Molecular clocks

scientific article published on January 2001

Molecular clocks is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2001PNAS...98..944R
P356DOI10.1073/PNAS.98.3.944
P932PMC publication ID14689
P698PubMed publication ID11158575
P5875ResearchGate publication ID12170311

P2093author name stringRobinson NE
Robinson AB
P2860cites workPropensity for spontaneous succinimide formation from aspartyl and asparaginyl residues in cellular proteinsQ28618536
Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradationQ30406473
Controlled deamidation of peptides and proteins: an experimental hazard and a possible biological timerQ33699193
Deamidation In Vivo of an Asparagine Residue of Rabbit Muscle AldolaseQ34714805
Evolution and the Distribution of Glutaminyl and Asparaginyl Residues in ProteinsQ37435122
Distribution of glutamine and asparagine residues and their near neighbors in peptides and proteinsQ37603553
Molecular clocks, molecular profiles, and optimum diets: Three approaches to the problem of agingQ39794179
Deamidation of glutaminyl and asparaginyl residues in peptides and proteins.Q39902554
Specific glutamine and asparagine residues of gamma-S crystallin are resistant to in vivo deamidationQ40874506
Primary sequence dependence of the deamidation of rabbit muscle aldolaseQ41516914
Sequence dependent deamidation rates for model peptides of hen egg-white lysozyme.Q43833644
The microheterogeneity of the mammalian H1(0) histone. Evidence for an age-dependent deamidationQ48462956
Terminal marking of triosephosphate isomerase: consequences of deamidation.Q50757994
Effect of the three-dimensional structure on the deamidation reaction of ribonuclease AQ57959178
Sequence dependent deamidation rates for model peptides of cytochrome CQ68695853
Deamidation of glutaminyl residues: dependence on pH, temperature, and ionic strengthQ68776856
Sequence dependent deamidation rates for model peptides of histone IVQ68830073
Rates of nonenzymic deamidation of glutaminyl and asparaginyl residues in pentapeptidesQ69625395
Multiple forms of cytochrome c in the rat. Precursor-product relationship between the main component Cy I and the minor components Cy II and Cy 3 in vivoQ72039738
Microheterogeneity of recombinant human phenylalanine hydroxylase as a result of nonenzymatic deamidations of labile amide containing amino acids. Effects on catalytic and stability propertiesQ73023867
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)944-949
P577publication date2001-01-01
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleMolecular clocks
P478volume98

Reverse relations

cites work (P2860)
Q46575307A Computational Study of the Mechanism of Succinimide Formation in the Asn-His Sequence: Intramolecular Catalysis by the His Side Chain.
Q40443534A Viral Deamidase Targets the Helicase Domain of RIG-I to Block RNA-Induced Activation
Q36675136A high-throughput peptidomic strategy to decipher the molecular diversity of cyclic cysteine-rich peptides
Q64066982A post-translational modification of human Norovirus capsid protein attenuates glycan binding
Q30317896A quantitative analysis of spontaneous isoaspartate formation from N-terminal asparaginyl and aspartyl residues
Q54798246A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective
Q37685871Accurate identification of deamidated peptides in global proteomics using a quadrupole orbitrap mass spectrometer
Q34049032Age estimation of museum wool textiles from Ovis aries using deamidation rates utilizing matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Q35119508Aging as war between chemical and biochemical processes: Protein methylation and the recognition of age-damaged proteins for repair
Q36984283An 18O-labeling assisted LC/MS method for assignment of aspartyl/isoaspartyl products from Asn deamidation and Asp isomerization in proteins
Q44746331An oncogenic tyrosine kinase inhibits DNA repair and DNA-damage-induced Bcl-xL deamidation in T cell transformation
Q44239836Analysis of isoaspartate in a recombinant monoclonal antibody and its charge isoforms
Q41970463Analysis of isoaspartic Acid by selective proteolysis with Asp-N and electron transfer dissociation mass spectrometry
Q44367201Analysis of the subunit composition of complex I from bovine heart mitochondria
Q36358797Asparagine deamidation reduces DNA-binding affinity of the Drosophila melanogaster Scr homeodomain
Q44665427Aspartic acid racemization: evidence for marked longevity of elastin in human skin.
Q39252529Assessing analytical methods to monitor isoAsp formation in monoclonal antibodies
Q38717942Assessment of chemical modifications of sites in the CDRs of recombinant antibodies: Susceptibility vs. functionality of critical quality attributes
Q30331771Atomic resolution structure of a succinimide intermediate in E.coli CheY.
