scholarly article | Q13442814 |
P50 | author | Christopher E. Mason | Q88306004 |
P2093 | author name string | Stacy M Horner | |
Leandro Cerchietti | |||
Samie R Jaffrey | |||
Alexa B R McIntyre | |||
Nandan S Gokhale | |||
P2860 | cites work | Model-based analysis of ChIP-Seq (MACS) | Q21183902 |
The birth of the Epitranscriptome: deciphering the function of RNA modifications | Q21184012 | ||
N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO | Q24293481 | ||
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites | Q24300072 | ||
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility | Q24304362 | ||
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq | Q24320240 | ||
N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency | Q24337939 | ||
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons | Q24598126 | ||
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays | Q24655562 | ||
m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells | Q27303707 | ||
N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection | Q27485442 | ||
Dynamics of Human and Viral RNA Methylation during Zika Virus Infection | Q27486503 | ||
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
A survey of best practices for RNA-seq data analysis | Q28071394 | ||
5' UTR m(6)A Promotes Cap-Independent Translation | Q28114851 | ||
Dynamic m(6)A mRNA methylation directs translational control of heat shock response | Q28118495 | ||
A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation | Q28267771 | ||
Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation | Q28511267 | ||
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells | Q28585513 | ||
RNA-methylation-dependent RNA processing controls the speed of the circadian clock | Q28591141 | ||
N(6)-methyladenosine of HIV-1 RNA regulates viral infection and HIV-1 Gag protein expression | Q28828855 | ||
Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package. | Q30834080 | ||
Complex heatmaps reveal patterns and correlations in multidimensional genomic data. | Q31098875 | ||
A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data | Q31108439 | ||
Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern | Q33617811 | ||
m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover. | Q33865334 | ||
Reversible methylation of m6Am in the 5' cap controls mRNA stability | Q33909841 | ||
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry | Q34354815 | ||
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA | Q34378909 | ||
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium | Q34434721 | ||
FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis | Q34448805 | ||
Near-optimal probabilistic RNA-seq quantification | Q34520743 | ||
The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells | Q34523745 | ||
Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells. | Q34538813 | ||
Settling the m6A debate: methylation of mature mRNA is not dynamic but accelerates turnover | Q34558147 | ||
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome | Q35804751 | ||
g:Profiler-a web server for functional interpretation of gene lists (2016 update) | Q35995136 | ||
mRNA N6-methyladenosine methylation of postnatal liver development in pig. | Q36299524 | ||
Musashi-2 controls cell fate, lineage bias, and TGF-β signaling in HSCs | Q37483090 | ||
RNA-seq differential expression studies: more sequence or more replication? | Q37523925 | ||
QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model | Q38599466 | ||
m6aViewer: software for the detection, analysis and visualization of N6-methyl-adenosine peaks from m6A-seq/ME-RIP sequencing data | Q38671556 | ||
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? | Q38889056 | ||
m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency | Q39038754 | ||
Dynamic RNA Modifications in Gene Expression Regulation | Q39378718 | ||
Coordination of m(6)A mRNA Methylation and Gene Transcription by ZFP217 Regulates Pluripotency and Reprogramming | Q42134417 | ||
Temporal Control of Mammalian Cortical Neurogenesis by m(6)A Methylation | Q42425840 | ||
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells. | Q45067620 | ||
Viral and cellular N(6)-methyladenosine and N(6),2'-O-dimethyladenosine epitranscriptomes in the KSHV life cycle. | Q45965685 | ||
m(6)A-LAIC-seq reveals the census and complexity of the m(6)A epitranscriptome | Q46049894 | ||
R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling. | Q47284426 | ||
pre-mRNA processing includes N6 methylation of adenosine residues that are retained in mRNA exons and the fallacy of "RNA epigenetics". | Q47340474 | ||
Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control. | Q47352505 | ||
Highly parallel direct RNA sequencing on an array of nanopores. | Q47553619 | ||
m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells. | Q47583443 | ||
Rethinking m6A Readers, Writers, and Erasers. | Q48009024 | ||
Our views of dynamic N6-methyladenosine RNA methylation | Q48150933 | ||
N6-Methyladenosine Guides mRNA Alternative Translation during Integrated Stress Response | Q50074810 | ||
Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation. | Q50422081 | ||
FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase. | Q51236778 | ||
Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal. | Q52352943 | ||
The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency. | Q52371608 | ||
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. | Q52612076 | ||
N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection. | Q54235221 | ||
RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum. | Q55034887 | ||
Ythdf2-mediated m6A mRNA clearance modulates neural development in mice. | Q55282616 | ||
A potentially abundant junctional RNA motif stabilized by mA and Mg | Q56396456 | ||
Refined RIP-seq protocol for epitranscriptome analysis with low input materials | Q58744485 | ||
RNA mA modification enzymes shape innate responses to DNA by regulating interferon β | Q59350385 | ||
-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle | Q59354605 | ||
Dynamic mA methylation facilitates mRNA triaging to stress granules | Q60017427 | ||
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads | Q62817473 | ||
m6A modification controls the innate immune response to infection by targeting type I interferons | Q67200928 | ||
The Role of mA/m-RNA Methylation in Stress Response Regulation | Q67200930 | ||
Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally | Q68692501 | ||
Single-base mapping of m6A by an antibody-independent method | Q68693705 | ||
FTO, m6 Am , and the hypothesis of reversible epitranscriptomic mRNA modifications | Q88651966 | ||
Accurate detection of m6A RNA modifications in native RNA sequences | Q90002374 | ||
The m6A Writer: Rise of a Machine for Growing Tasks | Q90582124 | ||
m6A mRNA methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer | Q91185402 | ||
Differential m6A, m6Am, and m1A Demethylation Mediated by FTO in the Cell Nucleus and Cytoplasm | Q91346488 | ||
The RNA N6-methyladenosine modification landscape of human fetal tissues | Q91624848 | ||
Altered m6A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection | Q91764990 | ||
Circadian Clock Regulation of Hepatic Lipid Metabolism by Modulation of m6A mRNA Methylation | Q93074308 | ||
Deciphering the "m6A Code" via Antibody-Independent Quantitative Profiling | Q93137733 | ||
P4510 | describes a project that uses | DESeq2 | Q113018293 |
edgeR | Q113334690 | ||
ComplexHeatmap | Q114076227 | ||
P433 | issue | 1 | |
P304 | page(s) | 6590 | |
P577 | publication date | 2020-04-20 | |
P1433 | published in | Scientific Reports | Q2261792 |
P1476 | title | Limits in the detection of m6A changes using MeRIP/m6A-seq | |
P478 | volume | 10 |
Q104566578 | An epigenetic "extreme makeover": the methylation of flaviviral RNA (and beyond) |
Q103001400 | Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing |
Q97068033 | New Twists in Detecting mRNA Modification Dynamics |
Q98771750 | Sex-Dependent RNA Editing and N6-adenosine RNA Methylation Profiling in the Gonads of a Fish, the Olive Flounder (Paralichthys olivaceus) |
Q104078550 | The cardiac methylome: A hidden layer of RNA modifications to regulate gene expression |
Q101455765 | The role of m6A modification in physiology and disease |
Search more.