| P50 | author | Ruy Jauregui | Q52567333 |
| | Howard Junca | Q41783060 |
| P2093 | author name string | Dietmar H Pieper | |
| | Ramiro Vilchez-Vargas | |
| | Márcia Duarte | |
| P2860 | cites work | Annotation error in public databases: misannotation of molecular function in enzyme superfamilies | Q21145347 |
| | Phylogenomic inference of protein molecular function: advances and challenges | Q22066096 |
| | The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium | Q22066260 |
| | Purification and characterization of dichloromuconate cycloisomerase from Alcaligenes eutrophus JMP 134 | Q24527355 |
| | Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily | Q24548519 |
| | Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis | Q24549124 |
| | Bacterial evolution | Q24634394 |
| | The Pfam protein families database | Q24644670 |
| | big data: The future of biocuration | Q24650969 |
| | MetaRouter: bioinformatics for bioremediation | Q24795279 |
| | RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs | Q24796621 |
| | The University of Minnesota Biocatalysis/Biodegradation Database: the first decade | Q25255179 |
| | Basic local alignment search tool | Q25938991 |
| | The neighbor-joining method: a new method for reconstructing phylogenetic trees | Q25939010 |
| | Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions | Q27619532 |
| | MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability | Q27860817 |
| | MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods | Q27860929 |
| | Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies | Q28200745 |
| | Biodegradation of aromatic compounds by Escherichia coli | Q28208239 |
| | Phylogenomics of type II DNA topoisomerases | Q28210906 |
| | Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis | Q28266110 |
| | Unbiased estimation of the rates of synonymous and nonsynonymous substitution | Q28266175 |
| | Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase | Q28379059 |
| | Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases | Q28497358 |
| | The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida | Q29346848 |
| | SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building | Q29547665 |
| | The carbohydrate-active enzymes database (CAZy) in 2013 | Q29617118 |
| | CDD: conserved domains and protein three-dimensional structure | Q30424248 |
| | Evidence that pcpA encodes 2,6-dichlorohydroquinone dioxygenase, the ring cleavage enzyme required for pentachlorophenol degradation in Sphingomonas chlorophenolica strain ATCC 39723. | Q52571249 |
| | Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7. | Q54457140 |
| | Phn and Nag-like dioxygenases metabolize polycyclic aromatic hydrocarbons in Burkholderia sp. C3 | Q83519799 |
| | Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries | Q31039801 |
| | Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7. | Q32076788 |
| | OxDBase: a database of oxygenases involved in biodegradation. | Q33437226 |
| | PathPred: an enzyme-catalyzed metabolic pathway prediction server | Q33569917 |
| | The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell | Q33578905 |
| | Aromatic hydrocarbon dioxygenases in environmental biotechnology | Q33941468 |
| | Phylogenomics: intersection of evolution and genomics | Q33966569 |
| | Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. | Q33984916 |
| | Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. | Q34181838 |
| | Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. | Q34351775 |
| | Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts | Q34528388 |
| | Evolution of the soluble diiron monooxygenases | Q35556394 |
| | Evolutionary relationships among extradiol dioxygenases | Q35614251 |
| | Three different 2,3-dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6. | Q36103584 |
| | Bionemo: molecular information on biodegradation metabolism | Q37202791 |
| | FunGene: the functional gene pipeline and repository | Q37207879 |
| | Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes. | Q37791221 |
| | Microbial degradation of chloroaromatics: use of the meta-cleavage pathway for mineralization of chlorobenzene | Q38502602 |
| | A phylogenomic approach to microbial evolution | Q38659101 |
| | The Lipase Engineering Database: a navigation and analysis tool for protein families | Q39790193 |
| | BSD: the Biodegradative Strain Database | Q39790274 |
| | Naphthalene degradation via salicylate and gentisate by Rhodococcus sp. strain B4. | Q39893952 |
| | Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6. | Q41073376 |
| | Metabolism of Dibenzofuran by Pseudomonas sp. Strain HH69 and the Mixed Culture HH27. | Q41808976 |
| | Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases | Q42424477 |
| | The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation | Q42556559 |
| | Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C. | Q42635060 |
| | Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme | Q42657293 |
| | Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2. | Q44301516 |
| | The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions | Q44875081 |
| | Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system | Q45286348 |
| | Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment | Q46878623 |
| | Conserved and hybrid meta-cleavage operons from PAH-degrading Burkholderia RP007. | Q47937589 |
| | The nucleotide sequence of the Tn5271 3-chlorobenzoate 3,4-dioxygenase genes (cbaAB) unites the class IA oxygenases in a single lineage | Q48075298 |
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P921 | main subject | database | Q8513 |
| | phylogenomics | Q3381973 |
| P304 | page(s) | bau118 | |
| P577 | publication date | 2014-12-01 | |
| P1433 | published in | Database | Q5227381 |
| P1476 | title | AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics | |
| P478 | volume | 2014 | |