Statistical Methods for Identifying Differentially Expressed Genes in DNA Microarrays

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Statistical Methods for Identifying Differentially Expressed Genes in DNA Microarrays is …
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scholarly articleQ13442814

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P356DOI10.1385/1-59259-364-X:149
P698PubMed publication ID12710672

P50authorJohn D. StoreyQ55121965
Robert TibshiraniQ3938444
P921main subjectstatisticsQ12483
P304page(s)149-157
P577publication date2003-01-01
P1433published inMethods in Molecular BiologyQ15752859
P1476titleStatistical methods for identifying differentially expressed genes in DNA microarrays
P478volume224

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cites work (P2860)
Q33298689A Marfan syndrome gene expression phenotype in cultured skin fibroblasts
Q58910978A Two-Stage Penalized Logistic Regression Approach to Case-Control Genome-Wide Association Studies
Q38315505A bHLH-Type Transcription Factor, ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR/JA-ASSOCIATED MYC2-LIKE1, Acts as a Repressor to Negatively Regulate Jasmonate Signaling inArabidopsis
Q33404054A factor graph nested effects model to identify networks from genetic perturbations
Q36908985A genome-wide screen of CREB occupancy identifies the RhoA inhibitors Par6C and Rnd3 as regulators of BDNF-induced synaptogenesis.
Q33400135A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
Q38345990A strategy for the integration of QTL, gene expression, and sequence analyses
Q33629668Activity-dependent genes in mouse olfactory sensory neurons
Q33621624Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct.
Q33687232Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics
Q31089432Analysis of the Transcriptomes Downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch Signaling Pathways in Drosophila melanogaster
Q42680485Arabidopsis TNL-WRKY domain receptor RRS1 contributes to temperature-conditioned RPS4 auto-immunity
Q30315236Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity.
Q41879342Assessment of Pharmacologic Area Under the Curve When Baselines are Variable
Q33774241Bayesian Modeling of MPSS Data: Gene Expression Analysis of BovineSalmonellaInfection
Q56888657BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology
Q35477030Cell identity regulators link development and stress responses in the Arabidopsis root
Q33851618Changes in Whole Blood Gene Expression in Obese Subjects with Type 2 Diabetes Following Bariatric Surgery: a Pilot Study
Q34629565Classification of Time Series Gene Expression in Clinical Studies via Integration of Biological Network
Q42091683Comparative high-density microarray analysis of gene expression during growth of Lactobacillus helveticus in milk versus rich culture medium
Q30658984Comparative proteomics reveals deficiency of SLC9A1 (sodium/hydrogen exchanger NHE1) in β-adducin null red cells
Q92406594Comparative transcriptomics reveals the selection patterns of domesticated ramie
Q34345729Constitutive Gene Expression in Monocytes from Chronic HIV-1 Infection Overlaps with Acute Toll-Like Receptor Induced Monocyte Activation Profiles
Q36628606Correlates of relative resistance against low-dose rectal simian immunodeficiency virus challenges in peripheral blood mononuclear cells of vaccinated rhesus macaques
Q36636078Cyclophilin D extramitochondrial signaling controls cell cycle progression and chemokine-directed cell motility.
Q36193416DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Q35760603DNA copy number analysis of Grade II-III and Grade IV gliomas reveals differences in molecular ontogeny including chromothripsis associated with IDH mutation status
Q34565085DNA damage and transcriptional changes in the gills of mytilus galloprovincialis exposed to nanomolar doses of combined metal salts (Cd, Cu, Hg).
Q35184923Deregulation of sertoli and leydig cells function in patients with Klinefelter syndrome as evidenced by testis transcriptome analysis
Q47948028Detecting gene subnetworks under selection in biological pathways
Q28284961Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from Asian and Western origins
Q39220424Different patterns of Epstein-Barr virus latency in endemic Burkitt lymphoma (BL) lead to distinct variants within the BL-associated gene expression signature
Q35201092Distinct gene signatures in aortic tissue from ApoE-/- mice exposed to pathogens or Western diet.
Q33407039Diurnal variation of the human adipose transcriptome and the link to metabolic disease
Q33286766Dynamic resolution of functionally related gene sets in response to acute heat stress
Q34961287Energy balance modulates colon tumor growth: Interactive roles of insulin and estrogen
Q34087012Epigenetic silencing of a proapoptotic cell adhesion molecule, the immunoglobulin superfamily member IGSF4, by promoter CpG methylation protects Hodgkin lymphoma cells from apoptosis
Q34432770Epistasis contributes to the genetic buffering of plasma HDL cholesterol in mice
Q30444768Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays
Q35900969Erythropoietin modulation of podocalyxin and a proposed erythroblast niche
Q30544922Evaluating statistical analysis models for RNA sequencing experiments
