The AAA+ ATPase p97, a cellular multitool

scientific article published on 17 August 2017

The AAA+ ATPase p97, a cellular multitool is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1042/BCJ20160783
P932PMC publication ID5559722
P698PubMed publication ID28819009

P2093author name stringLasse Stach
Paul S Freemont
P2860cites workSelective inhibition of p97 by chlorinated analogues of dehydrocurvularinQ33785301
An abundant and ubiquitous homo-oligomeric ring-shaped ATPase particle related to the putative vesicle fusion proteins Sec18p and NSF.Q33920064
Critical role of VCP/p97 in the pathogenesis and progression of non-small cell lung carcinomaQ34117172
Normalization of nomenclature for peptide motifs as ligands of modular protein domainsQ34120337
Lys11- and Lys48-linked ubiquitin chains interact with p97 during endoplasmic-reticulum-associated degradationQ34159592
U box proteins as a new family of ubiquitin-protein ligasesQ24291397
The tumor autocrine motility factor receptor, gp78, is a ubiquitin protein ligase implicated in degradation from the endoplasmic reticulumQ24291942
The ubiquitin ligase HACE1 regulates Golgi membrane dynamics during the cell cycleQ24293051
Ubiquitin-dependent intramembrane rhomboid protease promotes ERAD of membrane proteinsQ24293182
Ubiquitin is phosphorylated by PINK1 to activate parkinQ24296532
Human Fas-associated factor 1, interacting with ubiquitinated proteins and valosin-containing protein, is involved in the ubiquitin-proteasome pathwayQ24297296
OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysisQ24297538
Valosin-containing protein (VCP/p97) is an activator of wild-type ataxin-3Q24298529
Human HRD1 is an E3 ubiquitin ligase involved in degradation of proteins from the endoplasmic reticulumQ24298901
RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assemblyQ24300428
Regulation of retrotranslocation by p97-associated deubiquitinating enzyme ataxin-3Q24304415
A ubiquitin ligase complex assembles linear polyubiquitin chainsQ24305030
The UBXN1 protein associates with autoubiquitinated forms of the BRCA1 tumor suppressor and inhibits its enzymatic functionQ24305086
An arginine/lysine-rich motif is crucial for VCP/p97-mediated modulation of ataxin-3 fibrillogenesisQ24307381
Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chainsQ24307429
Spatial regulation of UBXD8 and p97/VCP controls ATGL-mediated lipid droplet turnoverQ24307768
UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnoverQ24310742
The UBX protein SAKS1 negatively regulates endoplasmic reticulum-associated degradation and p97-dependent degradationQ24313311
Ubiquitination directly enhances activity of the deubiquitinating enzyme ataxin-3Q24318431
The otubain YOD1 is a deubiquitinating enzyme that associates with p97 to facilitate protein dislocation from the ERQ24323509
Involvement of valosin-containing protein, an ATPase Co-purified with IkappaBalpha and 26 S proteasome, in ubiquitin-proteasome-mediated degradation of IkappaBalphaQ24329214
Recruitment of the p97 ATPase and ubiquitin ligases to the site of retrotranslocation at the endoplasmic reticulum membraneQ24336904
Direct binding of ubiquitin conjugates by the mammalian p97 adaptor complexes, p47 and Ufd1-Npl4.Q24539071
Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modificationsQ24608343
VCIP135, a novel essential factor for p97/p47-mediated membrane fusion, is required for Golgi and ER assembly in vivoQ24673098
Enhanced protein degradation by branched ubiquitin chains.Q33637926
Ataxin-3 interactions with rad23 and valosin-containing protein and its associations with ubiquitin chains and the proteasome are consistent with a role in ubiquitin-mediated proteolysisQ24682823
Ring of Change: CDC48/p97 Drives Protein Dynamics at ChromatinQ26747328
Drugging the undruggables: exploring the ubiquitin system for drug developmentQ26752823
Ubiquitin chain diversity at a glanceQ26767117
ESCRT-III controls nuclear envelope reformationQ27316488
Structure of the AAA ATPase p97Q27629334
Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repairQ27634006
The crystal structure of murine p97/VCP at 3.6AQ27642642
Detailed structural insights into the p97-Npl4-Ufd1 interfaceQ27644733
Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradationQ27644749
Structure and Function of the PLAA/Ufd3-p97/Cdc48 ComplexQ27658051
WD40 Repeat Propellers Define a Ubiquitin-Binding Domain that Regulates Turnover of F Box ProteinsQ27665843
Hierarchical binding of cofactors to the AAA ATPase p97Q27668175
Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domainQ27670731