Q44173674Bcl-xL deamidation is a critical switch in the regulation of the response to DNA damage
Q48388591Biochemical characterization of vitreous and cardiac amyloid in Ile84Ser transthyretin amyloidosis
Q46756200Both chloroplastic and cytosolic phosphofructoaldolase isozymes are present in the pea leaf nucleus
Q54219436CNF1-like deamidase domains: common Lego bricks among cancer-promoting immunomodulatory bacterial virulence factors.
Q36111510Characterization of deamidation of barstar using electrospray ionization quadrupole time-of-flight mass spectrometry, which stabilizes an equilibrium unfolding intermediate
Q43764396Characterization of therapeutic monoclonal antibodies reveals differences between in vitro and in vivo time-course studies
Q42153052Chemical and functional aspects of posttranslational modification of proteins
Q53622461Co-occurrence of both L-asparaginase subtypes in Arabidopsis: At3g16150 encodes a K+-dependent L-asparaginase.
Q37080677Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome
Q41913558Comparison of the in vitro and in vivo stability of a succinimide intermediate observed on a therapeutic IgG1 molecule
Q92942477Computational Studies on the Nonenzymatic Deamidation Mechanisms of Glutamine Residues
Q36131709Deamidation Reactions of Asparagine- and Glutamine-Containing Dipeptides Investigated by Ion Spectroscopy.
Q48152649Deamidation Slows Curli Amyloid-Protein Aggregation.
Q41814945Deamidation accelerates amyloid formation and alters amylin fiber structure
Q64982156Deamidation and isomerization liability analysis of 131 clinical-stage antibodies.
Q108503122Deamidation drives molecular aging of the SARS-CoV-2 spike protein receptor-binding motif
Q57817264Deamidation of Amino Acids on the Surface of Adeno-Associated Virus Capsids Leads to Charge Heterogeneity and Altered Vector Function
Q50047009Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study.
Q42635838Deamidation of alpha-synuclein
Q33947742Deamidation of human proteins
Q35896428Deamidation reactions of protonated asparagine and glutamine investigated by ion spectroscopy.
Q36476874Deamidation: Differentiation of aspartyl from isoaspartyl products in peptides by electron capture dissociation
Q30884168Deamidations in recombinant human phenylalanine hydroxylase. Identification of labile asparagine residues and functional characterization of Asn --> Asp mutant forms
Q38901019Detection, evaluation and minimization of nonenzymatic deamidation in proteomic sample preparation
Q38281208Differentiating N-terminal aspartic and isoaspartic acid residues in peptides.
Q30986578Differentiation and Semiquantitative Analysis of an Isoaspartic Acid in Human α-Crystallin by Postsource Decay in a Curved Field Reflectron
Q37982946Differentiation of isomeric amino acid residues in proteins and peptides using mass spectrometry.
Q35555590Does deamidation cause protein unfolding? A top-down tandem mass spectrometry study
Q26830466Early implementation of QbD in biopharmaceutical development: a practical example
Q37361931Effect of N-1 and N-2 residues on peptide deamidation rate in solution and solid state
Q30378308Effect of protein structure on deamidation rate in the Fc fragment of an IgG1 monoclonal antibody.
Q50974872Effects of UV radiation on the lipids and proteins of bacteria studied by mid-infrared spectroscopy.
Q33224077Effects of spontaneous deamidation on the cytotoxic activity of the Bacillus anthracis protective antigen
Q35043190Electron transfer dissociation with supplemental activation to differentiate aspartic and isoaspartic residues in doubly charged peptide cations.
Q46114334Elucidation of degradants in acidic peak of cation exchange chromatography in an IgG1 monoclonal antibody formed on long-term storage in a liquid formulation
Q28074848Emerging Roles of Protein Deamidation in Innate Immune Signaling
Q40135575Energetics-based protein profiling on a proteomic scale: identification of proteins resistant to proteolysis
Q37853324Engineering the variable region of therapeutic IgG antibodies.
Q47552404Estimation of Chronological Age from Postmortem Tissues Based on Amino Acid Racemization.
Q33701885Evidence of the involvement of asparagine deamidation in the formation of cyclodextrin glycosyltransferase isoforms in Paenibacillus sp. RB01.
Q85041697Generation of a humanized anti-glypican 3 antibody by CDR grafting and stability optimization
Q38092837Getting away with murder: how does the BCL-2 family of proteins kill with immunity?
Q40187189Glutamine deamidation: an indicator of antiquity, or preservational quality?
