Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H

scientific article published on 25 February 2019

Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1112363487
P356DOI10.1038/S41598-019-39641-0
P932PMC publication ID6390093
P698PubMed publication ID30804410

P50authorJun Hyuck LeeQ87677245
Hyun ParkQ91906751
Chang Woo LeeQ112312560
P2093author name stringSun-Shin Cha
Sun-Ha Park
Chang-Sook Jeong
P2860cites workThe human homolog of Escherichia coli Orn degrades small single-stranded RNA and DNA oligomersQ22254252
The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domainsQ24545753
Exoribonuclease superfamilies: structural analysis and phylogenetic distributionQ24555225
A general two-metal-ion mechanism for catalytic RNAQ24562157
MolProbity: all-atom structure validation for macromolecular crystallographyQ24649111
Degradation of RNA in bacteria: comparison of mRNA and stable RNAQ25255881
Processing of X-ray diffraction data collected in oscillation modeQ26778468
How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexesQ27681281
Structural genomics for drug design against the pathogen Coxiella burnetiiQ27700949
Coot: model-building tools for molecular graphicsQ27860505
Towards automated crystallographic structure refinement with phenix.refineQ27860678
Overview of the CCP4 suite and current developmentsQ27860782
Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation ModelingQ27860847
REFMAC5 for the refinement of macromolecular crystal structuresQ27860905
Oligoribonuclease is required for the type III secretion system and pathogenesis of Pseudomonas aeruginosa.Q51705043
The 3'-5' exonuclease site of DNA polymerase III from gram-positive bacteria: definition of a novel motif structure.Q54600155
A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerasesQ69747222
Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea iceQ73578562
Determination of the sedimentation coefficient distribution by least-squares boundary modelingQ74145637
The crystal structure of XC847 from Xanthomonas campestris: a 3'-5' oligoribonuclease of DnaQ fold family with a novel opposingly shifted helixQ79212149
Discovery, Molecular Mechanisms, and Industrial Applications of Cold-Active EnzymesQ28077585
Oligoribonuclease is a central feature of cyclic diguanylate signaling in Pseudomonas aeruginosaQ28492562
The many pathways of RNA degradationQ29615760
Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificityQ29615987
MOLREP: an Automated Program for Molecular ReplacementQ29642797
Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystalsQ29784223
Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamilyQ33731172
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analysesQ33905710
Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibilityQ34087734
mRNA decay in Escherichia coli comes of age.Q34317343
RNA processing and degradation in Bacillus subtilisQ35026024
Degradation of mRNA in Escherichia coliQ35094580
Oligoribonuclease is an essential component of the mRNA decay pathwayQ35125576
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.Q35584246
RNA components of Escherichia coli degradosome: evidence for rRNA decayQ35980889
Oligoribonuclease is the primary degradative enzyme for pGpG in Pseudomonas aeruginosa that is required for cyclic-di-GMP turnoverQ36056729
Crystal Structure and Comparative Sequence Analysis of GmhA from Colwellia psychrerythraea Strain 34H Provides Insight into Functional Similarity with DiaAQ36418847
Global analysis of Escherichia coli RNA degradosome function using DNA microarraysQ36852086
Crystal structure of UbiX, an aromatic acid decarboxylase from the psychrophilic bacterium Colwellia psychrerythraea that undergoes FMN-induced conformational changesQ38445521
Exoribonucleases and EndoribonucleasesQ38600934
Oligoribonuclease is distinct from the other known exoribonucleases of Escherichia coliQ39837618
A novel oligoribonuclease of Escherichia coli. II. Mechanism of actionQ39952663
A novel oligoribonuclease of Escherichia coli. I. Isolation and propertiesQ40343185
Crystal structure and functional characterization of an isoaspartyl dipeptidase (CpsIadA) from Colwellia psychrerythraea strain 34HQ41058893
Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cellsQ42052427
Hydrolysis of the 5'-p-nitrophenyl ester of TMP by the proofreading exonuclease (epsilon) subunit of Escherichia coli DNA polymerase III.Q43960417
Decay of ribosomal ribonucleic acid in Escherichia coli cells starved for various nutrientsQ44784655
Hydrolysis of the 5'-p-nitrophenyl ester of TMP by oligoribonucleases (ORN) from Escherichia coli, Mycobacterium smegmatis, and humanQ46893019
A conserved ancient domain joins the growing superfamily of 3'-5' exonucleasesQ47776569
Crystal structure of 5-enolpyruvylshikimate-3-phosphate synthase from a psychrophilic bacterium, Colwellia psychrerythraea 34H.Q47919898
The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.Q48034845
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectColwellia psychrerythraeaQ21255295
P304page(s)2649
P577publication date2019-02-25
P1433published inScientific ReportsQ2261792
P1476titleStructural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H
P478volume9

Reverse relations

cites work (P2860)
Q83231529A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation
Q92670408Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity
Q64949434Structural insights into nanoRNA degradation by human Rexo2.

Search more.