Recent Progress in the Analysis of Protein Deamidation Using Mass Spectrometry

scientific article published on 13 June 2020

Recent Progress in the Analysis of Protein Deamidation Using Mass Spectrometry is …
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scholarly articleQ13442814

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P356DOI10.1016/J.YMETH.2020.06.009
P698PubMed publication ID32544593

P2093author name stringHuilin Li
Yujia Ying
P2860cites workThe amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeuticsQ27860914
Insight of brain degenerative protein modifications in the pathology of neurodegeneration and dementia by proteomic profilingQ28076999
Ion activation methods for tandem mass spectrometryQ28287604
Ion Activation Methods for Peptides and ProteinsQ29391863
Parsing Disease-relevant Protein Modifications from Epiphenomena: Perspective on the Structural Basis of SOD1-Mediated ALS.Q30101060
Pepsin-Containing Membranes for Controlled Monoclonal Antibody Digestion Prior to Mass Spectrometry AnalysisQ30278544
Molecular clocksQ30327762
Lens β-crystallins: the role of deamidation and related modifications in aging and cataract.Q30360031
Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry.Q30378926
Recent advances in mass spectrometric analysis of protein deamidation.Q30383499
Independent highly sensitive characterization of asparagine deamidation and aspartic acid isomerization by sheathless CZE-ESI-MS/MS.Q30384596
Identification of Sequence Similarities among Isomerization Hotspots in Crystallin ProteinsQ30399065
Bottom up proteomics data analysis strategies to explore protein modifications and genomic variants.Q30893312
Separation of isomeric peptides using electrospray ionization/high-resolution ion mobility spectrometryQ33421447
Age-dependent deamidation of lifelong proteins in the human lensQ33522366
Glutamine deamidation: differentiation of glutamic acid and gamma-glutamic acid in peptides by electron capture dissociationQ33857391
Are ancient proteins responsible for the age-related decline in health and fitness?Q33905239
Deamidation of human proteinsQ33947742
Isoaspartate formation and neurodegeneration in Alzheimer's diseaseQ34060440
Top-down study of β2-microglobulin deamidationQ34219743
Racemization of two proteins over our lifespan: deamidation of asparagine 76 in γS crystallin is greater in cataract than in normal lenses across the age rangeQ34244542
Identification of amino acid epimerization and isomerization in crystallin proteins by tandem LC-MSQ34300357
Age-dependent deamidation of asparagine residues in proteinsQ34348827
Molecular ageing of alpha- and Beta-synucleins: protein damage and repair mechanisms.Q34695506
Radio-frequency-free cell for electron capture dissociation in tandem mass spectrometryQ34732924
Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptidesQ35015203
Integrated strong cation-exchange hybrid monolith coupled with capillary zone electrophoresis and simultaneous dynamic pH junction for large-volume proteomic analysis by mass spectrometryQ35376902
Mildly acidic conditions eliminate deamidation artifact during proteolysis: digestion with endoprotease Glu-C at pH 4.5.Q35889468
Intracerebral Injection of Metal-Binding Domain of Aβ Comprising the Isomerized Asp7 Increases the Amyloid Burden in Transgenic MiceQ35913908
Characterization of deamidation of barstar using electrospray ionization quadrupole time-of-flight mass spectrometry, which stabilizes an equilibrium unfolding intermediateQ36111510
Deamidation: Differentiation of aspartyl from isoaspartyl products in peptides by electron capture dissociationQ36476874
Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissuesQ36596625
Biochemistry of amino acid racemization and clinical application to musculoskeletal diseaseQ36626182
Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular diseaseQ36694586
Rate of Asparagine Deamidation in a Monoclonal Antibody Correlating with Hydrogen Exchange Rate at Adjacent Downstream Residues.Q47828405
A Comparison of Common Mass Spectrometry Approaches for PaleoproteomicsQ48134508
An integrated native mass spectrometry and top-down proteomics method that connects sequence to structure and function of macromolecular complexesQ48186934