Q42287023Glycine N-methylation in NGR-Tagged Nanocarriers Prevents Isoaspartate formation and Integrin Binding without Impairing CD13 Recognition and Tumor Homing
Q33293308Haptoglobin comprises about 10% of granule protein extracted from bovine granulocytes isolated from healthy cattle
Q91646668Hypoxia-Induced Degenerative Protein Modifications Associated with Aging and Age-Associated Disorders
Q42076718Identification of aspartic and isoaspartic acid residues in amyloid beta peptides, including Abeta1-42, using electron-ion reactions
Q30384596Independent highly sensitive characterization of asparagine deamidation and aspartic acid isomerization by sheathless CZE-ESI-MS/MS.
Q51581444Ion-Exchange Chromatography to Analyze Components of a Clostridium difficile Vaccine.
Q30319326Isoaspartate-containing amyloid precursor protein-derived peptides alter efficacy and specificity of potential beta-secretases
Q50651934LERLIC-MS/MS for In-depth Characterization and Quantification of Glutamine and Asparagine Deamidation in Shotgun Proteomics.
Q33568235Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
Q92344983Machine Learning Enables Accurate Prediction of Asparagine Deamidation Probability and Rate
Q35015203Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides
Q43662252Mass spectrometric evaluation of synthetic peptides as primary structure models for peptide and protein deamidation
Q34628096Mass spectrometric peptide analysis of 2DE-separated mouse spinal cord and rat hippocampus proteins suggests an NGxG motif of importance for in vivo deamidation
Q91633980Mechanism of protein cleavage at asparagine leading to protein-protein cross-links
Q35935173Mechanistic Analysis of the Effect of Deamidation on the Immunogenicity of Anthrax Protective Antigen
Q33916089Monocyte adhesion to atherosclerotic matrix proteins is enhanced by Asn-Gly-Arg deamidation
Q43276079Multivariate analysis of the sequence dependence of asparagine deamidation rates in peptides
Q44974666N+1 Engineering of an Aspartate Isomerization Hotspot in the Complementarity-Determining Region of a Monoclonal Antibody
Q37388959N- and O-glycosylation in the murine synaptosome
Q36095201N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa
Q102060953NGOME-Lite: Proteome-wide prediction of spontaneous protein deamidation highlights differences between taxa
Q38790836Negative ion cleavages of (M-H)(-) anions of peptides. Part 3. Post-translational modifications
Q89450487Off-pathway 3D-structure provides protection against spontaneous Asn/Asp isomerization: shielding proteins Achilles heel
Q38900143Old Proteins in Man: A Field in its Infancy
Q61813228Optimised methods (SDS/PAGE and LC-MS) reveal deamidation in all examined transglutaminase-mediated reactions
Q37727752Overcoming challenges and opening new opportunities in glycoproteomics
Q44607670Overexpression of l-Isoaspartate O-Methyltransferase in Escherichia coli Increases Heat Shock Survival by a Mechanism Independent of Methyltransferase Activity
Q37563576Oxidation-induced structural changes of ceruloplasmin foster NGR motif deamidation that promotes integrin binding and signaling
Q52929895Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting.
Q46489987Post-translational modifications of chicken myelin basic protein charge components.
Q24304928Postnatal deamidation of 4E-BP2 in brain enhances its association with raptor and alters kinetics of excitatory synaptic transmission
Q35870617Prediction of Spontaneous Protein Deamidation from Sequence-Derived Secondary Structure and Intrinsic Disorder.
Q43419013Prediction of primary structure deamidation rates of asparaginyl and glutaminyl peptides through steric and catalytic effects
Q35248578Prediction of protein deamidation rates from primary and three-dimensional structure
Q94956418Profiling the 'deamidome' of complex biosamples using mixed-mode chromatography-coupled tandem mass spectrometry
Q38667917Protein asparagine deamidation prediction based on structures with machine learning methods
Q34024381Protein deamidation
Q57449695Protein deamidation in biopharmaceutical manufacture: understanding, control and impact
Q36028759Protein post-translational modifications and misfolding: new concepts in heart failure
Q37154147Quantification of angiotensin II-regulated proteins in urine of patients with polycystic and other chronic kidney diseases by selected reaction monitoring.
