Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome

scientific article published on 24 June 2005

Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/NG1602
P698PubMed publication ID15976807

P50authorTomoyasu SugiyamaQ42790301
P2093author name stringEe Sin Chen
Xi Chen
Shiv I S Grewal
Hugh P Cam
Peter C FitzGerald
P2860cites workThe genome sequence of Schizosaccharomyces pombeQ21972841
Regulation of chromatin structure by site-specific histone H3 methyltransferasesQ24290115
Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatinQ24537593
RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA productionQ24557548
RNAi-mediated targeting of heterochromatin by the RITS complexQ24623437
Genetic and functional diversification of small RNA pathways in plantsQ24797901
Global expression changes resulting from loss of telomeric DNA in fission yeastQ24805476
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domainQ27860477
Asymmetry in the assembly of the RNAi enzyme complexQ27860763
RNA interference is mediated by 21- and 22-nucleotide RNAsQ27860764
The small RNA profile during Drosophila melanogaster developmentQ28201894
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAiQ28218870
Regulation of heterochromatin by histone methylation and small RNAsQ28261891
RNA silencing in plantsQ28282572
RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencingQ28287265
RNAi-mediated pathways in the nucleusQ28300961
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assemblyQ29614718
Role of transposable elements in heterochromatin and epigenetic controlQ29616253
Endogenous and silencing-associated small RNAs in plantsQ29618383
Rb targets histone H3 methylation and HP1 to promotersQ29620452
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundariesQ29622865
Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombeQ33678105
Global effects on gene expression in fission yeast by silencing and RNA interference machineries.Q33694831
The profile of repeat-associated histone lysine methylation states in the mouse epigenomeQ33868292
RNA polymerase IV directs silencing of endogenous DNA.Q33984841
Small RNAs correspond to centromere heterochromatic repeatsQ34145801
RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeastQ34168055
A protein sensor for siRNA asymmetryQ34369235
Gardening the genome: DNA methylation in Arabidopsis thalianaQ34414767
Heterochromatic deposition of centromeric histone H3-like proteinsQ34975731
An epigenetic road map for histone lysine methylationQ35120983
Small RNAs in genome rearrangement in Tetrahymena.Q35804621
A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.Q40197642
RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast.Q41864606
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locusQ43703042
Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA componentQ43890842
Establishment and maintenance of a heterochromatin domainQ44128134
Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeastQ44515864
RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteinsQ44952131
Atypical RNA polymerase subunits required for RNA-directed DNA methylationQ48136173
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formationQ48146967
spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeastQ48336594
Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.Q55039785
Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencingQ56765302
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAiQ59093938
Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeastQ73919521
Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombinationQ80987684
P433issue8
P304page(s)809-819
P577publication date2005-06-24
P1433published inNature GeneticsQ976454
P1476titleComprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome
P478volume37