Top-Down Proteomics: Ready for Prime Time?Q48262177
Characterization of Glutamine Deamidation by Long-Length Electrostatic Repulsion-Hydrophilic Interaction Chromatography-Tandem Mass Spectrometry (LERLIC-MS/MS) in Shotgun ProteomicsQ48448529
Exploring Biological and Geological Age-related Changes through Variations in Intra- and Intertooth Proteomes of Ancient DentineQ50093080
A High-Throughput Bioluminescent Assay to Monitor the Deamidation of Asparagine and Isomerization of Aspartate Residues in Therapeutic Proteins and Antibodies.Q50860057
Charge variants characterization of a monoclonal antibody by ion exchange chromatography coupled on-line to native mass spectrometry: Case study after a long-term storage at +5°C.Q50869919
Identification of multiple sources of the acidic charge variants in an IgG1 monoclonal antibody.Q50903364
Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry.Q50920962
A structural and functional study of Gln147 deamidation in αA-crystallin, a site of modification in human cataract.Q50990718
Exploiting charge differences for the analysis of challenging post-translational modifications by capillary electrophoresis-mass spectrometry.Q51145652
One-shot LC-MS/MS analysis of post-translational modifications including oxidation and deamidation of rat lens α- and β-crystallins induced by γ-irradiation.Q51531170
Quantification of in vivo site-specific Asp isomerization and Asn deamidation of mAbs in animal serum using IP-LC-MS.Q51651469
Structure of amyloid-β (20-34) with Alzheimer's-associated isomerization at Asp23 reveals a distinct protofilament interfaceQ92214816
Degenerative protein modifications in the aging vasculature and central nervous system: A problem shared is not always halvedQ92217679
Negative charge at aspartate 151 is important for human lens αA-crystallin stability and chaperone functionQ92229700
An Automated and Qualified Platform Method for Site-Specific Succinimide and Deamidation Quantitation Using Low-pH Peptide MappingQ92369542
A Cyclic Ion Mobility-Mass Spectrometry SystemQ92374949
Using bispecific antibodies in forced degradation studies to analyze the structure-function relationships of symmetrically and asymmetrically modified antibodiesQ92509360
Analysis of four therapeutic monoclonal antibodies by online capillary isoelectric focusing directly coupled to quadrupole time-of-flight mass spectrometryQ92588504
A single Asp isomer substitution in an αA-crystallin-derived peptide induces a large change in peptide propertiesQ92600219
Ionisation bias undermines the use of matrix-assisted laser desorption/ionisation for estimating peptide deamidation: Synthetic peptide studies demonstrate electrospray ionisation gives more reliable response ratiosQ92600654
A next generation setup for pre-fractionation of non-denatured proteins reveals diverse albumin proteoforms each carrying several post-translational modificationsQ92603131
Deamidation Can Compromise Antibody Colloidal Stability and Enhance Aggregation in a pH-Dependent MannerQ92648356
Characterization of IgG1 Fc Deamidation at Asparagine 325 and Its Impact on Antibody-dependent Cell-mediated Cytotoxicity and FcγRIIIa BindingQ92669076
All Ion Differential Analysis Refines the Detection of Terminal and Internal Diagnostic Fragment Ions for the Characterization of Biologics Product-Related Variants and Impurities by Middle-down Mass SpectrometryQ92678589
Engineering an anti-CD52 antibody for enhanced deamidation stabilityQ92745836
Streamlining the polishing step development process via physicochemical characterization of monoclonal antibody aggregatesQ92894153
Top-Down Characterization of Denatured Proteins and Native Protein Complexes Using Electron Capture Dissociation Implemented within a Modified Ion Mobility-Mass SpectrometerQ93057441
Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experimentsQ93089051
Spontaneous Isomerization of Long-Lived Proteins Provides a Molecular Mechanism for the Lysosomal Failure Observed in Alzheimer's DiseaseQ93089168
Protein interactome of the deamidase phosphoribosylformylglycinamidine synthetase (PFAS) by LC-MS/MSQ93108356
Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract-Associated DeamidationsQ93142025
