Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana

scientific article published on 27 July 2015

Distinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1111/TPJ.12943
P698PubMed publication ID26216451
P5875ResearchGate publication ID280536094

P50authorJoanna KufelQ72095031
Hélène ZuberQ92830713
Paweł SikorskiQ57549109
Dominique GagliardiQ57640038
P2093author name stringLucas Philippe
Heike Lange
Jean Canaday
François M Sement
P2860cites workA new yeast poly(A) polymerase complex involved in RNA quality controlQ21146099
Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNAQ24294915
Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'Q24305376
Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells.Q24309380
The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3LQ24317597
Dis3-like 1: a novel exoribonuclease associated with the human exosomeQ24317743
The small-subunit processome is a ribosome assembly intermediateQ24321301
Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAsQ24338738
Degradation of ribosomal RNA precursors by the exosomeQ24515376
Nob1p is required for cleavage of the 3' end of 18S rRNAQ24554334
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegansQ24569672
Diverse diseases from a ubiquitous process: the ribosomopathy paradoxQ27694538
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymeraseQ27932117
RNA degradation by the exosome is promoted by a nuclear polyadenylation complexQ27932438
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesisQ27937306
Gradual processing of the ITS1 from the nucleolus to the cytoplasm during synthesis of the human 18S rRNAQ28114779
Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processingQ28115038
A 'garbage can' for ribosomes: how eukaryotes degrade their ribosomesQ28271224
The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thalianaQ28542463
A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28-let-7 pathwayQ28587323
Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in ArabidopsisQ28755268
Phylogeny.fr: robust phylogenetic analysis for the non-specialistQ29547666
GATEWAY vectors for Agrobacterium-mediated plant transformationQ29615003
Genome-wide insertional mutagenesis of Arabidopsis thalianaQ29617345
Yeast pre-rRNA processing and modification occur cotranscriptionallyQ30436160
The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillanceQ30440025
Methylation protects microRNAs from an AGO1-associated activity that uridylates 5' RNA fragments generated by AGO1 cleavageQ33674380
Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells.Q33688962
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.Q33734348
Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.Q34020217
Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypesQ34115546
A MicroRNA precursor surveillance system in quality control of MicroRNA synthesisQ34217041
Bypassing the rRNA processing endonucleolytic cleavage at site A2 in Saccharomyces cerevisiae.Q34363111
Uridylation by TUT4 and TUT7 marks mRNA for degradationQ34452309
Analysis of two human pre-ribosomal factors, bystin and hTsr1, highlights differences in evolution of ribosome biogenesis between yeast and mammals.Q34474064
Arabidopsis protein arginine methyltransferase 3 is required for ribosome biogenesis by affecting precursor ribosomal RNA processing.Q34526664
40S ribosome biogenesis co-factors are essential for gametophyte and embryo developmentQ34575323
atBRX1-1 and atBRX1-2 are involved in an alternative rRNA processing pathway in Arabidopsis thalianaQ35113576
Deep sequencing shows multiple oligouridylations are required for 3' to 5' degradation of histone mRNAs on polyribosomesQ35127551
An overview of pre-ribosomal RNA processing in eukaryotesQ35180630
PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motifQ35182680
The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradationQ35954366
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thalianaQ36540208
Uridylation of miRNAs by hen1 suppressor1 in Arabidopsis.Q36639529
A plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitroQ36700946
Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plantsQ36783661
Uridylation prevents 3' trimming of oligoadenylated mRNAsQ37080390
Arabidopsis AtRRP44A is the functional homolog of Rrp44/Dis3, an exosome component, is essential for viability and is required for RNA processing and degradationQ37288767
A role for the ribosome in developmentQ37589088
Polyadenylation-assisted RNA degradation processes in plantsQ37589095
3' Uridylation and the regulation of RNA function in the cytoplasmQ37775687
Mapping the cleavage sites on mammalian pre-rRNAs: where do we stand?Q37985189
Growth control and ribosomopathies.Q38089397
Transcript-based cloning of RRP46, a regulator of rRNA processing and R gene-independent cell death in barley-powdery mildew interactionsQ38508542
The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathwayQ38678172
Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnoverQ40709146
Interaction profiling identifies the human nuclear exosome targeting complexQ41412984
Separation of long RNA by agarose-formaldehyde gel electrophoresis.Q41899613
The evolution of the ribosome biogenesis pathway from a yeast perspectiveQ41941227
The final step in 5.8S rRNA processing is cytoplasmic in Saccharomyces cerevisiaeQ41977961
MTR4, a putative RNA helicase and exosome co-factor, is required for proper rRNA biogenesis and development in Arabidopsis thalianaQ42605427
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse geneticsQ44751259
Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 proteinQ44989843
The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factorsQ45345716
A poly(A)-specific ribonuclease directly regulates the poly(A) status of mitochondrial mRNA in ArabidopsisQ46052396
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressorsQ46907096
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptomeQ48075748
Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.Q51753322
Identification of protein factors and U3 snoRNAs from aBrassica oleraceaRNP complex involved in the processing of pre-rRNAQ59291042
P433issue6
P921main subjectArabidopsis thalianaQ158695
P304page(s)991-1004
P577publication date2015-07-27
P1433published inThe Plant JournalQ15766987
P1476titleDistinct 18S rRNA precursors are targets of the exosome complex, the exoribonuclease RRP6L2 and the terminal nucleotidyltransferase TRL in Arabidopsis thaliana
P478volume83

Reverse relations

cites work (P2860)
Q47609896An Arabidopsis divergent pumilio protein, APUM24, is essential for embryogenesis and required for faithful pre-rRNA processing
Q49990454Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing
Q39317738Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases.
Q36177271Dual Role of a SAS10/C1D Family Protein in Ribosomal RNA Gene Expression and Processing Is Essential for Reproduction in Arabidopsis thaliana
Q66317406Elimination of 01/A'-A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3.
Q38812657In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings
Q47162101Polycytidylation of mitochondrial mRNAs in Chlamydomonas reinhardtii
Q47279037RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities
Q58611904RNA uridylation and decay in plants
Q52725615Ribosomal RNA Biogenesis and Its Response to Chilling Stress in Oryza sativa.
Q58569553Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
Q36875263Widespread 3'-end uridylation in eukaryotic RNA viruses

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