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Q34125334Repression of Meiotic Genes by Antisense Transcription and by Fkh2 Transcription Factor in Schizosaccharomyces pombe
Q37454582Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
Q42363593Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization
Q36733927Rice as a model for centromere and heterochromatin research
Q34742174Role for Cohesin in the Formation of a Heterochromatic Domain at Fission Yeast Subtelomeres
Q35954431Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast
Q37961784Roles of RNAi in Chromatin Regulation and Epigenetic Inheritance
Q46698178Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.
Q50789005SNF2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance and Proper Replication
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Q36244337Schizosaccharomyces pombe Hat1 (Kat1) is associated with Mis16 and is required for telomeric silencing.
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Q34545114Selective elimination of messenger RNA prevents an incidence of untimely meiosis
Q45141810Shelterin components mediate genome reorganization in response to replication stress.
Q36534220Shugoshin forms a specialized chromatin domain at subtelomeres that regulates transcription and replication timing.
Q27327527Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe
Q37560585Silent chromatin at the middle and ends: lessons from yeasts
Q42601136Sir2 is required for Clr4 to initiate centromeric heterochromatin assembly in fission yeast.
Q37079516Small RNA-directed heterochromatin formation in the context of development: what flies might learn from fission yeast
Q38071437Small RNAs in Germline Development
Q28307317Small RNAs in transcriptional gene silencing and genome defence
Q36974244Specialization and evolution of endogenous small RNA pathways
Q38629913Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe.
Q34102684Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.
Q35780099Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.
Q37340740Subnuclear relocalization and silencing of a chromosomal region by an ectopic ribosomal DNA repeat.
Q46293830Subtelomeres constitute a safeguard for gene expression and chromosome homeostasis.
Q89610403Subtelomeric Transcription and its Regulation
Q39094256Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs
Q52327611TOR complex 2 in fission yeast is required for chromatin-mediated gene silencing and assembly of heterochromatic domains at subtelomeres.
Q35618796TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway
Q51719045Taz1-Shelterin Promotes Facultative Heterochromatin Assembly at Chromosome-Internal Sites Containing Late Replication Origins.
Q46162198Ten principles of heterochromatin formation and function.
Q42378042The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast
Q48163258The 19S proteasome regulates subtelomere silencing and facultative heterochromatin formation in fission yeast
Q34586818The Clr7 and Clr8 directionality factors and the Pcu4 cullin mediate heterochromatin formation in the fission yeast Schizosaccharomyces pombe
Q36819834The Cul4-Ddb1Cdt2 Ubiquitin Ligase Inhibits Invasion of a Boundary-Associated Antisilencing Factor into Heterochromatin
Q33855659The FUN30 chromatin remodeler, Fft3, protects centromeric and subtelomeric domains from euchromatin formation
Q34703724The JmjC domain protein Epe1 prevents unregulated assembly and disassembly of heterochromatin
Q38583047The Long Terminal Repeat Retrotransposons Tf1 and Tf2 of Schizosaccharomyces pombe
Q35827849The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast
Q30884260The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains
Q34016589The Set1/COMPASS histone H3 methyltransferase helps regulate mitosis with the CDK1 and NIMA mitotic kinases in Aspergillus nidulans
Q42112994The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference
Q36408543The contradictory definitions of heterochromatin: transcription and silencing.
Q37122968The double-stranded RNA binding domain of human Dicer functions as a nuclear localization signal
Q98178019The epigenetic regulation of centromeres and telomeres in plants and animals
Q90249962The euchromatic histone mark H3K36me3 preserves heterochromatin through sequestration of an acetyltransferase complex in fission yeast
Q64883396The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus.
Q33429021The impact of local genome sequence on defining heterochromatin domains
Q27937035The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression
Q41977257The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation
Q35786141The many faces of Dicer: the complexity of the mechanisms regulating Dicer gene expression and enzyme activities
Q35016886The potential regulation of L1 mobility by RNA interference.
Q36452595The principles of guiding by RNA: chimeric RNA-protein enzymes
Q35888810The telomeric transcriptome of Schizosaccharomyces pombe.
Q34179511Transcription and RNA interference in the formation of heterochromatin.
Q53650265Transcription and histone modifications in the recombination-free region spanning a rice centromere
Q38159962Transcription and ncRNAs: at the cent(rome)re of kinetochore assembly and maintenance
Q39846304Transcription facilitates sister chromatid cohesion on chromosomal arms
Q26863161Transcriptional regulation at the yeast nuclear envelope
Q57973165Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast
Q34793131UCSC genome browser: deep support for molecular biomedical research
Q53659537Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin
Q35748195Uncoupling of Genomic and Epigenetic Signals in the Maintenance and Inheritance of Heterochromatin Domains in Fission Yeast
Q90622274Unprogrammed epigenetic variation mediated by stochastic formation of ectopic heterochromatin
Q41495422Untimely expression of gametogenic genes in vegetative cells causes uniparental disomy.
Q90286803Vigilin protein Vgl1 is required for heterochromatin-mediated gene silencing in Schizosaccharomyces pombe
Q28585218WDHD1 modulates the post-transcriptional step of the centromeric silencing pathway
Q34338855Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts
Q36954795siRNA-mediated heterochromatin establishment requires HP1 and is associated with antisense transcription
Q82735335tRNA genes as chromatin barriers
Q39790559γH2A-Binding Protein Brc1 Affects Centromere Function in Fission Yeast

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