Quantitative profile of five murine core proteomes using label-free functional proteomics

scientific article published on 12 June 2007

Quantitative profile of five murine core proteomes using label-free functional proteomics is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/MCP.M700037-MCP200
P698PubMed publication ID17565973

P50authorBart VanhaesebroeckQ64481959
P2093author name stringPedro R Cutillas
P2860cites workPIGOK: Linking protein identity to gene ontology and function.Q38517247
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterProQ38522863
Comparison of label-free methods for quantifying human proteins by shotgun proteomics.Q46568113
Key role of the p110delta isoform of PI3K in B-cell antigen and IL-4 receptor signaling: comparative analysis of genetic and pharmacologic interference with p110delta function in B cellsQ46716628
Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet taleQ46884609
Fmr1 knockout mouse has a distinctive strain-specific learning impairmentQ51075210
The role of factors that regulate the synthesis and secretion of very-low-density lipoprotein by hepatocytesQ51565752
Computational prediction of proteotypic peptides for quantitative proteomicsQ51925913
Initial sequencing and comparative analysis of the mouse genomeQ22122521
Cluster analysis and display of genome-wide expression patternsQ24644463
Global, in vivo, and site-specific phosphorylation dynamics in signaling networksQ27864128
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomicsQ28131742
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAsQ28131821
Energy metabolism in uncoupling protein 3 gene knockout miceQ28140746
Quantitative analysis of complex protein mixtures using isotope-coded affinity tagsQ28145324
The enzymes, regulation, and genetics of bile acid synthesisQ28204726
Essential role for the p110delta phosphoinositide 3-kinase in the allergic responseQ28288981
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profilingQ28588350
A mouse model for the learning and memory deficits associated with neurofibromatosis type IQ28590440
Critical role for the p110alpha phosphoinositide-3-OH kinase in growth and metabolic regulationQ28594707
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagentsQ29547450
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per proteinQ29617305
Evaluation of two-dimensional differential gel electrophoresis for proteomic expression analysis of a model breast cancer cell systemQ31092474
Quantification of gel-separated proteins and their phosphorylation sites by LC-MS using unlabeled internal standards: analysis of phosphoprotein dynamics in a B cell lymphoma cell lineQ31170961
Quantitation of changes in protein phosphorylation: a simple method based on stable isotope labeling and mass spectrometryQ33185788
Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MSQ33926837
A mammalian organelle map by protein correlation profilingQ33995084
Insights into insulin resistance and type 2 diabetes from knockout mouse modelsQ34011039
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteinsQ34473545
Ultrasensitive and absolute quantification of the phosphoinositide 3-kinase/Akt signal transduction pathway by mass spectrometryQ34694707
The synaptotagmins: calcium sensors for vesicular traffickingQ35943576
Hsp90 activation and cell cycle regulationQ35946757
There's more to life than neurotransmission: the regulation of exocytosis by synaptotagmin VII.Q36259864
Regulation of class IA PI3Ks: is there a role for monomeric PI3K subunits?Q36764065
PEPPeR, a platform for experimental proteomic pattern recognition.Q37113905
The structure and expression of neuron-specific enolase geneQ38490598
P433issue9
P304page(s)1560-1573
P577publication date2007-06-12
P1433published inMolecular & Cellular ProteomicsQ6895932
P1476titleQuantitative profile of five murine core proteomes using label-free functional proteomics
P478volume6

