| scholarly article | Q13442814 |
| P356 | DOI | 10.1007/978-3-7091-1416-2_2 |
| P2093 | author name string | Dong Xia | |
| Jonathan Wastling | |||
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| Plasmodium post-genomics: better the bug you know? | Q28305043 | ||
| Computational analysis and experimental validation of gene predictions in Toxoplasma gondii | Q28474195 | ||
| Paromomycin affects translation and vesicle-mediated trafficking as revealed by proteomics of paromomycin -susceptible -resistant Leishmania donovani | Q28477669 | ||
| Identification of Neospora caninum proteins regulated during the differentiation process from tachyzoite to bradyzoite stage by DIGE. | Q43159486 | ||
| Proteomics analysis and protein expression during sporozoite excystation of Cryptosporidium parvum (Coccidia, Apicomplexa). | Q43221680 | ||
| Phosphoproteome profiling of the sexually transmitted pathogen Trichomonas vaginalis | Q43948148 | ||
| Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses | Q43984448 | ||
| Malaria Plasmodium agent induces alteration in the head proteome of their Anopheles mosquito host | Q44172208 | ||
| PfHPRT: a new biomarker candidate of acute Plasmodium falciparum infection | Q44451341 | ||
| Proteome analysis of rhoptry-enriched fractions isolated from Plasmodium merozoites | Q45097646 | ||
| Targeted proteomics | Q46143284 | ||
| The Trypanosoma cruzi proteome. | Q46601686 | ||
| Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry | Q47915916 | ||
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. | Q51141864 | ||
| Systems biology. Life's complexity pyramid. | Q52029736 | ||
| High-resolution enabled TMT 8-plexing. | Q54491757 | ||
| Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae | Q57997776 | ||
| The importance of the digest: Proteolysis and absolute quantification in proteomics | Q58023415 | ||
| A Toxoplasma gondii pseudokinase inhibits host IRG resistance proteins | Q28481222 | ||
| The proteome landscape of Giardia lamblia encystation | Q28538118 | ||
| Cell cycle-dependent phosphorylation of Theileria annulata schizont surface proteins | Q28541472 | ||
| Global Gene Expression Profiling through the Complete Life Cycle of Trypanosoma vivax | Q28547186 | ||
| Making proteomics data accessible and reusable: current state of proteomics databases and repositories | Q28648439 | ||
| Proteogenomics: concepts, applications and computational strategies | Q28649850 | ||
| The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 | Q28710185 | ||
| MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification | Q29547200 | ||
| Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents | Q29547450 | ||
| Hidden Markov models in computational biology. Applications to protein modeling | Q29614397 | ||
| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis | Q29615950 | ||
| Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein | Q29617305 | ||
| PlasmoDB: a functional genomic database for malaria parasites | Q29618004 | ||
| A proteomic view of the Plasmodium falciparum life cycle | Q29618807 | ||
| Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database | Q30014825 | ||
| Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes | Q30038930 | ||
| Properties and prediction of mitochondrial transit peptides from Plasmodium falciparum | Q30041698 | ||
| Protein export marks the early phase of gametocytogenesis of the human malaria parasite Plasmodium falciparum | Q30042317 | ||
| Intramembrane proteolysis mediates shedding of a key adhesin during erythrocyte invasion by the malaria parasite | Q30043432 | ||
| PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification | Q30053602 | ||
| A protein interaction network of the malaria parasite Plasmodium falciparum | Q30080012 | ||
| Thiol-based posttranslational modifications in parasites | Q30409493 | ||
| Targeted proteomic dissection of Toxoplasma cytoskeleton sub-compartments using MORN1. | Q30534780 | ||
| Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry: proteomics of Toxoplasma gondii | Q30799271 | ||
| The SUPERFAMILY 1.75 database in 2014: a doubling of data | Q30870918 | ||
| Characterization of Cryptosporidium parvum by matrix-assisted laser desorption ionization-time of flight mass spectrometry | Q30952763 | ||
| Open source system for analyzing, validating, and storing protein identification data | Q30978337 | ||
| Proteomic analysis of cleavage events reveals a dynamic two-step mechanism for proteolysis of a key parasite adhesive complex | Q31050217 | ||
| Comparative SILAC proteomic analysis of Trypanosoma brucei bloodstream and procyclic lifecycle stages. | Q31061421 | ||
| The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction | Q31160341 | ||
| The opportunistic pathogen Toxoplasma gondii deploys a diverse legion of invasion and survival proteins | Q33218406 | ||
| Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based analysis of Giardia lamblia and Giardia muris | Q33266607 | ||
| Proteomics and glycomics analyses of N-glycosylated structures involved in Toxoplasma gondii--host cell interactions | Q33314196 | ||
| Determining the protein repertoire of Cryptosporidium parvum sporozoites | Q33321619 | ||
| Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles | Q33328691 | ||
| The phosphoproteome of bloodstream form Trypanosoma brucei, causative agent of African sleeping sickness | Q33426797 | ||
| Rhomboid-like proteins in Apicomplexa: phylogeny and nomenclature. | Q36142573 | ||
| Modulation of the host cell proteome by the intracellular apicomplexan parasite Toxoplasma gondii | Q36421596 | ||
| Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle | Q36570582 | ||
| The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation | Q36864785 | ||
| Epigenetics in Apicomplexa: control of gene expression during cell cycle progression, differentiation and antigenic variation | Q36919050 | ||
| Selected reaction monitoring for quantitative proteomics: a tutorial | Q36973024 | ||
| Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses | Q37023610 | ||
| Identification of phosphorylated proteins in erythrocytes infected by the human malaria parasite Plasmodium falciparum | Q37227728 | ||
| Proteomics in Trypanosoma cruzi--localization of novel proteins to various organelles | Q37252688 | ||
| MS-GF+ makes progress towards a universal database search tool for proteomics | Q37283260 | ||
| Differential protein expression throughout the life cycle of Trypanosoma congolense, a major parasite of cattle in Africa | Q37286649 | ||
| Proteomes and transcriptomes of the Apicomplexa--where's the message? | Q37321568 | ||
| Identification of differentially expressed proteins in sulfadiazine resistant and sensitive strains of Toxoplasma gondii using difference-gel electrophoresis (DIGE) | Q37390610 | ||
| The development and validation of an LC-MS/MS method for the determination of a new anti-malarial compound (TK900D) in human whole blood and its application to pharmacokinetic studies in mice | Q37564489 | ||
| Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle | Q37600561 | ||
| The promise of glycomics, glycan arrays and carbohydrate-based vaccines | Q37689188 | ||
| Proteomics: a pragmatic perspective | Q37771859 | ||
| Comprehensive proteomics | Q37796132 | ||
| Natural glycan microarrays | Q37802880 | ||
| The signal peptide | Q37942677 | ||
| Two-dimensional difference gel electrophoresis (DIGE) analysis of sera from visceral leishmaniasis patients | Q38310999 | ||
| A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum | Q38413459 | ||
| Quantitative proteomic analysis of Giardia duodenalis assemblage A: A baseline for host, assemblage, and isolate variation | Q38415514 | ||
| Neglected tropical diseases and omics science: proteogenomics analysis of the promastigote stage of Leishmania major parasite. | Q38475922 | ||
| Comprehensive proteomic profiling of adult Angiostrongylus costaricensis, a human parasitic nematode | Q38502252 | ||
| Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast | Q38512460 | ||
| Signal sequences | Q38624620 | ||
| Deep proteome and transcriptome mapping of a human cancer cell line | Q39446248 | ||
| Global protein stability profiling in mammalian cells | Q39920489 | ||
| Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC. | Q39924707 | ||
| Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases | Q40064488 | ||
| The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries. | Q40277100 | ||
| PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. | Q41126055 | ||
| Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. | Q41248468 | ||
| Characterization of the interaction between Toxoplasma gondii rhoptry neck protein 4 and host cellular β-tubulin. | Q41942999 | ||
| Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery | Q42027571 | ||
| Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics. | Q42036390 | ||
| Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods | Q42665323 | ||
| Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics | Q33536739 | ||
| EuPathDB: a portal to eukaryotic pathogen databases | Q33600902 | ||
| TriTrypDB: a functional genomic resource for the Trypanosomatidae | Q33601045 | ||
| De novo assembly and analysis of RNA-seq data. | Q33714197 | ||
| High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics. | Q33738172 | ||
| The minimal proteome in the reduced mitochondrion of the parasitic protist Giardia intestinalis | Q33842273 | ||
| Quantitative, high-resolution proteomics for data-driven systems biology | Q33891413 | ||
| Plasmodium falciparum proteome changes in response to doxycycline treatment | Q33934205 | ||
| Proteoform: a single term describing protein complexity | Q33964681 | ||
| The SUPERFAMILY database in 2007: families and functions | Q34000850 | ||
| Quantitative in vivo analyses reveal calcium-dependent phosphorylation sites and identifies a novel component of the Toxoplasma invasion motor complex | Q34042648 | ||
| Quantitative proteomics reveals new insights into erythrocyte invasion by Plasmodium falciparum | Q34056710 | ||
| Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis | Q34090597 | ||
| Proteomic analysis of fractionated Toxoplasma oocysts reveals clues to their environmental resistance | Q34141696 | ||
| PASSEL: the PeptideAtlas SRMexperiment library | Q34154235 | ||
| PRINTS and its automatic supplement, prePRINTS. | Q34169535 | ||
| Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS | Q34192662 | ||
| DAVID-WS: a stateful web service to facilitate gene/protein list analysis | Q34250455 | ||
| Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium. | Q34290119 | ||
| Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics | Q34292436 | ||
| Next-generation proteomics: towards an integrative view of proteome dynamics. | Q34315255 | ||
| Proteomic analysis of rhoptry organelles reveals many novel constituents for host-parasite interactions in Toxoplasma gondii | Q34432069 | ||
| Comprehensive Proteomic Analysis of Membrane Proteins in Toxoplasma gondii | Q34454866 | ||
| Gene expression. Statistics requantitates the central dogma | Q34465988 | ||
| Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. | Q34594316 | ||
| Global analysis of protein palmitoylation in African trypanosomes. | Q34739483 | ||
| An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion | Q34786925 | ||
| Discovery and verification of osteopontin and Beta-2-microglobulin as promising markers for staging human African trypanosomiasis | Q35006575 | ||
| Correlation of mRNA and protein in complex biological samples. | Q35009100 | ||
| ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. | Q35314189 | ||
| A mass spectrometric strategy for absolute quantification of Plasmodium falciparum proteins of low abundance | Q35560108 | ||
| Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens | Q35864120 | ||
| P304 | page(s) | 49-74 | |
| P577 | publication date | 2016-01-01 | |
| P1476 | title | Proteomics |
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