| scholarly article | Q13442814 |
| P50 | author | Julio Montaner | Q1712378 |
| Bruce D. Walker | Q23770361 | ||
| Chanson J Brumme | Q30389061 | ||
| Bette Korber | Q30505218 | ||
| Nicole Frahm | Q85203972 | ||
| David Heckerman | Q89548037 | ||
| Richard Harrigan | Q92586267 | ||
| James J Szinger | Q117221641 | ||
| Celia Chui | Q117221668 | ||
| Robert S Hogg | Q37837778 | ||
| Christian Brander | Q42392436 | ||
| Zabrina L Brumme | Q55135335 | ||
| Tanmoy Bhattacharya | Q55414889 | ||
| P2093 | author name string | Marcus Daniels | |
| Theresa Mo | |||
| Carl Kadie | |||
| Jonathan Carlson | |||
| P2860 | cites work | Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection | Q24564779 |
| Statistical significance for genomewide studies | Q24681264 | ||
| Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection | Q27477614 | ||
| Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition | Q28282470 | ||
| Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus | Q28302762 | ||
| SYFPEITHI: database for MHC ligands and peptide motifs | Q29616214 | ||
| Immunologic pressure within class I-restricted cognate human immunodeficiency virus epitopes during highly active antiretroviral therapy | Q33737646 | ||
| The HLA system. First of two parts | Q34023681 | ||
| De novo generation of escape variant-specific CD8+ T-cell responses following cytotoxic T-lymphocyte escape in chronic human immunodeficiency virus type 1 infection | Q34045616 | ||
| Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution | Q34092644 | ||
| Diversity considerations in HIV-1 vaccine selection | Q34136023 | ||
| Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection | Q35542741 | ||
| Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution | Q35634318 | ||
| Constraints on HIV-1 evolution and immunodominance revealed in monozygotic adult twins infected with the same virus | Q36228343 | ||
| Maintenance of viral suppression in HIV-1-infected HLA-B*57+ elite suppressors despite CTL escape mutations | Q36238124 | ||
| Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection | Q36399423 | ||
| Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response | Q36399559 | ||
| Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA. | Q36403330 | ||
| Frequent transmission of cytotoxic-T-lymphocyte escape mutants of human immunodeficiency virus type 1 in the highly HLA-A24-positive Japanese population | Q36683968 | ||
| Immune escape precedes breakthrough human immunodeficiency virus type 1 viremia and broadening of the cytotoxic T-lymphocyte response in an HLA-B27-positive long-term-nonprogressing child | Q36684112 | ||
| Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities | Q36954486 | ||
| CD8+ T cell epitope-flanking mutations disrupt proteasomal processing of HIV-1 Nef. | Q40370296 | ||
| Cytotoxic T lymphocyte lysis inhibited by viable HIV mutants | Q41269554 | ||
| Cytotoxic T-cell activity antagonized by naturally occurring HIV-1 Gag variants | Q41462011 | ||
| Leveraging information across HLA alleles/supertypes improves epitope prediction | Q42628685 | ||
| HIV-1 Nef is preferentially recognized by CD8 T cells in primary HIV-1 infection despite a relatively high degree of genetic diversity | Q43438499 | ||
| Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope | Q45421129 | ||
| Characterization of HLA-B57-restricted human immunodeficiency virus type 1 Gag- and RT-specific cytotoxic T lymphocyte responses | Q45753709 | ||
| Methods for comparing a DNA sequence with a protein sequence. | Q48057023 | ||
| Update of the drug resistance mutations in HIV-1: Fall 2006. | Q53250474 | ||
| Loss of Viral Control in Early HIV‐1 Infection Is Temporally Associated with Sequential Escape from CD8+T Cell Responses and Decrease in HIV–1–Specific CD4+and CD8+T Cell Frequencies | Q56876055 | ||
| The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage | Q56879701 | ||
| Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations | Q56880587 | ||
| Evolution and transmission of stable CTL escape mutations in HIV infection | Q56880602 | ||
| Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patient leads to selection for mutant HIV variants and subsequent disease progression | Q71803154 | ||
| Definition of specific peptide motifs for four major HLA-A alleles | Q72332860 | ||
| Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS | Q73034306 | ||
| Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level | Q74171545 | ||
| Rates of disease progression by baseline CD4 cell count and viral load after initiating triple-drug therapy | Q77230682 | ||
| CD8 T-cell responses in early HIV-1 infection are skewed towards high entropy peptides | Q81415844 | ||
| P275 | copyright license | Creative Commons CC0 License | Q6938433 |
| P6216 | copyright status | copyrighted, dedicated to the public domain by copyright holder | Q88088423 |
| P433 | issue | 7 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e94 | |
| P577 | publication date | 2007-07-01 | |
| P1433 | published in | PLOS Pathogens | Q283209 |
| P1476 | title | Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1 | |
| P478 | volume | 3 |
| Q36908259 | A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: potential impact on CTL epitopes |
| Q37254045 | A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control |
| Q21245213 | Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes |
| Q33606936 | Adaptive changes in HIV-1 subtype C proteins during early infection are driven by changes in HLA-associated immune pressure. |
| Q34302276 | Adaptive evolution of HIV at HLA epitopes is associated with ethnicity in Canada |
| Q30386701 | Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs. |
| Q33687232 | Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics |
| Q42187290 | Aminopeptidase substrate preference affects HIV epitope presentation and predicts immune escape patterns in HIV-infected individuals |
| Q27655357 | Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance |
| Q40851822 | Association between a naturally arising polymorphism within a functional region of HIV-1 Nef and disease progression in chronic HIV-1 infection |
| Q36540029 | CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo |
| Q26781511 | Challenges and Opportunities for T-Cell-Mediated Strategies to Eliminate HIV Reservoirs |
| Q92701175 | Clinical and evolutionary consequences of HIV adaptation to HLA: implications for vaccine and cure |
| Q34456570 | Co-operative additive effects between HLA alleles in control of HIV-1 |
| Q33680623 | CodonTest: modeling amino acid substitution preferences in coding sequences |
| Q36414604 | Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1. |
| Q33966673 | Counteraction of HLA-C-mediated immune control of HIV-1 by Nef. |
| Q42211756 | Cytotoxic T-lymphocyte escape mutations identified by HLA association favor those which escape and revert rapidly |
| Q28610686 | Declines in highly active antiretroviral therapy initiation at CD4 cell counts ≤ 200 cells/μL and the contribution of diagnosis of HIV at CD4 cell counts ≤ 200 cells/μL in British Columbia, Canada |
| Q27675464 | Distinct HIV-1 Escape Patterns Selected by Cytotoxic T Cells with Identical Epitope Specificity |
| Q34308788 | Early immune adaptation in HIV-1 revealed by population-level approaches |
| Q34295972 | Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection |
| Q42115872 | Effects of naturally-arising HIV Nef mutations on cytotoxic T lymphocyte recognition and Nef's functionality in primary macrophages. |
| Q46972940 | Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort |
| Q35535663 | Evolutionary gamut of in vivo Gag substitutions during early HIV-1 subtype C infection |
| Q34172358 | Exploiting knowledge of immune selection in HIV-1 to detect HIV-specific CD8 T-cell responses |
| Q37095345 | Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China |
| Q58767928 | Extensive host immune adaptation in a concentrated North American HIV epidemic |
| Q34295981 | Fluidity of HIV-1-specific T-cell responses during acute and early subtype C HIV-1 infection and associations with early disease progression |
| Q33394563 | Frequent toggling between alternative amino acids is driven by selection in HIV-1 |
| Q36845893 | Genetic characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes |
| Q57285044 | Genotypic and Mechanistic Characterization of Subtype-specific HIV Adaptation to Host Cellular Immunity |
| Q34594538 | HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes |
| Q36531107 | HIV-1 Nef in macrophage-mediated disease pathogenesis. |