Heterogeneity assessment of antibody-derived therapeutics at the intact and middle-up level by low-flow sheathless capillary electrophoresis-mass spectrometryQ93157652
Analysis of Glutamine Deamidation: Products, Pathways, and KineticsQ93195266
A Middle-Up Approach with Online Capillary Isoelectric Focusing/Mass Spectrometry for In-Depth Characterization of Cetuximab Charge HeterogeneityQ93207167
Does deamidation of islet amyloid polypeptide accelerate amyloid fibril formation?Q93357051
Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility?Q36876664
Comparison of originator and biosimilar therapeutic monoclonal antibodies using comprehensive two-dimensional liquid chromatography coupled with time-of-flight mass spectrometryQ37327298
Developability studies before initiation of process development: improving manufacturability of monoclonal antibodiesQ37364361
Site-specific characterization of (D)-amino acid containing peptide epimers by ion mobility spectrometryQ37724249
Differentiation of isomeric amino acid residues in proteins and peptides using mass spectrometry.Q37982946
Hydrogen deuterium mass spectrometry in drug discoveryQ38550273
Isomerization of aspartyl residues in crystallins and its influence upon cataractQ38566934
Two-dimensional capillary zone electrophoresis-mass spectrometry for the characterization of intact monoclonal antibody charge variants, including deamidation productsQ38628030
Chromatographic, Electrophoretic, and Mass Spectrometric Methods for the Analytical Characterization of Protein BiopharmaceuticalsQ38656541
Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis TestingQ38799342
Unbiased in-depth characterization of CEX fractions from a stressed monoclonal antibody by mass spectrometryQ38852892
Rapid assessment of oxidation via middle-down LCMS correlates with methionine side-chain solvent-accessible surface area for 121 clinical stage monoclonal antibodiesQ38915146
Hydrogen deuterium exchange mass spectrometry in biopharmaceutical discovery and development - A review.Q38962917
Glutamine deamidation: an indicator of antiquity, or preservational quality?Q40187189
Deamidation of Human γS-Crystallin Increases Attractive Protein Interactions: Implications for CataractQ40754367
Differences in solution dynamics between lens β-crystallin homodimers and heterodimers probed by hydrogen-deuterium exchange and deamidationQ40767353
Fast Comparative Structural Characterization of Intact Therapeutic Antibodies Using Hydrogen-Deuterium Exchange and Electron Transfer DissociationQ40994262
Quantitative proteomic study of Aspergillus Fumigatus secretome revealed deamidation of secretory enzymes.Q41337965
The Separation and Quantitation of Peptides with and without Oxidation of Methionine and Deamidation of Asparagine Using Hydrophilic Interaction Liquid Chromatography with Mass Spectrometry (HILIC-MS).Q41692568
Rapid survey of four Asp isomers in disease-related proteins by LC-MS combined with commercial enzymesQ41723378
Analysis of isoaspartic Acid by selective proteolysis with Asp-N and electron transfer dissociation mass spectrometryQ41970463
Simultaneous monitoring of oxidation, deamidation, isomerization, and glycosylation of monoclonal antibodies by liquid chromatography-mass spectrometry method with ultrafast tryptic digestionQ42081044
In-Source Decay Characterization of Isoaspartate and β-PeptidesQ42225476
Deamidation of alpha-synucleinQ42635838
Proteins and their modifications in a medieval mummyQ42676562
Enhanced separation and characterization of deamidated peptides with RP-ERLIC-based multidimensional chromatography coupled with tandem mass spectrometryQ43964541
Amide molecular clocks in drosophila proteins: potential regulators of aging and other processesQ44828835
Structure-dependent nonenzymatic deamidation of glutaminyl and asparaginyl pentapeptidesQ44893900
High Resolution CZE-MS Quantitative Characterization of Intact Biopharmaceutical Proteins: Proteoforms of Interferon-β1.Q45291742
Integrated Bottom-Up and Top-Down Liquid Chromatography-Mass Spectrometry for Characterization of Recombinant Human Growth Hormone Degradation ProductsQ45305252
Sequence and Solution Effects on the Prevalence of d-Isomers Produced by Deamidation.Q45969140
