-repression and Mfd are mutagenic in stressed Bacillus subtilis cells
Q37976150	What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli?

P356	DOI	10.1371/JOURNAL.PBIO.0020399
P8608	Fatcat ID	release_mocuspjkznccvnphroai2jqkta
P932	PMC publication ID	529313
P698	PubMed publication ID	15550983
P5875	ResearchGate publication ID	8176339