The Structural and Functional Basis of the p97/Valosin-containing Protein (VCP)-interacting Motif (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE N-TERMINAL DOMAIN OF p97Q27673802
Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIPQ27680404
Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP)Q27682050
Binding of OTULIN to the PUB domain of HOIP controls NF-κB signalingQ27690030
Structural Basis of ATP Hydrolysis and Intersubunit Signaling in the AAA+ ATPase p97Q27703264
Characterization of an Additional Binding Surface on the p97 N-Terminal Domain Involved in Bipartite Cofactor InteractionsQ27703265
2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibitionQ27703745
Structural insights into the interaction of p97 N-terminus domain and VBM in rhomboid protease, RHBDL4Q27718850
Key steps in ERAD of luminal ER proteins reconstituted with purified componentsQ27929992
Doa1 is a Cdc48 adapter that possesses a novel ubiquitin binding domainQ27930054
Hrd1p/Der3p is a membrane-anchored ubiquitin ligase required for ER-associated degradation.Q27931418
The Hrd1p ligase complex forms a linchpin between ER-lumenal substrate selection and Cdc48p recruitmentQ27932818
A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly.Q27935265
Role of a ribosome-associated E3 ubiquitin ligase in protein quality controlQ27936843
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.Q27937465
Membrane fusion and the cell cycle: Cdc48p participates in the fusion of ER membranesQ27938702
Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosomeQ27939735
Ubx2 links the Cdc48 complex to ER-associated protein degradationQ27939739
Mutations in the Human AAA+ Chaperone p97 and Related DiseasesQ28080241
Molecular Mechanism of Substrate Processing by the Cdc48 ATPase Complex.Q51018275
Crystal structures of the UBX domain of human UBXD7 and its complex with p97 ATPase.Q51105472
Structural insights into the interaction of human p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease.Q51420255
Evaluating p97 Inhibitor Analogues for Potency against p97-p37 and p97-Npl4-Ufd1 Complexes.Q53161512
Mutations in p97/VCP induce unfolding activity.Q53566724
Ataxin-3 binds VCP/p97 and regulates retrotranslocation of ERAD substrates.Q53613309
Polyubiquitylation drives replisome disassembly at the termination of DNA replicationQ57755271
Ubiquitous soluble Mg2+-ATPase complexQ58438730
The Polycomb Protein Ring1B Generates Self Atypical Mixed Ubiquitin Chains Required for Its In Vitro Histone H2A Ligase ActivityQ62125897
A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targetingQ81277350
Alkylsulfanyl-1,2,4-triazoles, a new class of allosteric valosine containing protein inhibitors. Synthesis and structure-activity relationshipsQ85661492
The VCP/p97 system at a glance: connecting cellular function to disease pathogenesis.Q34178673
The ubiquitin-selective segregase VCP/p97 orchestrates the response to DNA double-strand breaks.Q34226618
The resistance mechanisms of proteasome inhibitor bortezomibQ34256126
p97 complexes as signal integration hubs.Q34303052
Identification of Ubxd8 protein as a sensor for unsaturated fatty acids and regulator of triglyceride synthesisQ34411329
Mechanistic insights into the recycling machine of the SNARE complexQ35058666
Ubiquitin acetylation inhibits polyubiquitin chain elongationQ35084540
Derlin-1 is a rhomboid pseudoprotease required for the dislocation of mutant α-1 antitrypsin from the endoplasmic reticulumQ35381401
Proteotoxic crisis, the ubiquitin-proteasome system, and cancer therapyQ35408665
Cell cycle regulation of VCIP135 deubiquitinase activity and function in p97/p47-mediated Golgi reassembly.Q35717827
The ubiquitin regulatory X (UBX) domain-containing protein TUG regulates the p97 ATPase and resides at the endoplasmic reticulum-golgi intermediate compartmentQ35838940
Golgi reassembly after mitosis: the AAA family meets the ubiquitin familyQ36118875
CDC-48/p97 coordinates CDT-1 degradation with GINS chromatin dissociation to ensure faithful DNA replicationQ36192735
Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functionsQ36215827
gp78 functions downstream of Hrd1 to promote degradation of misfolded proteins of the endoplasmic reticulumQ36337039
Roles of p97-associated deubiquitinases in protein quality control at the endoplasmic reticulumQ36355930
Structure-Activity Study of Bioisosteric Trifluoromethyl and Pentafluorosulfanyl Indole Inhibitors of the AAA ATPase p97.Q36367307
p97/VCP promotes Cullin-RING-ubiquitin-ligase/proteasome-dependent degradation of IκBα and the preceding liberation of RelA from ubiquitinated IκBα.Q36476873
Role of the D1-D2 Linker of Human VCP/p97 in the Asymmetry and ATPase Activity of the D1-domainQ36512322
