| scholarly article | Q13442814 |
| P356 | DOI | 10.1002/9780470882207.CH17 |
| P50 | author | Nir Ben-Tal | Q47333803 |
| P2093 | author name string | Maya Schushan | |
| P2860 | cites work | MUSCLE: a multiple sequence alignment method with reduced time and space complexity | Q21284290 |
| Progress and challenges in protein structure prediction | Q22251179 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| The Protein Data Bank | Q24515306 | ||
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| Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria | Q41880913 | ||
| Functional and structural interactions of the transmembrane domain X of NhaA, Na+/H+ antiporter of Escherichia coli, at physiological pH. | Q42611414 | ||
| Local quality assessment in homology models using statistical potentials and support vector machines | Q42958323 | ||
| Identification of correct regions in protein models using structural, alignment, and consensus information | Q43043597 | ||
| Oligomerization of NhaA, the Na+/H+ antiporter of Escherichia coli in the membrane and its functional and structural consequences. | Q43547737 | ||
| Proline residues in transmembrane alpha helices affect the folding of bacteriorhodopsin | Q43591541 | ||
| Proline-induced hinges in transmembrane helices: possible roles in ion channel gating | Q43629656 | ||
| PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane | Q43841927 | ||
| Proline-induced distortions of transmembrane helices. | Q44205414 | ||
| Properties of integral membrane protein structures: derivation of an implicit membrane potential. | Q45276526 | ||
| Atomic model of human cystic fibrosis transmembrane conductance regulator: membrane-spanning domains and coupling interfaces | Q45342979 | ||
| From membrane to molecule to the third amino acid from the left with a membrane transport protein | Q46282686 | ||
| Modeling membrane proteins based on low-resolution electron microscopy maps: a template for the TM domains of the oxalate transporter OxlT. | Q46430342 | ||
| Model structure of the Na+/H+ exchanger 1 (NHE1): functional and clinical implications | Q46915314 | ||
| STAM: simple transmembrane alignment method | Q47232217 | ||
| An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels | Q47333767 | ||
| Co-evolving residues in membrane proteins. | Q48371316 | ||
| An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. | Q48499694 | ||
| Monomers of the NhaA Na+/H+ antiporter of Escherichia coli are fully functional yet dimers are beneficial under extreme stress conditions at alkaline pH in the presence of Na+ or Li+. | Q50467116 | ||
| Proportion of membrane proteins in proteomes of 15 single-cell organisms analyzed by the SOSUI prediction system. | Q52083032 | ||
| Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. | Q52281421 | ||
| Retraction | Q56029404 | ||
| Structural Determinants of Transmembrane Helical Proteins | Q57207089 | ||
| A Cα Model for the Transmembrane α Helices of Gap Junction Intercellular Channels | Q57207119 | ||
| Comparative Protein Structure Modeling and its Applications to Drug Discovery | Q58043842 | ||
| Force Field Validation Using Protein Side Chain Prediction | Q58043851 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Amino acid substitution matrices from protein blocks | Q24563220 | ||
| High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor | Q24657484 | ||
| SWISS-MODEL: An automated protein homology-modeling server | Q24672647 | ||
| Membrane protein prediction methods | Q24683612 | ||
| Genomic analysis of membrane protein families: abundance and conserved motifs | Q24794492 | ||
| ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures | Q24812180 | ||
| Structure modeling of all identified G protein-coupled receptors in the human genome | Q25256886 | ||
| Structure of a glycerol-conducting channel and the basis for its selectivity | Q27627520 | ||
| Structure and mechanism of the lactose permease of Escherichia coli | Q27641768 | ||
| The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors | Q27642987 | ||
| X-ray structure of EmrE supports dual topology model | Q27649102 | ||
| Structure of the connexin 26 gap junction channel at 3.5 A resolution | Q27654539 | ||
| Electron-crystallographic refinement of the structure of bacteriorhodopsin | Q27732989 | ||
| SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling | Q27860614 | ||
| Comparative protein modelling by satisfaction of spatial restraints | Q27860866 | ||
| T-Coffee: A novel method for fast and accurate multiple sequence alignment | Q27860999 | ||
| Protein structure prediction and structural genomics | Q28190526 | ||
| Identification of G protein-coupled receptor genes from the human genome sequence | Q28202262 | ||
| The kamikaze approach to membrane transport | Q28210636 | ||
| Modeller: generation and refinement of homology-based protein structure models | Q28236254 | ||
| Recognition of errors in three-dimensional structures of proteins | Q28249658 | ||
| Comparative modeling for protein structure prediction | Q28299788 | ||
| Macromolecular modeling with rosetta | Q29615856 | ||
| A hierarchical approach to all-atom protein loop prediction | Q29615859 | ||
| VERIFY3D: assessment of protein models with three-dimensional profiles | Q29615886 | ||
| Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions | Q29616398 | ||
| Crystal structure of a bacterial homologue of Na+/Cl--dependent neurotransmitter transporters | Q29616590 | ||
| Structure of a bacterial multidrug ABC transporter | Q29617308 | ||
| Seven-transmembrane receptors | Q29619896 | ||
| A new method to model membrane protein structure based on silent amino acid substitutions. | Q30328399 | ||
| An approach to membrane protein structure without crystals. | Q30332082 | ||
