Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.

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Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1462-2920.2005.00890.X
P698PubMed publication ID16343331
P5875ResearchGate publication ID7427385

P50authorJuan Luis Ramos MartínQ21168777
José I JiménezQ56541938
Victor de LorenzoQ30513692
Eduardo DíazQ38545972
Eduardo SanteroQ38801440
Fernando RojoQ39679812
P2093author name stringAna B Hervás
Juan Nogales
Luis Yuste
Raquel Tobes
Inés Canosa
Manuel M Pérez-Pérez
P2860cites workAnatomy of a flexer-DNA complex inside a higher-order transposition intermediate.Q54588248
Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.Q54596802
MvaT proteins in Pseudomonas spp.: a novel class of H-NS-like proteinsQ57176930
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440Q22121951
Bacterial RNA polymerase subunit   and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assemblyQ27629277
Normalization of cDNA microarray dataQ28181692
Regulation of the FecI-type ECF sigma factor by transmembrane signallingQ28492427
A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosaQ28492628
The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosaQ28492868
Biofilm formation in Pseudomonas aeruginosa: fimbrial cup gene clusters are controlled by the transcriptional regulator MvaTQ28493209
The Pseudomonas aeruginosa global regulator MvaT specifically binds to the ptxS upstream region and enhances ptxS expressionQ29346813
TetR family member psrA directly binds the Pseudomonas rpoS and psrA promotersQ29346844
In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phaseQ30761453
Posttranscriptional repression of GacS/GacA-controlled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0.Q33552993
Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survivalQ33631224
Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown functionQ33758150
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymeraseQ33786712
Two extracytoplasmic function sigma subunits, sigma(E) and sigma(FecI), of Escherichia coli: promoter selectivity and intracellular levelsQ33993851
Adaptation to famine: a family of stationary-phase genes revealed by microarray analysisQ34159691
Periplasmic stress and ECF sigma factorsQ34360828
Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440.Q35048078
The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factorQ35206083
Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modesQ35277753
DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coliQ35397611
Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profilingQ35702983
Genomic and mechanistic insights into the biodegradation of organic pollutantsQ35802706
DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation.Q35892606
Promoters in the environment: transcriptional regulation in its natural contextQ36026783
Escherichia coli ribosomal RNA transcription: regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding proteinQ36027342
The Pseudomonas putida Crc global regulator controls the expression of genes from several chromosomal catabolic pathways for aromatic compoundsQ36239649
Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.Q37043488
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.Q38302084
Negative regulation by RpoS: a case of sigma factor competitionQ38332573
Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory proteinQ38364098
Catabolite repression control by crc in 2xYT medium is mediated by posttranscriptional regulation of bkdR expression in Pseudomonas putidaQ39499142
Role of the crc gene in catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway.Q39529668
Regulation of the alternative sigma factor sigma(E) during initiation, adaptation, and shutoff of the extracytoplasmic heat shock response in Escherichia coliQ39743804
Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoterQ39753872
A dedicated translation factor controls the synthesis of the global regulator Fis.Q39949442
A chaperone network controls the heat shock response in E. coliQ40408687
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulatorsQ41620651
Eubacterial sigma-factorsQ42464079
Regulation of the rpoN, ORF102 and ORF154 genes in Pseudomonas putidaQ42603544
Levels and activity of the Pseudomonas putida global regulatory protein Crc vary according to growth conditionsQ42754933
The essential HupB and HupN proteins of Pseudomonas putida provide redundant and nonspecific DNA-bending functionsQ43560009
Travels of a Pseudomonas, from Japan around the worldQ44282469
The Pseudomonas aeruginosa RpoS regulon and its relationship to quorum sensing.Q44756516
Pseudomonas putida mutants in the exbBexbDtonB gene cluster are hypersensitive to environmental and chemical stressorsQ44895228
Regulation of alpha operon gene expression in Escherichia coli. A novel form of translational coupling.Q46021048
Analysis of the rpoD gene encoding the principal sigma factor of Pseudomonas putidaQ48068144
Molecular characterization of Pseudomonas putida KT2440 rpoH gene regulationQ48368563
Interaction of the atypical prokaryotic transcription activator FlhD2C2 with early promoters of the flagellar gene hierarchyQ48558158
Global features of the Pseudomonas putida KT2440 genome sequence.Q52947508
Role of GacA, LasI, RhlI, Ppk, PsrA, Vfr and ClpXP in the regulation of the stationary-phase sigma factor rpoS/RpoS in Pseudomonas.Q53652891
Histone-like protein HU as a specific transcriptional regulator: co-factor role in repression of gal transcription by GAL repressor.Q53991761
Transcriptional pattern of Escherichia coli ihfB (himD) gene expression.Q54273124
Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01.Q54531878
P433issue1
P921main subjectPseudomonas putidaQ2738168
P304page(s)165-177
P577publication date2006-01-01
P1433published inEnvironmental MicrobiologyQ15752447
P1476titleGrowth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.
P478volume8

