Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.

scientific article published on 31 May 2018

Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.CHOM.2018.05.001
P932PMC publication ID6002606
P698PubMed publication ID29861170

P50authorSimon A. MallalQ91272953
Robin BombardiQ94512389
Salim Abdool KarimQ18161438
Ivelin S. GeorgievQ28379672
James E. Crowe, Jr.Q37366747
Wyatt McDonnellQ56056821
Nigel GarrettQ57459775
Cathrine ScheepersQ57460000
Ian SetliffQ57570963
Lynn MorrisQ70377150
P2093author name stringBryan E Shepherd
Charissa Mynhardt
Nagarajan Raju
Amyn A Murji
Alusha A Mamchak
Rutendo Ziki
P2860cites workIMGT/DomainGapAlign: IMGT standardized analysis of amino acid sequences of variable, constant, and groove domains (IG, TR, MH, IgSF, MhSF)Q84245398
IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysisQ24646236
Immune correlates of vaccine protection against HIV-1 acquisitionQ26778573
Antibody responses to envelope glycoproteins in HIV-1 infectionQ26991572
Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 InfectionQ27640572
Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 DonorsQ27643993
Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic AntibodyQ27644415
Co-evolution of a broadly neutralizing HIV-1 antibody and founder virusQ27644501
Developmental pathway for potent V1V2-directed HIV-neutralizing antibodiesQ27644515
Crystal Structure and Size-Dependent Neutralization Properties of HK20, a Human Monoclonal Antibody Binding to the Highly Conserved Heptad Repeat 1 of gp41Q27666159
Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 BindingQ27670829
Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep SequencingQ27671696
Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralizationQ27684578
WebLogo: A Sequence Logo GeneratorQ27860646
Mechanisms of hypergammaglobulinemia and impaired antigen-specific humoral immunity in HIV-1 infectionQ28182419
Strong cytotoxic T cell and weak neutralizing antibody responses in a subset of persons with stable nonprogressing HIV type 1 infectionQ28286243
Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangementsQ30364187
ANARCI: antigen receptor numbering and receptor classification.Q30379792
Analysis of microarray data using Z score transformationQ30787499
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing dataQ30970597
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoiresQ33807674
Convergent antibody signatures in human dengueQ34060276
IMGT®, the international ImMunoGeneTics information system® 25 years on.Q34446760
IgBLAST: an immunoglobulin variable domain sequence analysis toolQ34720205
Identification of antigen-specific B cell receptor sequences using public repertoire analysisQ34749062
Structure and immune recognition of trimeric pre-fusion HIV-1 Env.Q35142291
CATNAP: a tool to compile, analyze and tally neutralizing antibody panelsQ35810109
High levels of anti-human immunodeficiency virus type 1 (HIV-1) memory cytotoxic T-lymphocyte activity and low viral load are associated with lack of disease in HIV-1-infected long-term nonprogressorsQ35846166
VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.Q35852353
Polyfunctional HIV-Specific Antibody Responses Are Associated with Spontaneous HIV ControlQ35888710
HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogenQ35969973
Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive ImmunizationQ36081789
Mapping Polyclonal HIV-1 Antibody Responses via Next-Generation Neutralization FingerprintingQ36239578
New Member of the V1V2-Directed CAP256-VRC26 Lineage That Shows Increased Breadth and Exceptional PotencyQ36433894
Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody PrecursorsQ37551245
Insights into the trimeric HIV-1 envelope glycoprotein structureQ38323609
Restricted, canonical, stereotyped and convergent immunoglobulin responsesQ38551067
Non-neutralizing Antibodies Alter the Course of HIV-1 Infection In VivoQ38652858
Public antibodies to malaria antigens generated by two LAIR1 insertion modalitiesQ39355640
Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth.Q40449526
Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an RV144 vaccine efficacy trial vaccineeQ40626878
Upregulation of CTLA-4 by HIV-specific CD4+ T cells correlates with disease progression and defines a reversible immune dysfunctionQ44297682
CD40 ligand dysregulation in HIV infection: HIV glycoprotein 120 inhibits signaling cascades upstream of CD40 ligand transcriptionQ44757051
Non-progressing cancer patients have persistent B cell responses expressing shared antibody paratopes that target public tumor antigensQ46646453
MiXCR: software for comprehensive adaptive immunity profiling.Q48193977
Effects of sustained HIV-1 plasma viremia on HIV-1 Gag-specific CD4+ T cell maturation and function.Q51024682
Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes.Q53365554
Deciphering the human immunomeQ56479963
P433issue6
P304page(s)845-854.e6
P577publication date2018-05-31
P1433published inCell Host & MicrobeQ5058153
P1476titleMulti-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.
P478volume23

Reverse relations

cites work (P2860)
Q91812746Broadly Neutralizing Antibodies against HIV: Back to Blood
Q63246475Can We Improve Vaccine Efficacy by Targeting T and B Cell Repertoire Convergence?
Q91142849Commonality despite exceptional diversity in the baseline human antibody repertoire
Q92446647Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies
Q91782698Functional Enrichment and Analysis of Antigen-Specific Memory B Cell Antibody Repertoires in PBMCs
Q99240741Immune literacy: reading, writing and editing adaptive immunity
Q62673251Influenza Virus-Specific Human Antibody Repertoire Studies
Q64053755Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage
Q90576774Polyclonal and convergent antibody response to Ebola virus vaccine rVSV-ZEBOV
Q92049744Recent progress in the analysis of αβT cell and B cell receptor repertoires
Q89634778Restricted epitope specificity determined by variable region germline segment pairing in rodent antibody repertoires

Search more.