Chromatin-associated degradation is defined by UBXN-3/FAF1 to safeguard DNA replication fork progressionQ36549348
Allosteric Indole Amide Inhibitors of p97: Identification of a Novel Probe of the Ubiquitin PathwayQ36579840
Complex of Fas-associated factor 1 (FAF1) with valosin-containing protein (VCP)-Npl4-Ufd1 and polyubiquitinated proteins promotes endoplasmic reticulum-associated degradation (ERAD)Q36666150
The Ankrd13 Family of Ubiquitin-interacting Motif-bearing Proteins Regulates Valosin-containing Protein/p97 Protein-mediated Lysosomal Trafficking of Caveolin 1.Q36744845
Valosin-containing Protein (VCP)/p97 Segregase Mediates Proteolytic Processing of Cockayne Syndrome Group B (CSB) in Damaged ChromatinQ36755008
Doa1 targets ubiquitinated substrates for mitochondria-associated degradationQ36789938
Role of p97/VCP (Cdc48) in genome stabilityQ36804013
Rhomboid intramembrane protease RHBDL4 triggers ER-export and non-canonical secretion of membrane-anchored TGFαQ36970233
Rqc1 and Ltn1 Prevent C-terminal Alanine-Threonine Tail (CAT-tail)-induced Protein Aggregation by Efficient Recruitment of Cdc48 on Stalled 60S SubunitsQ37066029
Monoubiquitination of Syntaxin 5 Regulates Golgi Membrane Dynamics during the Cell CycleQ37089621
p97 Promotes a Conserved Mechanism of Helicase Unloading during DNA Cross-Link RepairQ37413678
Phosphorylation regulates VCIP135 function in Golgi membrane fusion during the cell cycle.Q37418470
Structure and interaction of ubiquitin-associated domain of human Fas-associated factor 1.Q37457799
UBE4B protein couples ubiquitination and sorting machineries to enable epidermal growth factor receptor (EGFR) degradationQ37536620
p97 Disease Mutations Modulate Nucleotide-Induced Conformation to Alter Protein-Protein InteractionsQ37577090
Ku80: product of the XRCC5 gene and its role in DNA repair and V(D)J recombinationQ28115740
Hexamerization of p97-VCP is promoted by ATP binding to the D1 domain and required for ATPase and biological activitiesQ28198216
Complete structure of p97/valosin-containing protein reveals communication between nucleotide domainsQ28204441
ATPase activity of p97-valosin-containing protein (VCP). D2 mediates the major enzyme activity, and D1 contributes to the heat-induced activityQ28215759
p47 is a cofactor for p97-mediated membrane fusionQ28243107
Altered cofactor regulation with disease-associated p97/VCP mutationsQ28258936
The role of a novel p97/valosin-containing protein-interacting motif of gp78 in endoplasmic reticulum-associated degradationQ28264480
Targeting the AAA ATPase p97 as an Approach to Treat Cancer through Disruption of Protein HomeostasisQ28269674
Discovery of a First-in-Class, Potent, Selective, and Orally Bioavailable Inhibitor of the p97 AAA ATPase (CB-5083)Q28269767
Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cellsQ28279454
Structure-activity relationship study reveals ML240 and ML241 as potent and selective inhibitors of p97 ATPaseQ28283214
Inclusion body myopathy-associated mutations in p97/VCP impair endoplasmic reticulum-associated degradationQ28284708
An NSF-like ATPase, p97, and NSF mediate cisternal regrowth from mitotic Golgi fragmentsQ28288911
The p47 co-factor regulates the ATPase activity of the membrane fusion protein, p97Q28289459
Covalent and allosteric inhibitors of the ATPase VCP/p97 induce cancer cell deathQ28295447
Conformational changes in the AAA ATPase p97-p47 adaptor complexQ28306308
Reversible inhibitor of p97, DBeQ, impairs both ubiquitin-dependent and autophagic protein clearance pathwaysQ28306744
Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47Q28511891
Dendrimer-Based Selective Proteostasis-Inhibition Strategy to Control NSCLC Growth and ProgressionQ28552714
Structural Details of Ufd1 Binding to p97 and Their Functional Implications in ER-Associated DegradationQ28554390
Analysis of nucleotide binding to P97 reveals the properties of a tandem AAA hexameric ATPaseQ28577671
Activators and target genes of Rel/NF-kappaB transcription factorsQ29547882
A multiubiquitin chain is confined to specific lysine in a targeted short-lived proteinQ29547884
AAA+ proteins: have engine, will workQ29617410
Evolutionary relationships and structural mechanisms of AAA+ proteinsQ29617454
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNAQ29617951
Rapid proteolysis of I kappa B-alpha is necessary for activation of transcription factor NF-kappa BQ29618193
Inclusion body myopathy associated with Paget disease of bone and frontotemporal dementia is caused by mutant valosin-containing proteinQ29619232
Endolysosomal sorting of ubiquitylated caveolin-1 is regulated by VCP and UBXD1 and impaired by VCP disease mutationsQ30179386
