Chromatin organization of gammaherpesvirus latent genomes

scientific article

Chromatin organization of gammaherpesvirus latent genomes is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/J.BBAGRM.2009.10.004
P932PMC publication ID2839031
P698PubMed publication ID19853673
P5875ResearchGate publication ID38033137

P2093author name stringPaul M Lieberman
Italo Tempera
P2860cites workTranslating the Histone CodeQ22065840
Latently expressed human herpesvirus 8-encoded interferon regulatory factor 2 inhibits double-stranded RNA-activated protein kinaseQ24290751
The ABCs of SMC proteins: two-armed ATPases for chromosome condensation, cohesion, and repairQ24292316
Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-BQ24293248
Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritanceQ24297783
A widely expressed transcription factor with multiple DNA sequence specificity, CTCF, is localized at chromosome segment 16q22.1 within one of the smallest regions of overlap for common deletions in breast and prostate cancersQ24317542
Human herpesvirus 8 LANA interacts with proteins of the mSin3 corepressor complex and negatively regulates Epstein-Barr virus gene expression in dually infected PEL cellsQ24527215
Protein interactions targeting the latency-associated nuclear antigen of Kaposi's sarcoma-associated herpesvirus to cell chromosomesQ24538878
The insulation of genes from external enhancers and silencing chromatinQ24540238
Identification of the gene encoding the major latency-associated nuclear antigen of the Kaposi's sarcoma-associated herpesvirusQ24561400
MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3BQ24564757
Identification of a novel cellular transcriptional repressor interacting with the latent nuclear antigen of Kaposi's sarcoma-associated herpesvirusQ24646461
Epstein-Barr virus-induced miR-155 attenuates NF-kappaB signaling and stabilizes latent virus persistenceQ24648180
A viral microRNA functions as an orthologue of cellular miR-155Q24652947
The 222- to 234-kilodalton latent nuclear protein (LNA) of Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) is encoded by orf73 and is a component of the latency-associated nuclear antigenQ24672438
Kaposi's sarcoma-associated herpesvirus encodes an ortholog of miR-155Q24681400
Epstein-Barr virus nuclear protein 2 (EBNA2) binds to a component of the human SNF-SWI complex, hSNF5/Ini1Q24681418
Plasticity of DNA replication initiation in Epstein-Barr virus episomesQ24793031
Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiaeQ24794908
The language of covalent histone modificationsQ27860931
Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator proteinQ28116036
Architecture of the human origin recognition complexQ28200779
Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1Q28208502
Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by gemininQ28213116
CTCF is a uniquely versatile transcription regulator linked to epigenetics and diseaseQ28214592
Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi's sarcomaQ28242984
Transcription and RNAi in heterochromatic gene silencingQ28256342
Epigenotypes of latent herpesvirus genomesQ28257829
Identification of virus-encoded microRNAsQ28259309
Kaposi's sarcoma-associated herpesvirus-like DNA sequences in AIDS-related body-cavity-based lymphomasQ28299069
Transgenic RNAi reveals essential function for CTCF in H19 gene imprintingQ28590627
The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiaeQ29614854
Epstein-Barr virus: 40 years onQ29617969
Kaposi's sarcoma-associated herpesvirus-like DNA sequences in multicentric Castleman's diseaseQ29619158
SMC protein complexes and the maintenance of chromosome integrity.Q30332521
Epstein-Barr virus latency switch in human B-cells: a physico-chemical modelQ33296308
DNA methylation and the Epstein-Barr virusQ33765683
Identification of kaposin (open reading frame K12) as a human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus) transforming geneQ33784194
A cluster of latently expressed genes in Kaposi's sarcoma-associated herpesvirusQ33784966
The minimal replicator of Epstein-Barr virus oriP.Q33804269
A complex translational program generates multiple novel proteins from the latently expressed kaposin (K12) locus of Kaposi's sarcoma-associated herpesvirus.Q33815534