| Q36926697 | HIV-1 Nef: at the crossroads |
| Q34808574 | HIV-1 clade B pol evolution following primary infection |
| Q42286083 | HIV-1 drug resistance-associated mutations among antiretroviral-naive Thai patients with chronic HIV-1 infection |
| Q36748059 | HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load |
| Q35184356 | HLA-B57 and gender influence the occurrence of tuberculosis in HIV infected people of south India |
| Q37051649 | HLA-associated clinical progression correlates with epitope reversion rates in early human immunodeficiency virus infection |
| Q33494829 | HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins |
| Q33612214 | HLA-associated immune pressure on Gag protein in CRF01_AE-infected individuals and its association with plasma viral load |
| Q37127920 | HLA-associated viral mutations are common in human immunodeficiency virus type 1 elite controllers |
| Q37051248 | HLA/KIR restraint of HIV: surviving the fittest |
| Q35214354 | High-avidity, high-IFNγ-producing CD8 T-cell responses following immune selection during HIV-1 infection |
| Q39427526 | Host genetic variation and HIV disease: from mapping to mechanism |
| Q37713976 | Host-specific adaptation of HIV-1 subtype B in the Japanese population |
| Q37110723 | Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals. |
| Q30424366 | Human immunodeficiency virus vaccine trials |
| Q36404189 | Human leukocyte antigen (HLA) class I down-regulation by human immunodeficiency virus type 1 negative factor (HIV-1 Nef): what might we learn from natural sequence variants? |
| Q36943363 | Human leukocyte antigen class I genotypes in relation to heterosexual HIV type 1 transmission within discordant couples |
| Q28394085 | Human leukocyte antigens and HIV type 1 viral load in early and chronic infection: predominance of evolving relationships |
| Q34657787 | Immune activation promotes evolutionary conservation of T-cell epitopes in HIV-1. |
| Q35798108 | Immune-mediated attenuation of HIV-1 |
| Q36984267 | Impact of pre-adapted HIV transmission. |
| Q101564241 | Impaired ability of Nef to counteract SERINC5 is associated with reduced plasma viremia in HIV-infected individuals |
| Q33963989 | Impaired replication capacity of acute/early viruses in persons who become HIV controllers |
| Q34070640 | Improved virological outcomes in British Columbia concomitant with decreasing incidence of HIV type 1 drug resistance detection |
| Q37200459 | Influence of HLA-C expression level on HIV control |
| Q30710200 | Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways |
| Q35567805 | Key role of human leukocyte antigen in modulating human immunodeficiency virus progression: An overview of the possible applications |
| Q92523449 | Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study |
| Q33879572 | Maintenance or emergence of chronic phase secondary cytotoxic T lymphocyte responses after loss of acute phase immunodominant responses does not protect SIV-infected rhesus macaques from disease progression |
| Q36315090 | Mapping protease inhibitor resistance to human immunodeficiency virus type 1 sequence polymorphisms within patients. |
| Q36898637 | Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection |
| Q37808509 | Models of RNA virus evolution and their roles in vaccine design |
| Q104486611 | Mucosal IL-4R antagonist HIV vaccination with SOSIP-gp140 booster can induce high-quality cytotoxic CD4+/CD8+ T cells and humoral responses in macaques |
| Q34016464 | Nef-specific CD45RA+ CD8+ T cells secreting MIP-1beta but not IFN-gamma are associated with nonprogressive HIV-1 infection. |
| Q35616586 | Newly Exerted T Cell Pressures on Mutated Epitopes following Transmission Help Maintain Consensus HIV-1 Sequences |
| Q54233740 | Novel HLA class I associations with HIV-1 control in a unique genetically admixed population. |
| Q33517082 | Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1. |
| Q33385995 | Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. |
| Q37785949 | Prime-boost immunization with poxvirus or adenovirus vectors as a strategy to develop a protective vaccine for HIV-1. |
| Q34841789 | Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations |
| Q34034422 | Protease polymorphisms in HIV-1 subtype CRF01_AE represent selection by antiretroviral therapy and host immune pressure |