| Can correct protein models be identified? | Q30332785 | ||
| Combining inference from evolution and geometric probability in protein structure evaluation. | Q30333209 | ||
| First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin. | Q30340985 | ||
| Modeling structurally variable regions in homologous proteins with rosetta. | Q30341350 | ||
| Hypothesis about the function of membrane-buried proline residues in transport proteins | Q35590093 | ||
| Heavier-than-air flying machines are impossible. | Q35757370 | ||
| Identification of a chloride ion binding site in Na+/Cl -dependent transporters. | Q35921659 | ||
| Toward high-resolution prediction and design of transmembrane helical protein structures | Q36023705 | ||
| Computational modeling approaches to structure-function analysis of G protein-coupled receptors | Q36256115 | ||
| Identification of amino acid residues lining the pore of a gap junction channel | Q36323688 | ||
| Solving the membrane protein folding problem | Q36327794 | ||
| Towards genome-scale structure prediction for transmembrane proteins | Q36416643 | ||
| A limited universe of membrane protein families and folds | Q36458488 | ||
| Homology modeling of G-protein-coupled receptors and implications in drug design | Q36512804 | ||
| Optimal bundling of transmembrane helices using sparse distance constraints | Q36526243 | ||
| Comparing function and structure between entire proteomes | Q36640722 | ||
| A mutation data matrix for transmembrane proteins | Q36742706 | ||
| Mechanism for alternating access in neurotransmitter transporters | Q36785076 | ||
| Structural genomics and drug discovery | Q36815339 | ||
| Membrane protein structural biology--how far can the bugs take us? | Q36915218 | ||
| Evaluation of methods for the prediction of membrane protein secondary structures | Q37411185 | ||
| Improved detection of homologous membrane proteins by inclusion of information from topology predictions. | Q38269045 | ||
| Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction | Q38270534 | ||
| Substitution rates in alpha-helical transmembrane proteins | Q38272116 | ||
| High-resolution structure of a Na+/H+ antiporter dimer obtained by pulsed electron paramagnetic resonance distance measurements | Q39939476 | ||
| Quality assessment of protein model-structures using evolutionary conservation | Q40408638 | ||
| Quasi-symmetry in the cryo-EM structure of EmrE provides the key to modeling its transmembrane domain | Q41625584 | ||
| Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives. | Q41627541 | ||
| The progress of membrane protein structure determination | Q30342003 | ||
| A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. | Q30350835 | ||
| Toward high-resolution de novo structure prediction for small proteins. | Q30351393 | ||
| Protein structure prediction: inroads to biology. | Q30352265 | ||
| Multipass membrane protein structure prediction using Rosetta | Q30352314 | ||
| The victor/FRST function for model quality estimation. | Q30352367 | ||
| Transmembrane protein structures without X-rays. | Q30352513 | ||
| Servers for protein structure prediction. | Q30353432 | ||
| A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues. | Q30353513 | ||
| Progress in structure prediction of alpha-helical membrane proteins. | Q30355348 | ||
| Scoring function accuracy for membrane protein structure prediction. | Q30360854 | ||
| Computational prediction of atomic structures of helical membrane proteins aided by EM maps. | Q30361594 | ||
| Membrane protein structure: prediction versus reality. | Q30362447 | ||
| Prediction of membrane protein structures with complex topologies using limited constraints | Q30374712 | ||
| C(alpha)-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications | Q30495061 | ||
| An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data | Q30955555 | ||
| PREDICT modeling and in-silico screening for G-protein coupled receptors. | Q31107931 | ||
| Prediction of transmembrane helix orientation in polytopic membrane proteins | Q33247631 | ||
| Latest development in drug discovery on G protein-coupled receptors | Q33262083 | ||
| Projection structure of NhaA, a secondary transporter from Escherichia coli, at 4.0 A resolution | Q33866894 | ||
| Effective use of sequence correlation and conservation in fold recognition | Q33878993 | ||
| Helix geometry in proteins | Q34049849 | ||
| Non-symmetric score matrices and the detection of homologous transmembrane proteins | Q34085064 | ||
| Helical membrane proteins: diversity of functions in the context of simple architecture | Q34282445 | ||
| Structure of the multidrug resistance efflux transporter EmrE from Escherichia coli | Q34299369 | ||
| RETRACTED: Structure of the ABC transporter MsbA in complex with ADP.vanadate and lipopolysaccharide | Q34418541 | ||
| Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH. | Q34430086 | ||
| RETRACTED: X-ray structure of the EmrE multidrug transporter in complex with a substrate | Q34479106 | ||
| Membrane-protein topology | Q34586351 | ||
| Improving the accuracy of transmembrane protein topology prediction using evolutionary information | Q34604095 | ||
| Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels | Q34624463 | ||
| On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins | Q34698551 | ||
| The lactose permease of Escherichia coli: overall structure, the sugar-binding site and the alternating access model for transport | Q35589999 | ||
| P921 | main subject | transmembrane protein | Q424204 |
| protein structure | Q735188 | ||
| P304 | page(s) | 369-401 | |
| P577 | publication date | 2010-09-07 | |
| P1476 | title | Modeling and Validation of Transmembrane Protein Structures |
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