Latent nuclear antigen of Kaposi's sarcoma-associated herpesvirus interacts with RING3, a homolog of the Drosophila female sterile homeotic (fsh) geneQ33824419
Kaposi's sarcoma-associated herpesvirus latency-associated nuclear antigen 1 mediates episome persistence through cis-acting terminal repeat (TR) sequence and specifically binds TR DNA.Q33838228
Cell cycle regulation of chromatin at an origin of DNA replicationQ33841707
DNA binding and modulation of gene expression by the latency-associated nuclear antigen of Kaposi's sarcoma-associated herpesvirusQ33853499
Efficient persistence of extrachromosomal KSHV DNA mediated by latency-associated nuclear antigenQ33859518
Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirusQ33883910
Drosophila nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut geneQ37277044
Association of Epstein-Barr virus with nasopharyngeal carcinoma and current status of development of cancer-derived cell lines.Q37319420
Dynamic chromatin boundaries delineate a latency control region of Epstein-Barr virusQ37596770
Promoter switching in Epstein-Barr virus during the initial stages of infection of B lymphocytesQ37707304
The pathogenesis of Burkitt's lymphomaQ37888967
Methylation status of the Epstein-Barr virus (EBV) BamHI W latent cycle promoter and promoter activity: analysis with novel EBV-positive Burkitt and lymphoblastoid cell linesQ39290705
Evidence that protein binding specifies sites of DNA demethylationQ39444301
Establishment of an oriP replicon is dependent upon an infrequent, epigenetic eventQ39459627
A new primary effusion lymphoma-derived cell line yields a highly infectious Kaposi's sarcoma herpesvirus-containing supernatantQ39539612
Specific methylation patterns in two control regions of Epstein-Barr virus latency: the LMP-1-coding upstream regulatory region and an origin of DNA replication (oriP).Q39579096
Differential regulation of the overlapping Kaposi's sarcoma-associated herpesvirus vGCR (orf74) and LANA (orf73) promotersQ39602154
Promoter-proximal regulatory elements involved in oriP-EBNA1-independent and -dependent activation of the Epstein-Barr virus C promoter in B-lymphoid cell linesQ39603122
Variant chromatin structure of the oriP region of Epstein-Barr virus and regulation of EBER1 expression by upstream sequences and oriP.Q39603362
Initiation of DNA replication within oriP is dispensable for stable replication of the latent Epstein-Barr virus chromosome after infection of established cell linesQ39612332
Differential hyperacetylation of histones H3 and H4 upon promoter-specific recruitment of EBNA2 in Epstein-Barr virus chromatin.Q39776571
Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactionsQ39860615
Plasmid maintenance of derivatives of oriP of Epstein-Barr virusQ39868910
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulatorsQ40020777
Three pathways of Epstein-Barr virus gene activation from EBNA1-positive latency in B lymphocytesQ40048949
Functional limits of oriP, the Epstein-Barr virus plasmid origin of replicationQ40116177
Symmetrical localization of extrachromosomally replicating viral genomes on sister chromatidsQ40150286
Disruption of Kaposi's sarcoma-associated herpesvirus latent nuclear antigen leads to abortive episome persistenceQ40163096
Regulation of Epstein-Barr virus latency type by the chromatin boundary factor CTCF.Q40274387
oriP is essential for EBNA gene promoter activity in Epstein-Barr virus-immortalized lymphoblastoid cell lines.Q35867579
Adherin: key to the cohesin ring and cornelia de Lange syndromeQ35905587
Origins of bidirectional replication of Epstein-Barr virus: models for understanding mammalian origins of DNA synthesisQ35951662
Epstein-Barr virus exploits BSAP/Pax5 to achieve the B-cell specificity of its growth-transforming programQ36098840
The pleiotropic effects of Kaposi's sarcoma herpesvirusQ36346099
Viruses and microRNAsQ36493262
Nucleosomal structure of Epstein-Barr virus DNA in transformed cell linesQ36493421
Cell cycle association of the retinoblastoma protein Rb and the histone demethylase LSD1 with the Epstein-Barr virus latency promoter Cp.Q36498238
Host-cell-determined methylation of specific Epstein-Barr virus promoters regulates the choice between distinct viral latency programsQ36564877
Methylation of discrete sites within the enhancer region regulates the activity of the Epstein-Barr virus BamHI W promoter in Burkitt lymphoma linesQ36655826