Q36721231Expression levels of obesity-related genes are associated with weight change in kidney transplant recipients
Q33700384Expression of pattern recognition receptor genes and mortality in patients with colorectal adenocarcinoma
Q34740835Expression profile and gene age jointly shaped the genome-wide distribution of premature termination codons in a Drosophila melanogaster population
Q37569981Eye-specific gene expression following embryonic ethanol exposure in zebrafish: roles for heat shock factor 1.
Q92315688Filbertone Ameliorates Adiposity in Mice Fed a High-Fat Diet via Activation of cAMP Signaling
Q35883179Gene coexpression network topology of cardiac development, hypertrophy, and failure
Q36576374Gene expression changes in response to aging compared to heat stress, oxidative stress and ionizing radiation in Drosophila melanogaster
Q42151958Gene expression is highly correlated on the chromosome level in urinary bladder cancer.
Q33708612Genetic control of individual differences in gene-specific methylation in human brain.
Q35154932Genetic variants associated with sleep disorders
Q33550592Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes
Q35616553Genotype x adiposity interaction linkage analyses reveal a locus on chromosome 1 for lipoprotein-associated phospholipase A2, a marker of inflammation and oxidative stress
Q38462505Germination Potential of Dormant and Nondormant Arabidopsis Seeds Is Driven by Distinct Recruitment of Messenger RNAs to Polysomes.
Q33492323Global brain gene expression analysis links glutamatergic and GABAergic alterations to suicide and major depression
Q28586932Global defects in collagen secretion in a Mia3/TANGO1 knockout mouse
Q35875446Hepatic expression profiling in smolting and adult coho salmon (Onchorhynchus kisutch)
Q58765153Histone deacetylase inhibitors prevent persistent hypersensitivity in an orofacial neuropathic pain model
Q34614690Identification and Characterization of MicroRNAs Controlled by the Osteoblast-Specific Transcription Factor Osterix
Q35404430Identification of causal genes, networks, and transcriptional regulators of REM sleep and wake
Q21135503Identification of common differentially expressed genes in urinary bladder cancer
Q35653085Identification of epigenetic modifications that contribute to pathogenesis in therapy-related AML: Effective integration of genome-wide histone modification with transcriptional profiles.
Q31052266Illumina next generation sequencing data and expression microarrays data from retinoblastoma and medulloblastoma tissues
Q37622634Implication of NOTCH1 gene in susceptibility to anxiety and depression among sexual abuse victims
Q33998204Inclusion body myositis: laser microdissection reveals differential up-regulation of IFN-γ signaling cascade in attacked versus nonattacked myofibers
Q34650169Induction of olfaction and cancer-related genes in mice fed a high-fat diet as assessed through the mode-of-action by network identification analysis
Q33403078Infection and genotype remodel the entire soybean transcriptome
Q33597322Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.
Q34344292Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
Q40294338Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq
Q33804497Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis
Q98779318Investigating Cell Signaling with Gene Expression Datasets
Q36501857JAK2V617F-negative ET patients do not display constitutively active JAK/STAT signaling
Q27312723KDM5 interacts with Foxo to modulate cellular levels of oxidative stress
Q36921066Large-scale association analysis identifies new risk loci for coronary artery disease
Q28272915Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes
Q37078212Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays
Q33287884Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem
Q37379351Lhx2 Determines Odorant Receptor Expression Frequency in Mature Olfactory Sensory Neurons.
Q33594374Making informed choices about microarray data analysis
Q37277292Maternal obesity drives functional alterations in uterine NK cells.
Q30496756MetNetGE: interactive views of biological networks and ontologies
Q37351188Metabolomics uncovers dietary omega-3 fatty acid-derived metabolites implicated in anti-nociceptive responses after experimental spinal cord injury
Q42874375MiR-210 is induced by Oct-2, regulates B cells, and inhibits autoantibody production
Q40411794Microarray-based analysis of plasma cirDNA epigenetic modification profiling in xenografted mice exposed to intermittent hypoxia
Q28655621Modulation of ErbB2 blockade in ErbB2-positive cancers: the role of ErbB2 Mutations and PHLDA1
Q61798124Msx1 loss suppresses formation of the ectopic crypts developed in the Apc-deficient small intestinal epithelium
Q36667157Multiscale Distribution and Bioaccumulation Analysis of Clofazimine Reveals a Massive Immune System-Mediated Xenobiotic Sequestration Response
Q34282985Neurorestorative targets of dietary long-chain omega-3 fatty acids in neurological injury.
Q36973740Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks
Q36149231Normal early pregnancy: a transient state of epigenetic change favoring hypomethylation
Q34222535Peripheral Immune Cell Gene Expression Predicts Survival of Patients with Non-Small Cell Lung Cancer
