| scholarly article | Q13442814 |
| P50 | author | Lukas Käll | Q41047530 |
| Michael J MacCoss | Q87441179 | ||
| P2093 | author name string | Christopher Y Park | |
| William S Noble | |||
| Aaron A Klammer | |||
| P2860 | cites work | Statistical significance for genomewide studies | Q24681264 |
| Probability-based protein identification by searching sequence databases using mass spectrometry data | Q27860736 | ||
| An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database | Q27861106 | ||
| OLAV: towards high-throughput tandem mass spectrometry data identification | Q28202185 | ||
| Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search | Q28211385 | ||
| Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry | Q28284555 | ||
| TANDEM: matching proteins with tandem mass spectra | Q29615238 | ||
| The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools | Q33294761 | ||
| A fast coarse filtering method for peptide identification by mass spectrometry. | Q34508681 | ||
| What is a support vector machine? | Q36679246 | ||
| Effects of modified digestion schemes on the identification of proteins from complex mixtures | Q36874088 | ||
| Assigning significance to peptides identified by tandem mass spectrometry using decoy databases | Q37027478 | ||
| Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search | Q38442129 | ||
| MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. | Q38461368 | ||
| Statistical calibration of the SEQUEST XCorr function | Q41830797 | ||
| Qscore: an algorithm for evaluating SEQUEST database search results | Q44727403 | ||
| Semi-supervised learning for peptide identification from shotgun proteomics datasets. | Q45965072 | ||
| Intensity-based protein identification by machine learning from a library of tandem mass spectra. | Q45966875 | ||
| A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores | Q45967022 | ||
| InsPecT: identification of posttranslationally modified peptides from tandem mass spectra | Q46259455 | ||
| Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. | Q51910731 | ||
| Computational prediction of proteotypic peptides for quantitative proteomics. | Q51925913 | ||
| P433 | issue | 7 | |
| P304 | page(s) | 3022-3027 | |
| P577 | publication date | 2008-05-28 | |
| P1433 | published in | Journal of Proteome Research | Q3186939 |
| P1476 | title | Rapid and accurate peptide identification from tandem mass spectra | |
| P478 | volume | 7 |
| Q57438507 | A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms |
| Q34486815 | A cross-validation scheme for machine learning algorithms in shotgun proteomics |
| Q41973072 | A deeper look into Comet--implementation and features |
| Q55024021 | A graphical user interface for RAId, a knowledge integrated proteomics analysis suite with accurate statistics. |
| Q38614192 | A large scale Plasmodium vivax- Saimiri boliviensis trophozoite-schizont transition proteome. |
| Q38029605 | A review of statistical methods for protein identification using tandem mass spectrometry |
| Q34207316 | A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics |
| Q35348900 | Accurate assignment of significance to neuropeptide identifications using Monte Carlo k-permuted decoy databases |
| Q30489626 | An Open Data Format for Visualization and Analysis of Cross-Linked Mass Spectrometry Results |
| Q47680249 | Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows |
| Q34771407 | Assigning spectrum-specific P-values to protein identifications by mass spectrometry |
| Q33864743 | Automated lipid A structure assignment from hierarchical tandem mass spectrometry data |
| Q62843842 | Averaging Strategy To Reduce Variability in Target-Decoy Estimates of False Discovery Rate |
| Q38216441 | Catch me if you can: challenges and applications of cross-linking approaches |
| Q60347235 | Combining High-Resolution and Exact Calibration To Boost Statistical Power: A Well-Calibrated Score Function for High-Resolution MS2 Data |
| Q34311405 | Comet: an open-source MS/MS sequence database search tool |
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| Q34157708 | Computing exact p-values for a cross-correlation shotgun proteomics score function |
| Q36596101 | Context-sensitive markov models for peptide scoring and identification from tandem mass spectrometry |
| Q42547592 | Crux: rapid open source protein tandem mass spectrometry analysis |
| Q39099931 | Database Search Engines: Paradigms, Challenges and Solutions |
| Q40420544 | Detecting cross-linked peptides by searching against a database of cross-linked peptide pairs |
| Q41807169 | Determining the calibration of confidence estimation procedures for unique peptides in shotgun proteomics |
| Q35751671 | Direct maximization of protein identifications from tandem mass spectra |
| Q90173370 | Diverse respiratory capacity among Thermus strains from US Great Basin hot springs |
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| Q37684568 | Enhanced identification of zero-length chemical cross-links using label-free quantitation and high-resolution fragment ion spectra |
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| Q30490288 | Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification |
| Q36096980 | N-Terminal Peptide Detection with Optimized Peptide-Spectrum Matching and Streamlined Sequence Libraries. |
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| Q28660368 | Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective |
| Q41966620 | Optimized nonlinear gradients for reversed-phase liquid chromatography in shotgun proteomics |
| Q36236942 | Probing structures of large protein complexes using zero-length cross-linking |
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| Q33754694 | RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics |
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| Q42060429 | Role of Pseudomonas aeruginosa peptidoglycan-associated outer membrane proteins in vesicle formation |
| Q34218516 | Role of the tumor suppressor IQGAP2 in metabolic homeostasis: Possible link between diabetes and cancer. |
| Q28727232 | Scientific workflow management in proteomics |
| Q30581490 | Searching for a needle in a stack of needles: challenges in metaproteomics data analysis |
| Q47314427 | Sipros Ensemble Improves Database Searching and Filtering for Complex Metaproteomics |
| Q42059506 | Spectrum Identification using a Dynamic Bayesian Network Model of Tandem Mass Spectra. |
| Q51718280 | Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing. |
| Q33756082 | Speeding up tandem mass spectrometry-based database searching by longest common prefix |
| Q41830797 | Statistical calibration of the SEQUEST XCorr function |
| Q36910827 | SweetSEQer, simple de novo filtering and annotation of glycoconjugate mass spectra |
| Q33732480 | TB-IRIS: Proteomic analysis of in vitro PBMC responses to Mycobacterium tuberculosis and response modulation by dexamethasone |
| Q36095681 | Tempest: GPU-CPU computing for high-throughput database spectral matching |
| Q30889304 | The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation. |
| Q36167004 | The SEQUEST family tree |
| Q64263555 | The companion of cellulose synthase 1 confers salt tolerance through a Tau-like mechanism in plants |
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