The plasmid replicon of Epstein-Barr virus: mechanistic insights into efficient, licensed, extrachromosomal replication in human cells.Q36756512
Epstein-Barr virus gene expression in oral hairy leukoplakia.Q36771882
The many faces of the origin recognition complexQ36805011
A promoter of Epstein-Barr virus that can function during latent infection can be transactivated by EBNA-1, a viral protein required for viral DNA replication during latent infection.Q36828303
Multiple EBNA1-binding sites are required to form an EBNA1-dependent enhancer and to activate a minimal replicative origin within oriP of Epstein-Barr virus.Q36828339
trans activation of an Epstein-Barr viral transcriptional enhancer by the Epstein-Barr viral nuclear antigen 1.Q36899288
Epstein-Barr virus nuclear protein 2 interacts with p300, CBP, and PCAF histone acetyltransferases in activation of the LMP1 promoterQ37156071
ORC, MCM, and histone hyperacetylation at the Kaposi's sarcoma-associated herpesvirus latent replication originQ40276488
The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.Q40318272
Inefficient establishment of KSHV latency suggests an additional role for continued lytic replication in Kaposi sarcoma pathogenesis.Q40364647
The latency-associated nuclear antigen of Kaposi's sarcoma-associated herpesvirus interacts preferentially with the terminal repeats of the genome in vivo and this complex is sufficient for episomal DNA replicationQ40644381
Epstein-Barr virus-associated Burkitt lymphomagenesis selects for downregulation of the nuclear antigen EBNA2.Q40705440
The Kaposi's sarcoma-associated herpesvirus latency-associated nuclear antigen binds to specific sequences at the left end of the viral genome through its carboxy-terminusQ40746913
Elevated expression of c-myc in lymphoblastoid cells does not support an Epstein-Barr virus latency III-to-I switchQ40767564
Antagonistic effects of c-myc and Epstein-Barr virus latent genes on the phenotype of human B cellsQ40784262
Cell growth inhibition by the multifunctional multivalent zinc-finger factor CTCF.Q40785917
The expression pattern of Epstein-Barr virus latent genes in vivo is dependent upon the differentiation stage of the infected B cellQ40843575
Silencing and heritable domains of gene expressionQ41021015
The coupling of synthesis and partitioning of EBV's plasmid replicon is revealed in live cellsQ41112391
Propagation of a human herpesvirus from AIDS-associated Kaposi's sarcomaQ41134075
Lytic growth of Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) in cultureQ41225141
Chromatin profiling of Epstein-Barr virus latency control regionQ41867337
Expression of Kaposi's sarcoma-associated herpesvirus G protein-coupled receptor monocistronic and bicistronic transcripts in primary effusion lymphomasQ42656894
Epstein-Barr virus episome stability is coupled to a delay in replication timingQ43179751
EBNA1 efficiently assembles on chromatin containing the Epstein-Barr virus latent origin of replicationQ43505203
Epigenetics of latent Epstein-Barr virus genomes: high resolution methylation analysis of the bidirectional promoter region of latent membrane protein 1 and 2B genesQ43639212
Complex protein-DNA dynamics at the latent origin of DNA replication of Epstein-Barr virusQ45721968
Visualization of DNA replication on individual Epstein-Barr virus episomesQ45734474
Replication of Epstein-Barr virus within the epithelial cells of oral "hairy" leukoplakia, an AIDS-associated lesionQ45837679
Chromatin structure of Epstein-Barr virusQ45838261
Role of Rb family in the epigenetic definition of chromatin.Q46503012
Transformation of primary human endothelial cells by Kaposi's sarcoma-associated herpesvirusQ47675996
EBV persistence in memory B cells in vivo.Q52037383
Nucleosomes positioned by ORC facilitate the initiation of DNA replication.Q52542122
The terminal repeats and latency-associated nuclear antigen of herpesvirus saimiri are essential for episomal persistence of the viral genome.Q54539750
Erratum: A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferasesQ57562732
The Transcriptional Activity of cAMP Response Element-binding Protein-binding Protein Is Modulated by the Latency Associated Nuclear Antigen of Kaposi's Sarcoma-associated HerpesvirusQ57662902
