The black cat/white cat principle of signal integration in bacterial promoters

scientific article

The black cat/white cat principle of signal integration in bacterial promoters is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1093/EMBOJ/20.1.1
P932PMC publication ID140184
P698PubMed publication ID11226149
P5875ResearchGate publication ID12105629

P50authorIldefonso CasesQ30513689
Victor de LorenzoQ30513692
P2860cites workGenome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APSQ22122392
Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteriaQ24634652
Vfr controls quorum sensing in Pseudomonas aeruginosaQ28493195
Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein CQ33367449
Expression systems and physiological control of promoter activity in bacteriaQ33538615
Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD.Q33889426
Characterization and role of tbuX in utilization of toluene by Ralstonia pickettii PKO1Q33889682
Evolution of a metabolic pathway for degradation of a toxic xenobiotic: the patchwork approachQ33904333
The PalkBFGHJKL promoter is under carbon catabolite repression control in Pseudomonas oleovorans but not in Escherichia coli alk+ recombinantsQ33991407
Integration host factor suppresses promiscuous activation of the sigma 54-dependent promoter Pu of Pseudomonas putidaQ34042512
Bacterial promoters triggering biodegradation of aromatic pollutantsQ34056578
Repression of phenol catabolism by organic acids in Ralstonia eutropha.Q34070545
Possible regulatory role for nonaromatic carbon sources in styrene degradation by Pseudomonas putida CA-3.Q35182988
Use of starvation promoters to limit growth and selectively enrich expression of trichloroethylene- and phenol-transforming activity in recombinant Escherichia coli [corrected]Q35185692
Catabolite repression of the toluene degradation pathway in Pseudomonas putida harboring pWW0 under various conditions of nutrient limitation in chemostat culture.Q35188793
A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding proteinQ35194414
Benzoate degradation via the ortho pathway in Alcaligenes eutrophus is perturbed by succinateQ35203026
Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT.Q35205036
Acetate utilization is inhibited by benzoate in Alcaligenes eutrophus: evidence for transcriptional control of the expression of acoE coding for acetyl coenzyme A synthetase.Q35596518
Structure and function of the Pseudomonas putida integration host factorQ35615738
A tricarboxylic acid cycle intermediate regulating transcription of a chloroaromatic biodegradative pathway: fumarate-mediated repression of the clcABD operonQ35631881
Molecular mechanisms of genetic adaptation to xenobiotic compoundsQ35655423
Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genesQ35968328
Cross talk between catabolic pathways in Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoterQ35975018
Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implicationsQ35980587
Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmidQ36106118
Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression controlQ36106809
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domainsQ36122459
Early and late responses of TOL promoters to pathway inducers: identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reportersQ36123375
The XylS-dependent Pm promoter is transcribed in vivo by RNA polymerase with sigma32 or sigma38 depending on the growth phaseQ57340438
Involvement of the FtsH (HflB) protease in the activity of sigma54 promotersQ57936199
Effector Specificity Mutants of the Transcriptional Activator NahR of Naphthalene DegradingPseudomonasDefine Protein Sites Involved in Binding of Aromatic InducersQ57936252
ATP Binding to the σ54-Dependent Activator XylRTriggers a Protein Multimerization Cycle Catalyzed by UAS DNAQ57936261
In Vitro Activities of an N-terminal Truncated Form of XylR, a σ54-dependent Transcriptional Activator of Pseudomonas putidaQ57936271
Role of sigmas in transcription from the positively controlled Pm promoter of the TOL plasmid of Pseudomonas putidaQ61919951
The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coliQ68879726
Differential DNA bending introduced by the Pseudomonas putida LysR‐type regulator, CatR, at the plasmid‐borne pheBA and chromosomal catBC promotersQ71834307
The induction and repression of benzene and catechol oxidizing capacity of Pseudomonas putida ML2 studied in perturbed chemostat cultureQ72188436
The use of elements of the E. coli Ntr-system for the design of an optimized recombinant expression system for high cell density cultivationsQ73162180
Catabolism of D-glucose by Pseudomonas putida U occurs via extracellular transformation into D-gluconic acid and induction of a specific gluconate transport systemQ73380247
Two roles for integration host factor at an enhancer-dependent nifA promoterQ73486783
A positive feedback mechanism controls expression of AlkS, the transcriptional regulator of the Pseudomonas oleovorans alkane degradation pathwayQ73486788