| Q37099792 | Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1. |
| Q33747537 | Quantifying the impact of human immunodeficiency virus-1 escape from cytotoxic T-lymphocytes |
| Q35949014 | Rapid HIV-1 Disease Progression in Individuals Infected with a Virus Adapted to Its Host Population |
| Q34042642 | Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections |
| Q46281150 | Resistance of Major Histocompatibility Complex Class B (MHC-B) to Nef-Mediated Downregulation Relative to that of MHC-A Is Conserved among Primate Lentiviruses and Influences Antiviral T Cell Responses in HIV-1-Infected Individuals |
| Q54599332 | Reverse transcriptase mutation K65N confers a decreased replication capacity to HIV-1 in comparison to K65R due to a decreased RT processivity. |
| Q42209395 | Role of individual's T-cell immunome in controlling HIV-1 progression |
| Q27313564 | SIV genome-wide pyrosequencing provides a comprehensive and unbiased view of variation within and outside CD8 T lymphocyte epitopes |
| Q41390297 | Selection pressure in CD8⁺ T-cell epitopes in the pol gene of HIV-1 infected individuals in Colombia. A bioinformatic approach |
| Q36433533 | Short Communication: Nucleotide Variation and Positively Selected Sites in HIV Type 1 Reverse Transcriptase Among Heterosexual Transmission Pairs |
| Q36791067 | Silent mutations are selected in HIV-1 reverse transcriptase and affect enzymatic efficiency. |
| Q31151639 | Statistical resolution of ambiguous HLA typing data |
| Q27680531 | Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection |
| Q27684028 | Switching and emergence of CTL epitopes in HIV-1 infection |
| Q30486286 | T-cell epitope prediction: rescaling can mask biological variation between MHC molecules |
| Q37333743 | T-cell vaccine strategies for human immunodeficiency virus, the virus with a thousand faces |
| Q33490243 | The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes |
| Q37927233 | The emerging role of HLA-C in HIV-1 infection |
| Q33378477 | The evolutionary selective advantage of HIV-1 escape variants and the contribution of escape to the HLA-associated risk of AIDS progression |
| Q33379106 | The specificity and polymorphism of the MHC class I prevents the global adaptation of HIV-1 to the monomorphic proteasome and TAP. |
| Q41218508 | Therapeutic vaccination in chronic hepatitis B: preclinical studies in the woodchuck |
| Q45173390 | Timing and evolution of the most recent common ancestor of the Korean clade HIV subtype B based on nef and vif sequences |
| Q37158259 | Toward an AIDS vaccine |
| Q42549345 | Tracking the culprit: HIV-1 evolution and immune selection revealed by single-genome amplification |
| Q35244904 | Translation of HLA-HIV associations to the cellular level: HIV adapts to inflate CD8 T cell responses against Nef and HLA-adapted variant epitopes |
| Q37145270 | Transmission and long-term stability of compensated CD8 escape mutations |
| Q36639954 | Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients |
| Q33680395 | Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing |
| Q40634933 | Transmitted/Founder HIV-1 Subtype C Viruses Show Distinctive Signature Patterns in Vif, Vpr, and Vpu That Are Under Subsequent Immune Pressure During Early Infection |
| Q36086711 | Uncommon pathways of immune escape attenuate HIV-1 integrase replication capacity |
| Q37325420 | Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study |
| Q35015691 | Variable HIV peptide stability in human cytosol is critical to epitope presentation and immune escape |
| Q99411881 | Variation in HIV-1 Nef function within and among viral subtypes reveals genetically separable antagonism of SERINC3 and SERINC5 |
| Q33615145 | Viral adaptation to immune selection pressure by HLA class I-restricted CTL responses targeting epitopes in HIV frameshift sequences |
| Q34270602 | Viral diversity and diversification of major non-structural genes vif, vpr, vpu, tat exon 1 and rev exon 1 during primary HIV-1 subtype C infection |
| Q47593460 | Weaker HLA Footprints on HIV in the Unique and Highly Genetically Admixed Host Population of Mexico |
| Q41814777 | Widespread impact of HLA restriction on immune control and escape pathways of HIV-1 |
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