VCP/p97 cooperates with YOD1, UBXD1 and PLAA to drive clearance of ruptured lysosomes by autophagyQ30274624
Cdc48 and a ubiquitin ligase drive disassembly of the CMG helicase at the end of DNA replicationQ30663146
Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR studyQ30789737
Quantitative interaction mapping reveals an extended UBX domain in ASPL that disrupts functional p97 hexamers.Q30826494
p37 is a p97 adaptor required for Golgi and ER biogenesis in interphase and at the end of mitosisQ33265274
Withaferin A Analogs That Target the AAA+ Chaperone p97.Q33360763
FAF1 phosphorylation by AKT accumulates TGF-β type II receptor and drives breast cancer metastasis.Q33629325
Ufd2p synthesizes branched ubiquitin chains to promote the degradation of substrates modified with atypical chainsQ37637735
E4 ligase-specific ubiquitination hubs coordinate DNA double-strand-break repair and apoptosisQ37698652
Regulation of p97 in the ubiquitin-proteasome system by the UBX protein-family.Q37941379
Ubiquitination in signaling to and activation of IKK.Q37995681
Toward therapeutic targets for SCA3: Insight into the role of Machado-Joseph disease protein ataxin-3 in misfolded proteins clearanceQ38540229
Origin and Functional Evolution of the Cdc48/p97/VCP AAA+ Protein Unfolding and Remodeling MachineQ38648242
Ubiquitin- and ATP-dependent unfoldase activity of P97/VCP•NPLOC4•UFD1L is enhanced by a mutation that causes multisystem proteinopathyQ38682988
VCP/p97 Extracts Sterically Trapped Ku70/80 Rings from DNA in Double-Strand Break Repair.Q38742057
Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers.Q38841261
CRL2Lrr1 promotes unloading of the vertebrate replisome from chromatin during replication terminationQ38943169
The evolving role of ubiquitin modification in endoplasmic reticulum-associated degradationQ38979904
The p97-FAF1 protein complex reveals a common mode of p97 adaptor bindingQ39007131
The emerging complexity of ubiquitin architectureQ39052139
Role of Cdc48/p97 as a SUMO-targeted segregase curbing Rad51-Rad52 interactionQ39159347
Linear ubiquitin chains: enzymes, mechanisms and biologyQ39265294
The Interplay of Cofactor Interactions and Post-translational Modifications in the Regulation of the AAA+ ATPase p97.Q39268583
p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO.Q39275998
Enhanced ATPase activities as a primary defect of mutant valosin-containing proteins that cause inclusion body myopathy associated with Paget disease of bone and frontotemporal dementiaQ39684007
Tyrosine phosphorylation of ATPase p97 regulates its activity during ERAD.Q39950274
The deubiquitinating enzyme ataxin-3, a polyglutamine disease protein, edits Lys63 linkages in mixed linkage ubiquitin chains.Q39965496
Cytoplasmic localization of the ORF2 protein of hepatitis E virus is dependent on its ability to undergo retrotranslocation from the endoplasmic reticulumQ40182274
Fas-associated factor 1 is a negative regulator of PYRIN-containing Apaf-1-like protein 1.Q40219075
The influenza A virus matrix protein 2 undergoes retrograde transport from the endoplasmic reticulum into the cytoplasm and bypasses cytoplasmic proteasomal degradationQ40413608
Caveolin-1 is an aggresome-inducing proteinQ41789431
The role of the N-domain in the ATPase activity of the mammalian AAA ATPase p97/VCP.Q42558471
Evolutionary divergence of valosin-containing protein/cell division cycle protein 48 binding interactions among endoplasmic reticulum-associated degradation proteinsQ42610544
Excitation-induced ataxin-3 aggregation in neurons from patients with Machado-Joseph diseaseQ42818202
Mitotic phosphorylation of VCIP135 blocks p97ATPase-mediated Golgi membrane fusion.Q44689481
Definitive evidence for Ufd2-catalyzed elongation of the ubiquitin chain through Lys48 linkageQ44968325
The AAA ATPase p97/VCP interacts with its alternative co-factors, Ufd1-Npl4 and p47, through a common bipartite binding mechanismQ45061748
VAT, the thermoplasma homolog of mammalian p97/VCP, is an N domain-regulated protein unfoldaseQ46763702
The opposite role of two UBA-UBX containing proteins, p47 and SAKS1 in the degradation of a single ERAD substrate, α-TCR.Q48271302
Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assemblyQ48871478
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue17
P407language of work or nameEnglishQ1860
P921main subjectnuclear proteinQ16860021
enzymeQ8047
biomedical investigative techniqueQ66648976
P304page(s)2953-2976
P577publication date2017-08-17
P1433published inBiochemical JournalQ864221
P1476titleThe AAA+ ATPase p97, a cellular multitool
P478volume474

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