The alarmone (p)ppGpp mediates physiological-responsive control at the sigma 54-dependent Po promoterQ74649171
Transcriptional activation of the catechol and chlorocatechol operons: variations on a themeQ77702945
Bacteria designed for bioremediationQ77735701
Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathwayQ36184658
Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genesQ36190843
Growth phase-dependent transcription of the sigma(54)-dependent Po promoter controlling the Pseudomonas-derived (methyl)phenol dmp operon of pVI150Q36574440
Ethylbenzene degradation by Pseudomonas fluorescens strain CA-4.Q36731063
Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteriaQ37406839
Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolonQ37418572
Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulationQ38302081
Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcaligenes KF707.Q38310463
A GntR-like negative regulator of the biphenyl degradation genes of the transposon Tn4371.Q38316702
Physiological analysis of the expression of the styrene degradation gene cluster in Pseudomonas fluorescens ST.Q39485622
Role of the alternative sigma factor sigmaS in expression of the AlkS regulator of the Pseudomonas oleovorans alkane degradation pathwayQ39494646
HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1.Q39498570
Genetic evidence of distinct physiological regulation mechanisms in the sigma(54) Pu promoter of Pseudomonas putidaQ39499005
Carbon-source-dependent expression of the PalkB promoter from the Pseudomonas oleovorans alkane degradation pathway.Q39568021
In vivo and in vitro effects of (p)ppGpp on the sigma(54) promoter Pu of the TOL plasmid of Pseudomonas putida.Q39587573
Carbon catabolite repression of phenol degradation in Pseudomonas putida is mediated by the inhibition of the activator protein PhlR.Q39840873
The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)Q39843605
Heat shock regulation of sigmaS turnover: a role for DnaK and relationship between stress responses mediated by sigmaS and sigma32 in Escherichia coliQ39844060
Coactivation in vitro of the sigma54-dependent promoter Pu of the TOL plasmid of Pseudomonas putida by HU and the mammalian HMG-1 proteinQ39845418
Optical biosensor for environmental on-line monitoring of naphthalene and salicylate bioavailability with an immobilized bioluminescent catabolic reporter bacteriumQ39914793
Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activatorsQ39925462
Influence of readily metabolizable carbon on pentachlorophenol metabolism by a pentachlorophenol-degrading Flavobacterium sp.Q39926967
Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600Q39930931
Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromaticsQ39931654
Genetics of alkane oxidation by Pseudomonas oleovoransQ40397924
Designing microbial systems for gene expression in the fieldQ40535117
Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600.Q40535888
Designing microorganisms for the treatment of toxic wastesQ40572977
In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).Q40637041
Transcriptional regulation by cAMP and its receptor proteinQ40856827
Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signalsQ41055434
Signal sensing by sigma 54-dependent regulators: derepression as a control mechanismQ41130496
Cyclic AMP-independent catabolite repression in bacteriaQ41346773
Catabolite repression control in the PseudomonadsQ41401479
Origins, acquisition and dissemination of antibiotic resistance determinants.Q41504125
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulatorsQ41620651
Clues and consequences of DNA bending in transcriptionQ41620688
Improving lycopene production in Escherichia coli by engineering metabolic controlQ41734961
Degradation of pentachlorophenol by a Flavobacterium species grown in continuous culture under various nutrient limitations.Q42217474
The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmidQ42602104
Novel proteins of the phosphotransferase system encoded within the rpoN operon of Escherichia coli. Enzyme IIANtr affects growth on organic nitrogen and the conditional lethality of an erats mutantQ42690986
sigma54-dependent transcription of the Pseudomonas putida xylS operon is influenced by the IIANtr protein of the phosphotransferase system in Escherichia coliQ46340208
The rpoS gene regulates OP2, an operon for the lower pathway of xylene catabolism on the TOL plasmid, and the stress response in Pseudomonas putida mt-2.Q52531848
The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida.Q52541484
Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida.Q53922256
Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.Q54596802
P433issue1-2
P407language of work or nameEnglishQ1860
P304page(s)1-11
P577publication date2001-01-01
P1433published inThe EMBO JournalQ1278554
P1476titleThe black cat/white cat principle of signal integration in bacterial promoters
P478volume20

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cites work (P2860)
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