Automated Affinity Capture and On-Tip Digestion to Accurately Quantitate in Vivo Deamidation of Therapeutic Antibodies.Q46155984
Deamidation of asparagine residues: direct hydrolysis versus succinimide-mediated deamidation mechanisms.Q46157873
Method to differentiate asn deamidation that occurred prior to and during sample preparation of a monoclonal antibodyQ46203892
Fast and Effective Ion Mobility-Mass Spectrometry Separation of d-Amino-Acid-Containing PeptidesQ46293786
Capillary electrophoresis-tandem mass spectrometry as a highly selective tool for the compositional and site-specific assessment of multiple peptide-deamidation.Q46332180
Minimizing Laboratory-Induced Decay in Bone Proteomics.Q46424106
Characterization of charge variants of a monoclonal antibody using weak anion exchange chromatography at subunit levelsQ46440116
Chemical modifications of amyloid-β(1-42) have a significant impact on the repertoire of brain amyloid-β(1-42) binding proteins.Q46518156
LC-MS/MS-Based Monitoring of In Vivo Protein Biotransformation: Quantitative Determination of Trastuzumab and Its Deamidation Products in Human PlasmaQ46617526
Characterization of intact protein conjugates and biopharmaceuticals using ion-exchange chromatography with online detection by native electrospray ionization mass spectrometry and top-down tandem mass spectrometryQ46671177
Differentiation of aspartic and isoaspartic acids using electron transfer dissociationQ46843070
Paenidase, a novel D-aspartyl endopeptidase from Paenibacillus sp. B38: purification and substrate specificityQ46923280
Detecting deamidation products in proteins by electron capture dissociationQ46944243
Discriminating D-amino acid-containing peptide epimers by radical-directed dissociation mass spectrometryQ46964322
Identification of ᴅ-amino acid-containing peptides in human serumQ47106292
The Role of Electron Transfer Dissociation in Modern ProteomicsQ47111216
Top-down characterization of endogenous protein complexes with native proteomicsQ47409854
Studies on the Proteome of Human Hair - Identification of Histones and Deamidated Keratins.Q47700311
A Fluorescence-Based High-Throughput Coupled Enzymatic Assay for Quantitation of Isoaspartate in Proteins and Peptides.Q51682998
Characterization of Recombinant Monoclonal Antibody Charge Variants Using OFFGEL Fractionation, Weak Anion Exchange Chromatography, and Mass Spectrometry.Q51743053
Deamidation of N76 in human γS-crystallin promotes dimer formation.Q53363641
Ultrasensitive Characterization of Charge Heterogeneity of Therapeutic Monoclonal Antibodies Using Strong Cation Exchange Chromatography Coupled to Native Mass SpectrometryQ57033298
Monitoring of Deamidation and Lanthionine Formation in Recombinant Mugwort Allergen by Capillary Zone Electrophoresis (CZE)-UV and Transient Capillary Isotachophoresis-CZE-Electrospray Ionization-TOF-MSQ57033371
Assessment of susceptible chemical modification sites of trastuzumab and endogenous human immunoglobulins at physiological conditionsQ57146442
Comprehensive characterisation of the heterogeneity of adalimumab via charge variant analysis hyphenated on-line to native high resolution Orbitrap mass spectrometryQ57181541
Evaluation of the Effect of Trypsin Digestion Buffers on Artificial DeamidationQ57236340
Protein deamidation in biopharmaceutical manufacture: understanding, control and impactQ57449695
Amyloid-β containing isoaspartate 7 as potential biomarker and drug target in Alzheimer's diseaseQ57721654
Intact monoclonal antibodies separation and analysis by sheathless capillary electrophoresis-mass spectrometryQ57796941
Deamidation of Amino Acids on the Surface of Adeno-Associated Virus Capsids Leads to Charge Heterogeneity and Altered Vector FunctionQ57817264
Charge variant native mass spectrometry benefits mass precision and dynamic range of monoclonal antibody intact mass analysisQ58589011
Implications of Metal Binding and Asparagine Deamidation for Amyloid FormationQ58765987
The use of in-strip digestion for fast proteomic analysis on tear fluid from dry eye patientsQ58802532
Coformulation of Broadly Neutralizing Antibodies 3BNC117 and PGT121: Analytical Challenges During Preformulation Characterization and Storage Stability StudiesQ59797645
