PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud (scholarly article by Kristian Peters et al published 7 December 2018 in GigaScience)

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools

Q24698644

Data standards can boost metabolomics research, and if there is a will, there is a way

Q26776402

A roadmap for interpreting (13)C metabolite labeling patterns from cells

Q27003299

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports

Q27062596

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

Q27702197

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

Q27818909

Integration of magnetic resonance imaging and protein and metabolite CSF measurements to enable early diagnosis of secondary progressive multiple sclerosis

Q58796706

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Q62776588

Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform

Q88876410

On-demand virtual research environments using microservices

Q110949992

The FAIR Guiding Principles for scientific data management and stewardship

Q27942822

Toward interoperable bioscience data

Q28090939

The Ontology for Biomedical Investigations

Q28551680

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

Q28584620

Consent Codes: Upholding Standard Data Use Conditions

Q28602211

Sharing and Reuse of Sensitive Data and Samples: Supporting Researchers in Identifying Ethical and Legal Requirements

Q28608083

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Q28611417

MetaboLights: towards a new COSMOS of metabolomics data management

Q28727284

MetaboLab--advanced NMR data processing and analysis for metabolomics

Q28744568

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

Q28749402

The NIST definition of cloud computing

Q56531287

Container-based bioinformatics with Pachyderm

Q56913986

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Q56914013

Examining the Challenges of Scientific Workflows

Q56966930

Proposed minimum reporting standards for data analysis in metabolomics

Q56974474

A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human

Q57016081

Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes

Q57034124

High-throughput metabolomics by 1D NMR

Q57176244

Metabolomics across the globe

Q57783454

Metabolomics standards initiative: ontology working group work in progress

Q57803438

INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures

Q57829631

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Q57971792

Current Challenges in Plant Eco-Metabolomics.

Q55284839

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.

Q55518708

Environmental metabolomics: a critical review and future perspectives

Q56453764

Container-based bioinformatics with Pachyderm

Q56516411

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

Q44853811

The emergent role of metabolic phenotyping in dynamic patient stratification

Q45138155

Significance estimation for large scale metabolomics annotations by spectral matching

Q46082538

Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy

Q47136947

MetExplore: collaborative edition and exploration of metabolic networks.

Q52803604

From correlation to causation: analysis of metabolomics data using systems biology approaches.

Q52808586

A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics

Q38721732

The future of metabolomics in ELIXIR.

Q38882086

The ClusPro web server for protein-protein docking

Q39024817

Power Analysis and Sample Size Determination in Metabolic Phenotyping

Q39820291

IPO: a tool for automated optimization of XCMS parameters

Q39826779

Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses

Q40822020

Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application.

Q42695374

An Architecture for Genomics Analysis in a Clinical Setting Using Galaxy and Docker

Q42695763

wft4galaxy: a workflow testing tool for galaxy

Q42696086

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data

Q42697060

Global open data management in metabolomics

Q29465869

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Q30316452

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

Q30318255

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again

Q30763296

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

Q30990372

The model organism as a system: integrating 'omics' data sets

Q31032864

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data

Q31116678

XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization

Q31162551

rNMR: open source software for identifying and quantifying metabolites in NMR spectra

Q33557237

The European Genome-phenome Archive of human data consented for biomedical research.

Q33663109

In situ click chemistry generation of cyclooxygenase-2 inhibitors

Q33687262

XCMS Online: a web-based platform to process untargeted metabolomic data

Q34245491

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

Q34524689

Nmrglue: an open source Python package for the analysis of multidimensional NMR data

Q34605893

BioBlend: automating pipeline analyses within Galaxy and CloudMan

Q34695213

Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN.

Q35172789

NMRPro: an integrated web component for interactive processing and visualization of NMR spectra

Q36011168

Searching molecular structure databases with tandem mass spectra using CSI:FingerID.

Q36179301

MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes

Q36270251

A multi-institution evaluation of clinical profile anonymization

Q37112129

Metabolomics-based methods for early disease diagnostics

Q37266489

Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles

Q37440490

NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.

Q37647969

How to measure metabolic fluxes: a taxonomic guide for (13)C fluxomics

Q38296882

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

Q38393076

P275

Creative Commons Attribution 4.0 International

copyrighted

describes a project that uses

Jupyter notebook file

Q70357595

P433

issue

P407

language of work or name

English

Q1860

P921

main subject

cloud computing

metabolomics

number of pages

publication date

2018-12-07

P1433

published in

GigaScience

Q19969338

P1476

title

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

P478

volume

Reverse relations

cites work (P2860)

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P356	DOI	10.1093/GIGASCIENCE/GIY149
P932	PMC publication ID	6377398
P698	PubMed publication ID	30535405