| scholarly article | Q13442814 |
| P50 | author | Thomas Ellis | Q42772189 |
| Xiao Wang | Q56826467 | ||
| P2093 | author name string | James J Collins | |
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| A Saccharomyces gene family involved in invasive growth, cell-cell adhesion, and mating | Q27933651 | ||
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| Sequences That Regulate the Divergent GAL1-GAL10 Promoter in Saccharomyces cerevisiae | Q29547797 | ||
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| Engineered gene circuits. | Q34997456 | ||
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| HSP90/70 chaperones are required for rapid nucleosome removal upon induction of the GAL genes of yeast | Q36498441 | ||
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| Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy | Q37114251 | ||
| Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels | Q37321463 | ||
| A tunable synthetic mammalian oscillator | Q40009888 | ||
| A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells | Q40100735 | ||
| Mechanisms underlying expression of Tn10 encoded tetracycline resistance | Q40572946 | ||
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| P433 | issue | 5 | |
| P304 | page(s) | 465-471 | |
| P577 | publication date | 2009-04-19 | |
| P1433 | published in | Nature Biotechnology | Q1893837 |
| P1476 | title | Diversity-based, model-guided construction of synthetic gene networks with predicted functions | |
| P478 | volume | 27 |
| Q47219915 | A brief history of synthetic biology |
| Q36215279 | A computational method for the investigation of multistable systems and its application to genetic switches |
| Q35101641 | A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits |
| Q24652476 | A feeling for the numbers in biology |
| Q36806738 | A geometrical approach to control and controllability of nonlinear dynamical networks |
| Q42106139 | A load driver device for engineering modularity in biological networks. |
| Q34072043 | A model for improving microbial biofuel production using a synthetic feedback loop |
| Q42188617 | A quantitative framework for the forward design of synthetic miRNA circuits |
| Q35674667 | A sensing array of radically coupled genetic ‘biopixels’ |
| Q30651233 | A structured population modeling framework for quantifying and predicting gene expression noise in flow cytometry data |
| Q34292208 | A synthetic biology framework for programming eukaryotic transcription functions. |
| Q33812368 | A synthetic circuit for selectively arresting daughter cells to create aging populations |
| Q30495928 | A synthetic three-color scaffold for monitoring genetic regulation and noise |
| Q38124736 | A systems biology approach to optimising hosts for industrial protein production. |
| Q34234539 | A unified design space of synthetic stripe-forming networks. |
| Q28834528 | Addressing biological uncertainties in engineering gene circuits |
| Q28246745 | Advances and computational tools towards predictable design in biological engineering |
| Q42118085 | Amplification of small molecule-inducible gene expression via tuning of intracellular receptor densities |
| Q34708793 | An End-to-End Workflow for Engineering of Biological Networks from High-Level Specifications |
| Q43463742 | Analysis and Design of a Genetic Circuit for Dynamic Metabolic Engineering |
| Q42237288 | AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. |
| Q34710175 | AutoBioCAD: Full Biodesign Automation of Genetic Circuits |
| Q34708771 | Automated Design of Genetic Toggle Switches with Predetermined Bistability |
| Q37436696 | Automated design of synthetic ribosome binding sites to control protein expression |
| Q31003282 | Automatic Design of Digital Synthetic Gene Circuits |
| Q28741726 | Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks |
| Q34247331 | Automatic design of synthetic gene circuits through mixed integer non-linear programming |
| Q33579512 | Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation |
| Q53514546 | Bacterial XylRs and synthetic promoters function as genetically encoded xylose biosensors in Saccharomyces cerevisiae |
| Q36298754 | Balance of XYL1 and XYL2 expression in different yeast chassis for improved xylose fermentation |
| Q38017924 | Biomolecular computing systems: principles, progress and potential |
| Q52649385 | Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications. |
| Q36437062 | Bottom-up construction of in vitro switchable memories. |
| Q34387409 | Bottom-up engineering of biological systems through standard bricks: a modularity study on basic parts and devices |
| Q28085326 | Bridging the gap: a roadmap to breaking the biological design barrier |
| Q36813712 | Build to understand: synthetic approaches to biology |
| Q47368383 | Building Predictive Models of Genetic Circuits Using the Principle of Maximum Caliber |
| Q38028407 | Building Synthetic Systems to Learn Nature’s Design Principles |
| Q34557687 | Building synthetic gene circuits from combinatorial libraries: screening and selection strategies. |
| Q92733592 | COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors |
| Q36124640 | Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods |
| Q34247945 | Characterization of an inducible promoter in different DNA copy number conditions. |
| Q50134382 | Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch |
| Q37804961 | Classifying DNA assembly protocols for devising cellular architectures |
| Q50501491 | Cloning and characterization of a panel of constitutive promoters for applications in pathway engineering in Saccharomyces cerevisiae. |
| Q46626607 | Cloning and evaluation of different constitutive promoters in the oleaginous yeast Rhodosporidium toruloides |
| Q64231516 | Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways |
| Q34002167 | Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors |
| Q52642701 | Construction of hybrid regulated mother-specific yeast promoters for inducible differential gene expression |
| Q37981787 | Construction of synthetic regulatory networks in yeast. |
| Q39017466 | Creating biological nanomaterials using synthetic biology |
| Q86642084 | Creating small transcription activating RNAs |
| Q37829924 | DNA assembly for synthetic biology: from parts to pathways and beyond. |
| Q35212025 | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
| Q55097609 | Design principles for nuclease-deficient CRISPR-based transcriptional regulators. |
| Q34078874 | Develop reusable and combinable designs for transcriptional logic gates |
| Q44654169 | Development and characterization of AND-gate dynamic controllers with a modular synthetic GAL1 core promoter in Saccharomyces cerevisiae |
| Q37499669 | Direct Analysis of Gene Synthesis Reactions Using Solid-State Nanopores. |
| Q33907616 | Directed Evolution of Promoters and Tandem Gene Arrays for Customizing RNA Synthesis Rates and Regulation |
| Q37416828 | Directed evolution: new parts and optimized function |
| Q34504403 | Dynamic and structural constraints in signal propagation by regulatory networks. |
| Q47107934 | Efflux Pump Control Alters Synthetic Gene Circuit Function. |
| Q21145326 | Emergence of switch-like behavior in a large family of simple biochemical networks |
| Q37962354 | Emerging biomedical applications of synthetic biology |
| Q39422654 | Engineered E. coli That Detect and Respond to Gut Inflammation through Nitric Oxide Sensing |
| Q35876112 | Engineered biosynthesis of natural products in heterologous hosts |
| Q38084923 | Engineered genetic information processing circuits |
| Q33976285 | Engineering a portable riboswitch-LacP hybrid device for two-way gene regulation |
| Q38009596 | Engineering and control of biological systems: A new way to tackle complex diseases. |
| Q36074977 | Engineering and ethical perspectives in synthetic biology. Rigorous, robust and predictable designs, public engagement and a modern ethical framework are vital to the continued success of synthetic biology |
| Q38924442 | Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology |
| Q38010535 | Engineering multicellular traits in synthetic microbial populations |
| Q36967848 | Engineering of regulated stochastic cell fate determination |
| Q38067993 | Engineering of synthetic intercellular communication systems |
| Q42092679 | Engineering scalable biological systems |
| Q33590931 | Eukaryotic systems broaden the scope of synthetic biology |
| Q33877449 | Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast |
| Q57016798 | Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms |
| Q35692901 | Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells |
| Q35597773 | Expression-level dependent perturbation of cell proteostasis and nuclear morphology by aggregation-prone polyglutamine proteins. |
| Q34395078 | Fine-tuning gene networks using simple sequence repeats. |
| Q43187919 | Five hard truths for synthetic biology |
| Q38182184 | Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review |
| Q34273084 | Foundations for the design and implementation of synthetic genetic circuits |
| Q33875191 | GAP Promoter Library for Fine-Tuning of Gene Expression in Pichia pastoris |
| Q34723380 | Gateway Vectors for Efficient Artificial Gene Assembly In Vitro and Expression in Yeast Saccharomyces cerevisiae |
| Q33514861 | Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression |
| Q42787778 | Gene networks and liar paradoxes |
| Q27318486 | Gene networks of fully connected triads with complete auto-activation enable multistability and stepwise stochastic transitions |
| Q93162445 | Gene networks that compensate for crosstalk with crosstalk |
| Q34520533 | Genetic circuit design automation |
| Q98196860 | Genetic circuit design automation for yeast |
| Q33532340 | GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs |
| Q34614856 | Genome engineering |
| Q41992077 | Half-life measurements of chemical inducers for recombinant gene expression |
| Q30974536 | How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch |
| Q55222050 | Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES. |
| Q35909908 | Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia |
| Q37023758 | Improvement of the reverse tetracycline transactivator by single amino acid substitutions that reduce leaky target gene expression to undetectable levels |
| Q50262826 | Improving fold activation of small transcription activating RNAs (STARs) with rational RNA engineering strategies |
| Q29307507 | Informing Biological Design by Integration of Systems and Synthetic Biology |