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cites work (P2860)
Q28756812A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
Q54378466A mutation in dnaK causes stabilization of the heat shock sigma factor σ32, accumulation of heat shock proteins and increase in toluene-resistance in Pseudomonas putida.
Q43112671A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate
Q43242623A two-component regulatory system integrates redox state and population density sensing in Pseudomonas putida
Q45987711An improved method to extract RNA from soil with efficient removal of humic acids.
Q45797913An in vitro study of Lactobacillus plantarum strains for the presence of plantaricin genes and their potential control of the table olive microbiota
Q37735901Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.
Q29346851Cohabitation of two different lexA regulons in Pseudomonas putida.
Q41962933Combination of degradation pathways for naphthalene utilization in Rhodococcus sp. strain TFB.
Q36135780Complex Interplay between FleQ, Cyclic Diguanylate and Multiple σ Factors Coordinately Regulates Flagellar Motility and Biofilm Development in Pseudomonas putida
Q33756096Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria
Q42412466Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis.
Q54503642Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida.
Q57340321Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: its role in the rhizosphere and an analysis of its target processes
Q42119810Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid
Q38209778From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced in Pseudomonas putida
Q46913643Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440.
Q41671483Functional genomics of stress response in Pseudomonas putida KT2440.
Q41874463Genomic analysis of the role of RNase R in the turnover of Pseudomonas putida mRNAs
Q38280611Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere.
Q35880814Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.
Q36012845Glutathione-Disrupted Biofilms of Clinical Pseudomonas aeruginosa Strains Exhibit an Enhanced Antibiotic Effect and a Novel Biofilm Transcriptome
Q92918056Gross transcriptomic analysis of Pseudomonas putida for diagnosing environmental shifts
Q50913088Growth of Pseudomonas putida at low temperature: global transcriptomic and proteomic analyses
Q41558018Growth phase-dependent expression profiles of three vital H-NS family proteins encoded on the chromosome of Pseudomonas putida KT2440 and on the pCAR1 plasmid
Q104064529Identification of two fnr genes and characterisation of their role in the anaerobic switch in Sphingopyxis granuli strain TFA
Q80226858Inactivation of the Pseudomonas putida cytochrome o ubiquinol oxidase leads to a significant change in the transcriptome and to increased expression of the CIO and cbb3-1 terminal oxidases
Q57340307Interspecies signalling:Pseudomonas putidaefflux pump TtgGHI is activated by indole to increase antibiotic resistance
Q40602390Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440
Q34351775Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.
Q42133180Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotoluene
Q36752483New insights on the reorganization of gene transcription in Pseudomonas putida KT2440 at elevated pressure
Q92527541Non-essentiality of canonical cell division genes in the planctomycete Planctopirus limnophila
Q35227911Oligomerization mechanisms of an H-NS family protein, Pmr, encoded on the plasmid pCAR1 provide a molecular basis for functions of H-NS family members
Q42755412Physiological responses of Pseudomonas putida to formaldehyde during detoxification.
Q33749041Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis.
Q34119223Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function
Q35535057Pseudomonas putida Fis binds to the lapF promoter in vitro and represses the expression of LapF
Q42692362Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics.
Q44533012Pseudomonas putida growing at low temperature shows increased levels of CrcZ and CrcY sRNAs, leading to reduced Crc-dependent catabolite repression
Q34460526Reconstruction of lactate utilization system in Pseudomonas putida KT2440: a novel biocatalyst for l-2-hydroxy-carboxylate production
Q54369433Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida.
Q39529493Rhizosphere selection of Pseudomonas putida KT2440 variants with increased fitness associated to changes in gene expression
Q37028271Sigma factors in Pseudomonas aeruginosa
Q42637200Simultaneous catabolite repression between glucose and toluene metabolism in Pseudomonas putida is channeled through different signaling pathways.
Q37710717Stationary phase in gram-negative bacteria.
Q27728178Structural similarities and differences in H-NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440
Q41771529Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440.
Q42946893Tetralin-induced and ThnR-regulated aldehyde dehydrogenase and beta-oxidation genes in Sphingomonas macrogolitabida strain TFA.
Q60301714The CbrB Regulon: Promoter dissection reveals novel insights into the CbrAB expression network in Pseudomonas putida
Q58031118The Crc and Hfq proteins ofPseudomonas putidacooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs
Q38343496The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes.
Q29346856The IHF regulon of exponentially growing Pseudomonas putida cells
Q51069191The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain
Q54395974The Pseudomonas putida HskA hybrid sensor kinase responds to redox signals and contributes to the adaptation of the electron transport chain composition in response to oxygen availability.
Q42021877The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solvents
Q29346839The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator.
Q42741475The functional structure of central carbon metabolism in Pseudomonas putida KT2440.
Q42363622The promoter region of lapA and its transcriptional regulation by Fis in Pseudomonas putida
Q64104125The response of Sphingopyxis granuli strain TFA to the hostile anoxic condition
Q43064098The target for the Pseudomonas putida Crc global regulator in the benzoate degradation pathway is the BenR transcriptional regulator
Q43697601The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy.
Q57340360The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid
Q43544879Transcriptional activation of the CrcZ and CrcY regulatory RNAs by the CbrB response regulator in Pseudomonas putida.
Q44100060Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene
Q38299459Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1
Q41911675Transcriptome analysis of Pseudomonas putida in response to nitrogen availability
Q90546773Two paralogous EcfG σ factors hierarchically orchestrate the activation of the General Stress Response in Sphingopyxis granuli TFA
Q46917420Two small RNAs, CrcY and CrcZ, act in concert to sequester the Crc global regulator in Pseudomonas putida, modulating catabolite repression
Q92999853Unraveling the role of the CbrA histidine kinase in the signal transduction of the CbrAB two-component system in Pseudomonas putida

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