Differential DNA bending introduced by the Pseudomonas putida LysR‐type regulator, CatR, at the plasmid‐borne pheBA and chromosomal catBC promoters

scientific article published on 01 March 1995

Differential DNA bending introduced by the Pseudomonas putida LysR‐type regulator, CatR, at the plasmid‐borne pheBA and chromosomal catBC promoters is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1111/J.1365-2958.1995.TB02352.X
P953full work available at URLhttps://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fj.1365-2958.1995.tb02352.x
https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2958.1995.tb02352.x
P698PubMed publication ID7596284

P2093author name stringA. M. Chakrabarty
M. R. Parsek
M. Kivisaar
P2860cites workNucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600Q24684543
Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51Q28334620
Functional analysis of the Pseudomonas putida regulatory protein CatR: transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprintingQ29346838
The locus of sequence-directed and protein-induced DNA bendingQ34255559
Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradationQ34634784
Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putidaQ35966343
Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoterQ35974923
Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implicationsQ35980587
Stoichiometry of binding of CysB to the cysJIH, cysK, and cysP promoter regions of Salmonella typhimuriumQ36108463
Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putidaQ36136904
Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR familyQ36158196
Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4Q36161998
Transcriptional regulation, nucleotide sequence, and localization of the promoter of the catBC operon in Pseudomonas putidaQ36195473
Molecular cloning, characterization, and regulation of a Pseudomonas pickettii PKO1 gene encoding phenol hydroxylase and expression of the gene in Pseudomonas aeruginosa PAO1cQ36255933
Regulation of naphthalene catabolic genes of plasmid NAH7.Q36305468
Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequencesQ37596438
The A. tumefaciens transcriptional activator OccR causes a bend at a target promoter, which is partially relaxed by a plant tumor metaboliteQ38328701
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600Q39930931
Analysis of the binding site of the LysR-type transcriptional activator TcbR on the tcbR and tcbC divergent promoter sequencesQ39931152
Analysis of duplicated gene sequences associated with tfdR and tfdS in Alcaligenes eutrophus JMP134.Q39931502
Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102Q39932667
Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85.Q39938184
Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51Q39946322
Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexesQ40556347
Mutations in TrpI binding site II that differentially affect activation of the trpBA promoter of Pseudomonas aeruginosaQ41083758
Sequence of the gene (pheA) encoding phenol monooxygenase from Pseudomonas sp. EST1001: expression in Escherichia coli and Pseudomonas putidaQ48222143
Sequence of the plasmid-encoded catechol 1,2-dioxygenase-expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001.Q48236327
Regulatory circuits controlling transcription of TOL plasmid operon encoding meta-cleavage pathway for degradation of alkylbenzoates by PseudomonasQ68701026
Interactions of NodD at the nod Box: NodD binds to two distinct sites on the same face of the helix and induces a bend in the DNAQ70507928
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectpromoterQ224093
Pseudomonas putidaQ2738168
nucleic acid tertiary structureQ3823894
bacterial proteinQ64923821
P304page(s)819-828
P577publication date1995-03-01
P1433published inMolecular MicrobiologyQ6895967
P1476titleDifferential DNA bending introduced by the Pseudomonas putida LysR-type regulator, CatR, at the plasmid-borne pheBA and chromosomal catBC promoters
Differential DNA bending introduced by the Pseudomonas putida LysR‐type regulator, CatR, at the plasmid‐borne pheBA and chromosomal catBC promoters
P478volume15

Reverse relations

cites work (P2860)
Q34228474A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria
Q39803741Acquisition of a deliberately introduced phenol degradation operon, pheBA, by different indigenous Pseudomonas species
Q29346850Activation of the catBCA promoter: probing the interaction of CatR and RNA polymerase through in vitro transcription
Q33991716Characterization of mdcR, a regulatory gene of the malonate catabolic system in Klebsiella pneumoniae.
Q43805310Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors
Q39840652DNA-binding properties of the BetI repressor protein of Escherichia coli: the inducer choline stimulates BetI-DNA complex formation
Q29346920Diverse flavonoids stimulate NodD1 binding to nod gene promoters in Sinorhizobium meliloti
Q33990047Identification and functional characterization of CbaR, a MarR-like modulator of the cbaABC-encoded chlorobenzoate catabolism pathway
Q35274469Most mutant OccR proteins that are defective in positive control hold operator DNA in a locked high-angle bend
Q38291512Mutations in the occQ operator that decrease OccR-induced DNA bending do not cause constitutive promoter activity
Q39839144Operator binding of the CbbR protein, which activates the duplicate cbb CO2 assimilation operons of Alcaligenes eutrophus
Q41673115PnpM, a LysR-Type Transcriptional Regulator Activates the Hydroquinone Pathway in para-Nitrophenol Degradation in Pseudomonas sp. Strain WBC-3.
Q35599681Repression of 4-hydroxybenzoate transport and degradation by benzoate: a new layer of regulatory control in the Pseudomonas putida beta-ketoadipate pathway
Q58803586Sensor-regulator and RNAi based bifunctional dynamic control network for engineered microbial synthesis
Q34065182Synergistic transcriptional activation by one regulatory protein in response to two metabolites
Q28493013The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP
Q34634798The binding of two dimers of IciA protein to the dnaA promoter 1P element enhances the binding of RNA polymerase to the dnaA promoter 1P.
Q34166888The black cat/white cat principle of signal integration in bacterial promoters
Q77702945Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme
Q33993090Transcriptional activation of the chlorocatechol degradative genes of Ralstonia eutropha NH9.
Q42044724Transcriptional cross-regulation between Gram-negative and gram-positive bacteria, demonstrated using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum

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