| Q54323930 | Insulating gene circuits from context by RNA processing |
| Q34498475 | Introduction of customized inserts for s-treamlined assembly and optimization of BioBrick synthetic genetic circuits. |
| Q44717284 | Introduction to focus issue: quantitative approaches to genetic networks |
| Q41369640 | Iterative plug-and-play methodology for constructing and modifying synthetic gene networks |
| Q33812404 | Logic integration of mRNA signals by an RNAi-based molecular computer |
| Q40015098 | Logical stochastic resonance with correlated internal and external noises in a synthetic biological logic block. |
| Q27331437 | Mapping the environmental fitness landscape of a synthetic gene circuit |
| Q90287681 | Massive computational acceleration by using neural networks to emulate mechanism-based biological models |
| Q37403978 | Mathematical modeling and synthetic biology. |
| Q43887954 | MicroRNA Circuits for Transcriptional Logic |
| Q38693849 | Microfluidics and microbial engineering |
| Q36235112 | Model-guided combinatorial optimization of complex synthetic gene networks. |
| Q28481407 | Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity |
| Q38298715 | Multi-Faceted Characterization of a Novel LuxR-Repressible Promoter Library for Escherichia coli |
| Q35954575 | Multi-objective optimization framework to obtain model-based guidelines for tuning biological synthetic devices: an adaptive network case. |
| Q33970692 | Multiobjective H2/H∞ synthetic gene network design based on promoter libraries |
| Q33830378 | Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. |
| Q84983666 | Nanobiotechnology: Scaling up synthetic gene circuits |
| Q39919274 | Next-generation synthetic gene networks |
| Q51607759 | Noise-aided computation within a synthetic gene network through morphable and robust logic gates |
| Q35024820 | One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy. |
| Q37844002 | Opportunities for yeast metabolic engineering: Lessons from synthetic biology |
| Q88576413 | Optimal bioprocess design through a gene regulatory network - Growth kinetic hybrid model: Towards replacing Monod kinetics |
| Q47161059 | Optimizing DNA assembly based on statistical language modelling |
| Q42534025 | Overpowering the component problem |
| Q51549378 | Parallel on-chip gene synthesis and application to optimization of protein expression |
| Q38019716 | Perspectives on the automatic design of regulatory systems for synthetic biology. |
| Q35989384 | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
| Q41626507 | PhiReX: a programmable and red light-regulated protein expression switch for yeast |
| Q42084694 | Physical constraints on biological integral control design for homeostasis and sensory adaptation. |
| Q51595611 | Practical limits for reverse engineering of dynamical systems: a statistical analysis of sensitivity and parameter inferability in systems biology models |
| Q26991685 | Predicting translation initiation rates for designing synthetic biology |
| Q39652879 | Prediction of fine-tuned promoter activity from DNA sequence |
| Q96022845 | Predictive biology: modelling, understanding and harnessing microbial complexity |
| Q33536831 | Probability distributed time delays: integrating spatial effects into temporal models |
| Q28748996 | Programming cells: towards an automated 'Genetic Compiler' |
| Q51566164 | Promoter Reliability in Modular Transcriptional Networks |
| Q38034483 | Promoter engineering: Recent advances in controlling transcription at the most fundamental level |
| Q48733771 | Quantitative estimation of activity and quality for collections of functional genetic elements |
| Q34747424 | Quorum-sensing crosstalk-driven synthetic circuits: from unimodality to trimodality. |
| Q46097857 | RNA processing enables predictable programming of gene expression |
| Q92768304 | RNA-Guided Recombinase-Cas9 Fusion Targets Genomic DNA Deletion and Integration |
| Q37417013 | Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly |
| Q41444663 | Rational design of modular circuits for gene transcription: A test of the bottom-up approach |
| Q39637310 | Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology |
| Q34108156 | Rationally designed logic integration of regulatory signals in mammalian cells |
| Q35974421 | Rationally reduced libraries for combinatorial pathway optimization minimizing experimental effort. |
| Q35153535 | Re-engineering multicloning sites for function and convenience |
| Q47160766 | Re-using biological devices: a model-aided analysis of interconnected transcriptional cascades designed from the bottom-up. |
| Q52431915 | Recent Advances in Metabolic Engineering of Saccharomyces cerevisiae: New Tools and Their Applications |
| Q36279891 | Regulating synthetic gene networks in 3D materials |
| Q37028264 | Reverse Engineering Validation using a Benchmark Synthetic Gene Circuit in Human Cells |
| Q34352128 | Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities |
| Q37700679 | Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems |
| Q34433193 | Ribozyme-based insulator parts buffer synthetic circuits from genetic context |
| Q35610464 | Robust Design of Biological Circuits: Evolutionary Systems Biology Approach |