Q37583313Peripheral venous congestion causes inflammation, neurohormonal, and endothelial cell activation
Q36593835Pharmacometabolomic mapping of early biochemical changes induced by sertraline and placebo
Q91012550Physiological and transcriptome analyses of photosynthesis and chlorophyll metabolism in variegated Citrus (Shiranuhi and Huangguogan) seedlings
Q34675402Plasticity and constraints on fatty acid composition in the phospholipids and triacylglycerols of Arabidopsis accessions grown at different temperatures
Q91779250Profiling of Differential Expression of Genes in Mice Carrying Both Mutant Presenilin 1 and Amyloid Precursor Protein Transgenes with or without Knockout of B2 Adrenergic Receptor Gene
Q36897569Profiling phospho-signaling networks in breast cancer using reverse-phase protein arrays
Q82449393Quantitative trait loci involved in regulating seed oil composition in Arabidopsis thaliana and their evolutionary implications
Q45792059RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth
Q41585708Rapid selection response for contextual fear conditioning in a cross between C57BL/6J and A/J: behavioral, QTL and gene expression analysis
Q36098855Recovery from decompensated heart failure is associated with a distinct, phase-dependent gene expression profile
Q36745834Resection of non-small cell lung cancers reverses tumor-induced gene expression changes in the peripheral immune system
Q27304709Seasonal changes in patterns of gene expression in avian song control brain regions
Q36863118Selection for increased voluntary wheel-running affects behavior and brain monoamines in mice
Q47094932Serum microRNA array analysis identifies miR-140-3p, miR-33b-3p and miR-671-3p as potential osteoarthritis biomarkers involved in metabolic processes.
Q35841330Single-nucleotide polymorphisms in DNA bypass polymerase genes and association with breast cancer and breast cancer subtypes among African Americans and Whites.
Q36335248Soluble Human Epidermal Growth Factor Receptor 2 (sHER2) as a Potential Risk Assessment, Screening, and Diagnostic Biomarker of Lung Adenocarcinoma
Q33869194Spotlight on differentially expressed genes in urinary bladder cancer.
Q37343994Stress-dependent Daxx-CHIP interaction suppresses the p53 apoptotic program
Q39674436Stromelysin-2 (MMP10) Moderates Inflammation by Controlling Macrophage Activation.
Q47394958Subchronic olanzapine exposure leads to increased expression of myelination-related genes in rat fronto-medial cortex.
Q34000784Sulforaphane- and phenethyl isothiocyanate-induced inhibition of aflatoxin B1-mediated genotoxicity in human hepatocytes: role of GSTM1 genotype and CYP3A4 gene expression
Q29617404Supervised risk predictor of breast cancer based on intrinsic subtypes
Q33369631Systems biology approach to identification of biomarkers for metastatic progression in cancer
Q37863441Systems biology of heart failure, challenges and hopes
Q38865107Testis Transcriptome Modulation in Klinefelter Patients with Hypospermatogenesis
Q52609541The constitutive differential transcriptome of a brain circuit for vocal learning
Q38494921The core mouse response to infection by neospora caninum defined by gene set enrichment analyses.
Q41910558The identification of functional motifs in temporal gene expression analysis
Q33816260The novel association of the chemokine CCL22 with abdominal aortic aneurysm
Q31140694The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.
Q33745034The regulation of miRNA-211 expression and its role in melanoma cell invasiveness
Q48304193Three Meta-Analyses Define a Set of Commonly Overexpressed Genes from Microarray Datasets on Astrocytomas
Q33361063Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males
Q35225674Toll-like receptor-3 is dispensable for the innate microRNA response to West Nile virus (WNV).
Q34597548Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis.
Q34702209Transcriptional profile analysis of RPGRORF15 frameshift mutation identifies novel genes associated with retinal degeneration
Q34699066Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle
Q38848455Transcriptome Analyses of Two Citrus Cultivars (Shiranuhi and Huangguogan) in Seedling Etiolation
Q89232706Transcriptome analysis of Porphyromonas gingivalis and Acinetobacter baumannii in polymicrobial communities
Q41911166Transcriptome changes in Mycoplasma hyopneumoniae during infection.
Q91682873Transcriptomic analysis of human IL-7 receptor alpha low and high effector memory CD8+ T cells reveals an age-associated signature linked to influenza vaccine response in older adults
Q64103221Unique Gene Expression Signatures in the Intestinal Mucosa and Organoids Derived from Germ-Free and Monoassociated Mice
Q48290626Ventral tegmental transcriptome response to intermittent nicotine treatment and withdrawal in BALB/cJ, C57BL/6ByJ, and quasi-congenic RQI mice
Q33241168Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
Q30731688ZODET: software for the identification, analysis and visualisation of outlier genes in microarray expression data
Q28573339Zinc replenishment reverses overexpression of the proinflammatory mediator S100A8 and esophageal preneoplasia in the rat
Q34592502synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival

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