Latent nuclear antigen of Kaposi's sarcoma herpesvirus/human herpesvirus-8 induces and relocates RING3 to nuclear heterochromatin regionsQ60709837
Kaposi's sarcoma-associated herpesvirus infects endothelial and spindle cellsQ71563744
The latency-associated nuclear antigen tethers the Kaposi's sarcoma-associated herpesvirus genome to host chromosomes in body cavity-based lymphoma cellsQ73184792
The role of Kaposi's sarcoma-associated herpesvirus (KSHV/HHV-8) in lymphoproliferative diseasesQ77474503
Maintenance of heterochromatin by RNA interference of tandem repeatsQ79238300
Epigenetic regulation of the human retinoblastoma tumor suppressor gene promoter by CTCFQ79961217
Spectrum of Kaposi's sarcoma-associated herpesvirus, or human herpesvirus 8, diseasesQ33906970
NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations.Q33910158
Differences in B cell growth phenotype reflect novel patterns of Epstein-Barr virus latent gene expression in Burkitt's lymphoma cellsQ33929593
Epstein-Barr nuclear antigen 1 binds and destabilizes nucleosomes at the viral origin of latent DNA replicationQ33941808
Human DNA replication initiation factors, ORC and MCM, associate with oriP of Epstein-Barr virusQ33942957
Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein-Barr virusQ34081126
The KSHV latency-associated nuclear antigen: a multifunctional proteinQ34115568
Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspectsQ34120020
Latency-associated nuclear antigen (LANA) cooperatively binds to two sites within the terminal repeat, and both sites contribute to the ability of LANA to suppress transcription and to facilitate DNA replicationQ34128791
Host cell-dependent expression of latent Epstein-Barr virus genomes: regulation by DNA methylationQ34273467
Biology of Kaposi's sarcomaQ34292002
Patterns of gene expression and a transactivation function exhibited by the vGCR (ORF74) chemokine receptor protein of Kaposi's sarcoma-associated herpesvirusQ34333321
Functional dissection of latency-associated nuclear antigen 1 of Kaposi's sarcoma-associated herpesvirus involved in latent DNA replication and transcription of terminal repeats of the viral genome.Q34348453
The latency-associated nuclear antigen of Kaposi's sarcoma-associated herpesvirus supports latent DNA replication in dividing cellsQ34355092
The Kaposi's sarcoma-associated herpesvirus K12 transcript from a primary effusion lymphoma contains complex repeat elements, is spliced, and initiates from a novel promoterQ34359380
CTCF functions as a critical regulator of cell-cycle arrest and death after ligation of the B cell receptor on immature B cellsQ34470376
Kaposi's sarcoma-like tumors in a human herpesvirus 8 ORF74 transgenic mouseQ34471059
Molecular biology of Kaposi's sarcoma-associated herpesvirusQ34508530
Rapamycin inhibits the interleukin 10 signal transduction pathway and the growth of Epstein Barr virus B-cell lymphomasQ34536060
Genetic requirements for the episomal maintenance of oncogenic herpesvirus genomesQ34554716
Kaposi's sarcoma associated herpesvirus (KSHV) or human herpesvirus 8 (HHV8).Q34556281
SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cellsQ34558129
Epstein-Barr virus: exploiting the immune systemQ34572150
MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAsQ34593731
The origin recognition complex functions in sister-chromatid cohesion in Saccharomyces cerevisiae.Q34600944
The molecular pathology of Kaposi's sarcoma-associated herpesvirusQ34605505
X inactivation XplainedQ34687637
Transcriptional activation by EBV nuclear antigen 1 is essential for the expression of EBV's transforming genesQ35080523
The 'ORC cycle': a novel pathway for regulating eukaryotic DNA replicationQ35152182
From a single double helix to paired double helices and backQ35213838
Linking the epigenetic 'language' of covalent histone modifications to cancerQ35670206
An EBNA-1-dependent enhancer acts from a distance of 10 kilobase pairs to increase expression of the Epstein-Barr virus LMP geneQ35838226
Viral interactions with the Notch pathwayQ35853119
P433issue3-4
P407language of work or nameEnglishQ1860
P304page(s)236-245
P577publication date2009-10-22
P1433published inBiochimica et Biophysica ActaQ864239
P1476titleChromatin organization of gammaherpesvirus latent genomes
P478volume1799

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