| Q33562217 | Robust dynamical pattern formation from a multifunctional minimal genetic circuit |
| Q51616570 | Robust model matching design methodology for a stochastic synthetic gene network |
| Q37522778 | Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. |
| Q33995378 | Robust synthetic gene network design via library-based search method |
| Q36160722 | Robust, tunable genetic memory from protein sequestration combined with positive feedback |
| Q52321813 | Sign epistasis caused by hierarchy within signalling cascades |
| Q35692350 | Signal-to-Noise Ratio Measures Efficacy of Biological Computing Devices and Circuits |
| Q34001312 | SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs |
| Q51116246 | Synthetic Biogenesis of Bacterial Amyloid Nanomaterials with Tunable Inorganic-Organic Interfaces and Electrical Conductivity. |
| Q37925394 | Synthetic Biology Moving into the Clinic |
| Q34829709 | Synthetic Biology: A Bridge between Artificial and Natural Cells |
| Q38081904 | Synthetic Biology: Advancing the Design of Diverse Genetic Systems |
| Q39206961 | Synthetic Biology: Engineering Living Systems from Biophysical Principles |
| Q39155164 | Synthetic Botany. |
| Q36223937 | Synthetic Core Promoters as Universal Parts for Fine-Tuning Expression in Different Yeast Species |
| Q47160645 | Synthetic Promoters and Transcription Factors for Heterologous Protein Expression in Saccharomyces cerevisiae |
| Q33954134 | Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity |
| Q64231486 | Synthetic Switches and Regulatory Circuits in Plants |
| Q64947796 | Synthetic Toolkit for Complex Genetic Circuit Engineering in Saccharomyces cerevisiae. |
| Q38121104 | Synthetic approaches to study transcriptional networks and noise in mammalian systems |
| Q35057524 | Synthetic biology for therapeutic applications |
| Q37754036 | Synthetic biology in the analysis and engineering of signaling processes |
| Q28085024 | Synthetic biology outside the cell: linking computational tools to cell-free systems |
| Q28078320 | Synthetic biology to access and expand nature's chemical diversity |
| Q38019240 | Synthetic biology – the state of play |
| Q35907569 | Synthetic biology: advancing biological frontiers by building synthetic systems |
| Q33958771 | Synthetic biology: applications come of age |
| Q35988630 | Synthetic biology: insights into biological computation. |
| Q31059198 | Synthetic biology: mapping the scientific landscape |
| Q34675593 | Synthetic biology: putting synthesis into biology |
| Q37691251 | Synthetic biology: tools to design, build, and optimize cellular processes |
| Q37629608 | Synthetic biology: understanding biological design from synthetic circuits |
| Q39813265 | Synthetic biosensing systems |
| Q47919222 | Synthetic chimeras with orthogonal ribosomal proteins increase translation yields by recruiting mRNA for translation as measured by profiling active ribosomes |
| Q33529580 | Synthetic design of strong promoters |
| Q57148418 | Synthetic gene regulation for independent external induction of the pseudohyphal growth phenotype |
| Q26747209 | Synthetic promoter design for new microbial chassis |
| Q26826954 | Synthetic therapeutic gene circuits in mammalian cells |
| Q35011529 | Systematic approach to Escherichia coli cell population control using a genetic lysis circuit |
| Q38153035 | Systems approaches for synthetic biology: a pathway toward mammalian design |
| Q37679194 | Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering |
| Q37874348 | Systems metabolic engineering for chemicals and materials |
| Q54483777 | Taming Living Logic Using Formal Methods |
| Q42630018 | Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases |
| Q34789242 | The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum |
| Q51566067 | The Ribosome Binding Site Calculator |
| Q33605059 | The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms |
| Q37542425 | The impact of synthetic biology on drug discovery |
| Q33599575 | The synthetic integron: an in vivo genetic shuffling device |
| Q37893112 | The zero‐sum game of pathway optimization: Emerging paradigms for tuning gene expression |
| Q37708521 | Toward design-based engineering of industrial microbes |
| Q37663602 | Toward engineering synthetic microbial metabolism |
| Q34280185 | Towards the rational design of synthetic cells with prescribed population dynamics |
| Q90857569 | Transcriptional programming using engineered systems of transcription factors and genetic architectures |
| Q37349865 | Transcriptional regulatory circuits: predicting numbers from alphabets |
| Q90597859 | Transient hysteresis and inherent stochasticity in gene regulatory networks |
| Q34451621 | Tunable Promoters in Synthetic and Systems Biology |
| Q24606465 | Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas |
| Q33812384 | Tuning and controlling gene expression noise in synthetic gene networks. |
| Q37247748 | Tuning response curves for synthetic biology. |
| Q24630346 | Tuning the dials of Synthetic Biology |
| Q47424197 | Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors. |
| Q37787559 | Using Synthetic Biology to Understand the Evolution of Gene Expression |
| Q34570672 | Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology |
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