Q80334852Quantitating the relative abundance of isoaspartyl residues in deamidated proteins by electron capture dissociation
Q33231198Quantitative measurement of deamidation in lens betaB2-crystallin and peptides by direct electrospray injection and fragmentation in a Fourier transform mass spectrometer
Q91233305Rapid Prediction of Deamidation Rates of Proteins to Assess Their Long-Term Stability Using Hydrogen Exchange-Mass Spectrometry
Q96438342Recent Progress in the Analysis of Protein Deamidation Using Mass Spectrometry
Q92539618Recombinant Subunit Rotavirus Trivalent Vaccine Candidate: Physicochemical Comparisons and Stability Evaluations of Three Protein Antigens
Q31101047Recombinant p53 displays heterogeneity during isoelectric focusing
Q41048721Repair of isoaspartate formation modulates the interaction of deamidated 4E-BP2 with mTORC1 in brain
Q28473640Retracted: Protein Isoaspartate Methyltransferase Prevents Apoptosis Induced by Oxidative Stress in Endothelial Cells: Role of Bcl-Xl Deamidation and Methylation
Q98463585Revising the mechanism of p75NTR activation: intrinsically monomeric state of death domains invokes the "helper" hypothesis
Q45969140Sequence and Solution Effects on the Prevalence of d-Isomers Produced by Deamidation.
Q84071467Sequence-specific predictive chromatography to assist mass spectrometric analysis of asparagine deamidation and aspartate isomerization in peptides
Q52672439Soft tissue removal by maceration and feeding of Dermestes sp.: impact on morphological and biomolecular analyses of dental tissues in forensic medicine.
Q27642690Solution structure and stability of the full-length excisionase from bacteriophage HK022
Q93089168Spontaneous Isomerization of Long-Lived Proteins Provides a Molecular Mechanism for the Lysosomal Failure Observed in Alzheimer's Disease
Q27649627Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Q35165265Spontaneous cyclization of polypeptides with a penultimate Asp, Asn or isoAsp at the N-terminus and implications for cleavage by aminopeptidase
Q45862901Spontaneous formation of L-isoaspartate and gain of function in fibronectin.
Q37734089Stability of IgG isotypes in serum
Q38042847Stable liquid glucagon formulations for rescue treatment and bi-hormonal closed-loop pancreas
Q27651575Structural Investigation of a Phosphorylation-Catalyzed, Isoaspartate-Free, Protein Succinimide: Crystallographic Structure of Post-Succinimide His15Asp Histidine-Containing Protein † ‡
Q34041520Structural and functional roles of deamidation of N146 and/or truncation of NH2- or COOH-termini in human αB-crystallin.
Q30373836Structural effects of protein aging: terminal marking by deamidation in human triosephosphate isomerase.
Q65000083Structure Based Prediction of Asparagine Deamidation Propensity in Monoclonal Antibodies.
Q99410783Structure of the bacterial ribosome at 2 Å resolution
Q21564048Structure, function, aging and turnover of aggrecan in the intervertebral disc
Q93012934Structure-Function Assessment and High-Throughput Quantification of Site-Specific Aspartate Isomerization in Monoclonal Antibody Using a Novel Analytical Tool Kit
Q28539968Structure-based prediction of asparagine and aspartate degradation sites in antibody variable regions
Q44893900Structure-dependent nonenzymatic deamidation of glutaminyl and asparaginyl pentapeptides
Q47700311Studies on the Proteome of Human Hair - Identification of Histones and Deamidated Keratins.
Q33703464Substrates of the Arabidopsis thaliana protein isoaspartyl methyltransferase 1 identified using phage display and biopanning
Q38801839Systemic and tumor-targeted delivery of siRNA by cyclic NGR and isoDGR motif-containing peptides
Q41692568The Separation and Quantitation of Peptides with and without Oxidation of Methionine and Deamidation of Asparagine Using Hydrophilic Interaction Liquid Chromatography with Mass Spectrometry (HILIC-MS).
Q91419222The biophysics of superoxide dismutase-1 and amyotrophic lateral sclerosis
Q34264152The conformational locking of asparagine.
Q39937281The microRNA 15a/16-1 cluster down-regulates protein repair isoaspartyl methyltransferase in hepatoma cells: implications for apoptosis regulation
Q46129198Thermodynamics and mechanism of protonated asparagine decomposition
Q41993753Thiol-disulfide exchange in peptides derived from human growth hormone
Q33814180Tissue transglutaminase-mediated glutamine deamidation of beta-amyloid peptide increases peptide solubility, whereas enzymatic cross-linking and peptide fragmentation may serve as molecular triggers for rapid peptide aggregation
Q34219743Top-down study of β2-microglobulin deamidation
Q37373293Toward proteome-scale identification and quantification of isoaspartyl residues in biological samples.
Q99852510Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system
Q41345453Unexpected functional implication of a stable succinimide in the structural stability of Methanocaldococcus jannaschii glutaminase.
Q42742487Use of 18O labels to monitor deamidation during protein and peptide sample processing
Q87010810Use of imaged capillary isoelectric focusing technique in development of diphtheria toxin mutant CRM197
Q34463262Use of site-directed mutagenesis to model the effects of spontaneous deamidation on the immunogenicity of Bacillus anthracis protective antigen

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