Reverse relations

cites work (P2860)
Q39640466A Self-validating Quantitative Mass Spectrometry Method for Assessing the Accuracy of High-content Phosphoproteomic Experiments
Q37324346A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome
Q43547652Analysis of Peptides in Biological Fluids by LC-MS/MS
Q36685029Analysis of the zebrafish proteome during embryonic development
Q37258096Application of label-free quantitative peptidomics for the identification of urinary biomarkers of kidney chronic allograft dysfunction
Q37817172Application of proteomic techniques to the study of urine and renal tissue
Q38660465Approaches to identify kinase dependencies in cancer signalling networks
Q37839120Biological signalling activity measurements using mass spectrometry
Q34125681Biomarker discovery in neurodegenerative diseases: a proteomic approach.
Q35239594Calpain interacts with class IA phosphoinositide 3-kinases regulating their stability and signaling activity
Q39593373Characterization of a TiO₂ enrichment method for label-free quantitative phosphoproteomics.
Q33718705Cross-species proteomics reveals specific modulation of signaling in cancer and stromal cells by phosphoinositide 3-kinase (PI3K) inhibitors
Q36162392Current challenges in software solutions for mass spectrometry-based quantitative proteomics
Q51433129Dietary phytoestrogen supplementation induces sex differences in the myocardial protein pattern of mice: a comparative proteomics study.
Q37623642Environmental stress affects the activity of metabolic and growth factor signaling networks and induces autophagy markers in MCF7 breast cancer cells
Q58730362Factors Secreted by Cancer-Associated Fibroblasts that Sustain Cancer Stem Properties in Head and Neck Squamous Carcinoma Cells as Potential Therapeutic Targets
Q37470652Fumarate is an epigenetic modifier that elicits epithelial-to-mesenchymal transition
Q64077868Host-directed kinase inhibitors act as novel therapies against intracellular Staphylococcus aureus
Q33502940IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation
Q39905351Inhibitory effect of kinetin riboside in human heptamoa, HepG2.
Q37085845Integrated transcriptomic and proteomic analysis identifies protein kinase CK2 as a key signaling node in an inflammatory cytokine network in ovarian cancer cells
Q43176423Integrating phosphoproteome and transcriptome reveals new determinants of macrophage multinucleation
Q35732961Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis
Q38695269Kinase activity ranking using phosphoproteomics data (KARP) quantifies the contribution of protein kinases to the regulation of cell viability.
Q53114408Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells.
Q30574031LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data
Q38668703Label-Free Phosphoproteomic Approach for Kinase Signaling Analysis
Q30992504Large-scale models of signal propagation in human cells derived from discovery phosphoproteomic data
Q92253682Liver Activation of Hepatocellular Nuclear Factor-4α by Small Activating RNA Rescues Dyslipidemia and Improves Metabolic Profile
Q30652771Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA).
Q29871102NCK Associated Protein 1 Modulated by miRNA-214 Determines Vascular Smooth Muscle Cell Migration, Proliferation, and Neointima Hyperplasia
Q34551892Overcoming key technological challenges in using mass spectrometry for mapping cell surfaces in tissues
Q37788627Overview of Quantitative LC-MS Techniques for Proteomics and Activitomics
Q39355884Phosphoproteomic analysis of leukemia cells under basal and drug-treated conditions identifies markers of kinase pathway activation and mechanisms of resistance.
Q33921360Phosphoproteomics Identifies Oncogenic Ras Signaling Targets and Their Involvement in Lung Adenocarcinomas
Q49979433Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells
Q34600986Protein analysis by shotgun/bottom-up proteomics
Q47804864Proteome analysis of the fathead minnow (Pimephales promelas) reproductive testes
Q35125001Proteomic identification of proteins in the human brain: Towards a more comprehensive understanding of neurodegenerative disease
Q28509745Proteomic-based detection of a protein cluster dysregulated during cardiovascular development identifies biomarkers of congenital heart defects
Q33940880Proteomics and mass spectrometry: what have we learned about the heart?
Q37817232Proteomics‐based investigations of animal models of disease
Q38024637Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
Q37389031Quantitative molecular phenotyping of gill remodeling in a cichlid fish responding to salinity stress
Q27000073Recent advances in quantitative neuroproteomics
Q92784359Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring
Q38160930Redox proteomics: from residue modifications to putative biomarker identification by gel- and LC-MS-based approaches
Q38285510Role of phosphoproteomics in the development of personalized cancer therapies
Q37364246Salinity-induced regulation of the myo-inositol biosynthesis pathway in tilapia gill epithelium
Q34454859Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy
Q37157868Synapse proteomics: current status and quantitative applications
Q37318182Targeting and imaging signature caveolar molecules in lungs
Q57956277The urinary proteome and metabonome differ from normal in adults with mitochondrial disease
Q37517985Towards functional genomics in fish using quantitative proteomics
Q26863127Using extracellular matrix proteomics to understand left ventricular remodeling
Q36110081mTOR regulates MAPKAPK2 translation to control the senescence-associated secretory phenotype

Search more.