Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format

scientific article published on 27 February 2020

Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PMIC.201900362
P932PMC publication ID7483226
P698PubMed publication ID32106352

P50authorJimmy K. EngQ63247801
P2093author name stringEric W Deutsch
P2860cites workPatternLab for proteomics: a tool for differential shotgun proteomicsQ24653597
PRIDE: a public repository of protein and peptide identifications for the proteomics communityQ25256918
A common open representation of mass spectrometry data and its application to proteomics researchQ28291914
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Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informaticsQ28646890
The HUPO proteomics standards initiative- mass spectrometry controlled vocabularyQ28703948
A guided tour of the Trans-Proteomic PipelineQ30497827
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Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.Q31031694
Comet: an open-source MS/MS sequence database search toolQ34311405
A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptidesQ35891709
Global Identification of Protein Post-translational Modifications in a Single-Pass Database SearchQ36272452
The Proteins API: accessing key integrated protein and genome informationQ36337777
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomicsQ38844572
A deeper look into Comet--implementation and featuresQ41973072
Crux: rapid open source protein tandem mass spectrometry analysisQ42547592
Rapid and accurate peptide identification from tandem mass spectraQ43147563
Unimod: Protein modifications for mass spectrometryQ47403412
PeptideShaker enables reanalysis of MS-derived proteomics data sets.Q49024658
The PSI-MOD community standard for representation of protein modification data.Q55050379
UniProt: a worldwide hub of protein knowledgeQ58611634
Proteomics Standards Initiative Extended FASTA FormatQ64109164
SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo EnginesQ88724571
The neXtProt knowledgebase in 2020: data, tools and usability improvementsQ91276990
P304page(s)e1900362
P577publication date2020-02-27
P1433published inProteomicsQ15614164
P1476titleExtending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format

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Q99546293Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Projectcites workP2860

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