Fine Endmesolithic fish caviar meal discovered by proteomics in foodcrusts from archaeological site Friesack 4 (Brandenburg, Germany)Q60049734
The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from boneQ60540589
Structural and functional consequences of age-related isomerization in α-crystallinsQ64105433
Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized l-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations.Q64956456
Deamidation and isomerization liability analysis of 131 clinical-stage antibodies.Q64982156
Complementary middle-down and intact monoclonal antibody proteoform characterization by capillary zone electrophoresis - mass spectrometry.Q64985885
Deamidation of glutaminyl residues: dependence on pH, temperature, and ionic strengthQ68776856
Quantitating the relative abundance of isoaspartyl residues in deamidated proteins by electron capture dissociationQ80334852
Novel application of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) in shotgun proteomics: comprehensive profiling of rat kidney proteomeQ84181530
Deamidation in ricin studied by capillary zone electrophoresis- and liquid chromatography-mass spectrometryQ86157209
Identification of Isomeric Aspartate residues in βB2-crystallin from Aged Human LensQ88358426
High throughput detection of deamidation using S-(5'-adenosyl)-l-homocysteine hydrolase and a fluorogenic reagentQ88629375
Use of In Vitro Systems To Model In Vivo Degradation of Therapeutic Monoclonal AntibodiesQ88962712
Online Removal of Sodium Dodecyl Sulfate via Weak Cation Exchange in Liquid Chromatography-Mass Spectrometry Based ProteomicsQ89059232
Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation CascadeQ89100912
Combination of intact, middle-up and bottom-up levels to characterize 7 therapeutic monoclonal antibodies by capillary electrophoresis - Mass spectrometryQ89469043
Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometryQ89475588
Application of CE-MS for the analysis of histones and histone modificationsQ89515859
TUTORIAL: ION ACTIVATION IN TANDEM MASS SPECTROMETRY USING ULTRA-HIGH RESOLUTION INSTRUMENTATIONQ89645959
Characterization and quantification of succinimide using peptide mapping under low-pH conditions and hydrophobic interaction chromatographyQ90024811
Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten PeptidesQ90227760
Effect of Aluminum Adjuvant and Preservatives on Structural Integrity and Physicochemical Stability Profiles of Three Recombinant Subunit Rotavirus Vaccine AntigensQ90564961
Multi-Attribute Method for Quality Control of Therapeutic ProteinsQ90743535
Streamlined Characterization of an Antibody-Drug Conjugate by Two-Dimensional and Four-Dimensional Liquid Chromatography/Mass SpectrometryQ90764550
Ion Activation Methods for Peptides and ProteinsQ91008688
Unique Impacts of Methionine Oxidation, Tryptophan Oxidation, and Asparagine Deamidation on Antibody Stability and AggregationQ91069919
Molecular basis for chirality-regulated Aβ self-assembly and receptor recognition revealed by ion mobility-mass spectrometryQ91151379
A systematic approach for analysis and characterization of mispairing in bispecific antibodies with asymmetric architectureQ91177710
Rapid Prediction of Deamidation Rates of Proteins to Assess Their Long-Term Stability Using Hydrogen Exchange-Mass SpectrometryQ91233305
Improved Electrophoretic Separation to Assist the Monitoring of Bcl-xL Post-Translational ModificationsQ91251767
Proteomic and Unbiased Post-Translational Modification Profiling of Amyloid Plaques and Surrounding Tissue in a Transgenic Mouse Model of Alzheimer's DiseaseQ91467860
Multiplexed Middle-Down Mass Spectrometry as a Method for Revealing Light and Heavy Chain Connectivity in a Monoclonal AntibodyQ91721835
Top-down Mass Spectrometry of Sarcomeric Protein Post-translational Modifications from Non-human Primate Skeletal MuscleQ92133168
Isomerization of Asp7 in Beta-Amyloid Enhances Inhibition of the α7 Nicotinic Receptor and Promotes NeurotoxicityQ92210130
P4510describes a project that usesmass spectrometryQ180809
P577publication date2020-06-13
P1433published inMethodsQ6823859
P1476titleRecent Progress in the Analysis of Protein Deamidation Using Mass Spectrometry