A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis

scientific article

A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1105/TPC.114.124032
P932PMC publication ID4114940
P698PubMed publication ID24920330
P5875ResearchGate publication ID263096144

P50authorRadka SlovakQ41252950
Wolfgang BuschQ41252956
P2093author name stringTakashi Shiina
Koji Shimotani
Christian Göschl
Xiaoxue Su
P2860cites workA Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System ArchitectureQ27709611
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thalianaQ27860555
Fiji: an open-source platform for biological-image analysisQ27860912
Genome-wide insertional mutagenesis of Arabidopsis thalianaQ29617345
Light regulation of CaS, a novel phosphoprotein in the thylakoid membrane of Arabidopsis thalianaQ33323217
High-throughput quantification of root growth using a novel image-analysis tool.Q33347233
Genome-wide association study using cellular traits identifies a new regulator of root development in ArabidopsisQ33356966
A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.Q33750082
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.Q34504872
Transformation of Arabidopsis thaliana with Agrobacterium tumefaciensQ34677644
Variance component model to account for sample structure in genome-wide association studiesQ34971144
A nuclear calcium-sensing pathway is critical for gene regulation and salt stress tolerance in Arabidopsis.Q34979413
Cell identity regulators link development and stress responses in the Arabidopsis rootQ35477030
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in ArabidopsisQ35634502
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panelQ35705748
The protein expression landscape of the Arabidopsis root.Q35935676
Efficient control of population structure in model organism association mappingQ36515832
Dynamics of auxin-dependent Ca2+ and pH signaling in root growth revealed by integrating high-resolution imaging with automated computer vision-based analysisQ39263307
A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in ArabidopsisQ39608530
EZ-Rhizo: integrated software for the fast and accurate measurement of root system architectureQ40028698
A stele-enriched gene regulatory network in the Arabidopsis rootQ42652266
Salinity-induced calcium signaling and root adaptation in Arabidopsis require the calcium regulatory protein annexin1.Q43838070
GWAPP: a web application for genome-wide association mapping in Arabidopsis.Q45349415
Cell identity mediates the response of Arabidopsis roots to abiotic stress.Q46626793
Characterization of AtALMT1 expression in aluminum-inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis.Q46989224
Evidence for chloroplast control of external Ca2+-induced cytosolic Ca2+ transients and stomatal closureQ50653501
A high-resolution root spatiotemporal map reveals dominant expression patterns.Q50659214
High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and developmentQ84722506
P433issue6
P921main subjectopen-source softwareQ1130645
P304page(s)2390-2403
P577publication date2014-06-10
P1433published inThe Plant CellQ3988745
P1476titleA Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis
P478volume26

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cites work (P2860)
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