Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid

scientific article published on 09 August 2019

Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1371/JOURNAL.PONE.0220934
P932PMC publication ID6688801
P698PubMed publication ID31398226

P50authorAnne-Catrin AdamQ90711544
P2093author name stringLars Martin Jakt
Paul Whatmore
Kai Kristoffer Lie
Mari Moren
Kaja Helvik Skjærven
P2860cites workEpigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signalsQ22122053
The human genome browser at UCSCQ24672361
Transposable elements: targets for early nutritional effects on epigenetic gene regulationQ24681243
DNA methylation in mammalsQ26852141
The role of endocannabinoids system in fatty liver disease and therapeutic potentialsQ27009466
Modulating epigenetic memory through vitamins and TET: implications for regenerative medicine and cancer treatment.Q50581791
Global DNA methylation was changed by a maternal high-lipid, high-energy diet during gestation and lactation in male adult mice liver.Q50595938
Is epigenetics an important link between early life events and adult disease?Q51941703
BYD Ameliorates Oxidative Stress-Induced Myocardial Apoptosis in Heart Failure Post-Acute Myocardial Infarction via the P38 MAPK-CRYAB Signaling Pathway.Q54977072
DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programmingQ58733160
Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progenyQ58803858
Metabolomic analysis revealed the role of DNA methylation in the balance of arachidonic acid metabolism and endothelial activationQ85584537
Nutritional geometry of paternal effects on embryo mortalityQ89607459
Role of methionine on epigenetic modification of DNA methylation and gene expression in animalsQ91242669
Maternal nutrition induces pervasive gene expression changes but no detectable DNA methylation differences in the liver of adult offspringQ27318473
The structural basis of protein acetylation by the p300/CBP transcriptional coactivatorQ27649849
CBP/p300 in cell growth, transformation, and developmentQ28140313
Ensembl 2016Q28603093
Functions of DNA methylation: islands, start sites, gene bodies and beyondQ29547260
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
BSMAP: whole genome bisulfite sequence MAPping programQ33487484
Transgenerational epigenetic inheritance: myths and mechanismsQ33606597
Genomics of CpG methylation in developing and developed zebrafishQ33629557
An evolutionary case for functional gene body methylation in plants and animals.Q33652670
Reprogramming the methylome: erasing memory and creating diversityQ33732536
DNA methylation of the first exon is tightly linked to transcriptional silencingQ33803762
Contribution of genetic variation to transgenerational inheritance of DNA methylationQ33813301
High dietary arachidonic acid levels induce changes in complex lipids and immune-related eicosanoids and increase levels of oxidised metabolites in zebrafish (Danio rerio).Q33827289
Dietary protein restriction during F0 pregnancy in rats induces transgenerational changes in the hepatic transcriptome in female offspringQ33959335
Spatial, temporal and interindividual epigenetic variation of functionally important DNA methylation patterns.Q33959408
HISAT: a fast spliced aligner with low memory requirementsQ34043398
Genome-wide evolutionary analysis of eukaryotic DNA methylation.Q34110385
Nutrition, epigenetics, and developmental plasticity: implications for understanding human diseaseQ34111804
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation.Q34304018
featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresQ34384848
Gene body methylation can alter gene expression and is a therapeutic target in cancer.Q34471361
Software for computing and annotating genomic rangesQ34945230
Epigenetic gene promoter methylation at birth is associated with child's later adiposityQ35046716
Arachidonic acid enhances turnover of the dermal skeleton: studies on zebrafish scalesQ35107103
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRtQ35174434
Dietary fat quality impacts genome-wide DNA methylation patterns in a cross-sectional study of Greek preadolescentsQ35477702
An integrative multi-scale analysis of the dynamic DNA methylation landscape in agingQ35563359
Early nutrition, epigenetic changes at transposons and imprinted genes, and enhanced susceptibility to adult chronic diseasesQ35617527
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancerQ35694382
Health implications of high dietary omega-6 polyunsaturated Fatty acids.Q35909254
clusterProfiler: an R package for comparing biological themes among gene clusters.Q35920061
On the presence and role of human gene-body DNA methylation.Q36050706
Nutrition and epigenetics: an interplay of dietary methyl donors, one-carbon metabolism and DNA methylationQ36119882
Dietary Intake Influences Adult Fertility and Offspring Fitness in ZebrafishQ36199646
Consequences of essential fatty acidsQ36329733
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profilesQ36378100
Dietary protein restriction of pregnant rats in the F0 generation induces altered methylation of hepatic gene promoters in the adult male offspring in the F1 and F2 generationsQ36398197
Differential DNA Methylation Analysis without a Reference GenomeQ36414982
Evolutionary aspects of diet, the omega-6/omega-3 ratio and genetic variation: nutritional implications for chronic diseasesQ36625388
The dynamic epigenome and its implications in toxicologyQ36901377
Arachidonic and oleic acid exert distinct effects on the DNA methylome.Q36956881
Comparative Epigenomic Profiling of the DNA Methylome in Mouse and Zebrafish Uncovers High Interspecies DivergenceQ37014343
Influence of metabolism on epigenetics and diseaseQ37177814
Parental vitamin deficiency affects the embryonic gene expression of immune-, lipid transport- and apolipoprotein genesQ37330263
DNA methylation in cell differentiation and reprogramming: an emerging systematic viewQ37772901
The role of developmental plasticity and epigenetics in human health.Q37855751
Nutritional influences on epigenetics and age-related diseaseQ37952442
In pursuit of design principles of regulatory sequencesQ38218965
Function and information content of DNA methylationQ38319920
DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma.Q38373823
Vitamin A and arachidonic acid altered the skeletal mineralization in Atlantic cod (Gadus morhua) larvae without any interactions on the transcriptional levelQ38411796
DNA methylation at enhancer regions: Novel avenues for epigenetic biomarker development.Q38681154
Editing DNA Methylation in the Mammalian GenomeQ38744151
Differential phosphorylation-based regulation of αB-crystallin chaperone activity for multipass transmembrane proteinsQ38745474
Dietary arachidonic acid as a risk factor for age-associated neurodegenerative diseases: Potential mechanismsQ38912689
Metabolic Inputs into the EpigenomeQ39168602
DNA methylation and the preservation of cell identityQ39398838
Quantitative comparison of genome-wide DNA methylation mapping technologies.Q39654059
Molecular mechanisms of gene silencing mediated by DNA methylationQ39674525
An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studiesQ39797837
Allele specific expression in worker reproduction genes in the bumblebee Bombus terrestrisQ40693353
Correction: Paternal B Vitamin Intake Is a Determinant of Growth, Hepatic Lipid Metabolism and Intestinal Tumor Volume in Female Apc1638N Mouse OffspringQ42849676
Dietary protein restriction of pregnant rats induces and folic acid supplementation prevents epigenetic modification of hepatic gene expression in the offspringQ46522809
Effects of dietary arachidonic acid on the reproductive physiology of female Atlantic cod (Gadus morhua L.).Q47743527
Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition.Q48057776
Genomation: a toolkit to summarize, annotate and visualize genomic intervalsQ48535467
Postnatal diet remodels hepatic DNA methylation in metabolic pathways established by a maternal high-fat diet.Q50200060
Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspringQ50321129
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesDESeq2Q113018293
P433issue8
P304page(s)e0220934
P577publication date2019-08-09
P1433published inPLOS OneQ564954
P1476titleProfiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid
P478volume14

Search more.