| review article | Q7318358 |
| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1022660640 |
| P356 | DOI | 10.1038/NRM1647 |
| P8608 | Fatcat ID | release_dktunu2a3jckdfftghj52uggoq |
| P698 | PubMed publication ID | 15956979 |
| P2093 | author name string | James R Williamson | |
| Martha J Fedor | |||
| P2860 | cites work | Enzyme-Catalyzed Phosphoryl Transfer Reactions | Q22255662 |
| A general two-metal-ion mechanism for catalytic RNA | Q24562157 | ||
| Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid | Q24631528 | ||
| Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity | Q24679814 | ||
| Capture and visualization of a catalytic RNA enzyme-product complex using crystal lattice trapping and X-ray holographic reconstruction | Q27625218 | ||
| The structural basis of ribosome activity in peptide bond synthesis | Q27626414 | ||
| Crystal structure of the ribosome at 5.5 A resolution | Q27630949 | ||
| Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis | Q27631159 | ||
| Structural insights into peptide bond formation | Q27639505 | ||
| Transition state stabilization by a catalytic RNA | Q27639765 | ||
| The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage | Q27729430 | ||
| Three-dimensional structure of a hammerhead ribozyme | Q27730774 | ||
| Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme | Q27734150 | ||
| The structural basis of hammerhead ribozyme self-cleavage | Q27748930 | ||
| A preorganized active site in the crystal structure of the Tetrahymena ribozyme | Q27766124 | ||
| Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity | Q28189633 | ||
| Ribonuclease A | Q28201882 | ||
| The hairpin ribozyme: from crystal structure to function | Q28215410 | ||
| Control of gene expression by a natural metabolite-responsive ribozyme | Q28251218 | ||
| RNA catalytic properties of the minimum (-)sTRSV sequence | Q28278743 | ||
| The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone | Q28288958 | ||
| Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination | Q28295290 | ||
| Crystal structure of a phage Twort group I ribozyme-product complex | Q28296661 | ||
| Three metal ions at the active site of the Tetrahymena group I ribozyme | Q28315032 | ||
| Functional involvement of G8 in the hairpin ribozyme cleavage mechanism | Q28364046 | ||
| Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer | Q28769589 | ||
| Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism | Q29028221 | ||
| A second catalytic metal ion in group I ribozyme | Q30470964 | ||
| Comparative analysis of hairpin ribozyme structures and interference data | Q30678338 | ||
| The ribosome as an entropy trap | Q30930830 | ||
| Ions and RNA folding | Q30988822 | ||
| Structure and function of the hairpin ribozyme | Q33861637 | ||
| Ribozyme structures and mechanisms | Q34019400 | ||
| Biophysical and biochemical investigations of RNA catalysis in the hammerhead ribozyme | Q34149356 | ||
| Crystal structure of a self-splicing group I intron with both exons | Q34324406 | ||
| Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain | Q34362185 | ||
| Unusual resistance of peptidyl transferase to protein extraction procedures | Q34436822 | ||
| Catalytic strategies of the hepatitis delta virus ribozymes | Q34667466 | ||
| The role of metal ions in RNA catalysis | Q34749886 | ||
| Folding and activity of the hammerhead ribozyme | Q34804270 | ||
| The path to perdition is paved with protons | Q34894393 | ||
| Visualizing the structure and mechanism of a small nucleolytic ribozyme | Q34996778 | ||
| The hammerhead ribozyme | Q35003643 | ||
| After the ribosome structures: how does peptidyl transferase work? | Q35055506 | ||
| Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme | Q35071324 | ||
| Peptide bond formation on the ribosome: structure and mechanism | Q35165233 | ||
| RNA, the first macromolecular catalyst: the ribosome is a ribozyme | Q35204584 | ||
| The hairpin ribozyme | Q35614124 | ||
| A guide to ions and RNA structure | Q35670060 | ||
| The structure-function dilemma of the hammerhead ribozyme | Q36115496 | ||
| pK(a) perturbation in genomic Hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping | Q38291286 | ||
| Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction | Q38301567 | ||
| Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2'-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme | Q38321270 | ||
| Bond order and charge localization in nucleoside phosphorothioates | Q39493502 | ||
| Metal ion interaction with cosubstrate in self-splicing of group I introns | Q39719033 | ||
| Metal ions play a passive role in the hairpin ribozyme catalysed reaction | Q39721199 | ||
| A place in the world for RNA editing | Q40401635 | ||
| Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration | Q40515857 | ||
| Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes | Q41550164 | ||
| Tertiary structure stabilization promotes hairpin ribozyme ligation | Q41686849 | ||
| Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate | Q41703953 | ||
| Crystal structure of a group I intron splicing intermediate | Q41816647 | ||
| Artificial tertiary motifs stabilize trans-cleaving hammerhead ribozymes under conditions of submillimolar divalent ions and high temperatures | Q41939448 | ||
| The folding of the hairpin ribozyme: dependence on the loops and the junction | Q42070485 | ||
| Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis | Q42675353 | ||
| Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements. | Q43207204 | ||
| Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide | Q43617727 | ||
| Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme | Q43721912 | ||
| Catalytic roles for proton transfer and protonation in ribozymes | Q43722704 | ||
| Tertiary structure stability of the hairpin ribozyme in its natural and minimal forms: different energetic contributions from a ribose zipper motif | Q43733420 | ||
| Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme | Q44882244 | ||
| A conformational switch controls hepatitis delta virus ribozyme catalysis | Q44894635 | ||
| Role of an active site guanine in hairpin ribozyme catalysis probed by exogenous nucleobase rescue | Q44939516 | ||
| Substrate-assisted catalysis of peptide bond formation by the ribosome | Q45099790 | ||
| General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme | Q45744207 | ||
| Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module | Q45745245 | ||
| Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction | Q45858676 | ||
| MAP kinases in meiosis | Q46088503 | ||
| Direct Brønsted analysis of the restoration of activity to a mutant enzyme by exogenous amines | Q46334040 | ||
| Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation. | Q46618026 | ||
| The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release | Q47429251 | ||
| Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome. | Q54539576 | ||
| Fast Cleavage Kinetics of a Natural Hammerhead Ribozyme | Q58044980 | ||
| Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA | Q59066021 | ||
| A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage | Q73603192 | ||
| An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis | Q73661495 | ||
| Making the most of metal ions | Q73688403 | ||
| Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation | Q73998789 | ||
| A single adenosine with a neutral pKa in the ribosomal peptidyl transferase center | Q74152471 | ||
| A new metal ion interaction in the Tetrahymena ribozyme reaction revealed by double sulfur substitution | Q77318709 | ||
| Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases | Q77646667 | ||
| Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage | Q95751092 | ||
| P433 | issue | 5 | |
| P304 | page(s) | 399-412 | |
| P577 | publication date | 2005-05-01 | |
| P1433 | published in | Nature Reviews Molecular Cell Biology | Q1573120 |
| P1476 | title | The catalytic diversity of RNAs | |
| P478 | volume | 6 |
| Q89552694 | A Polyaddition Model for the Prebiotic Polymerization of RNA and RNA-Like Polymers |
| Q27673382 | A Transition-State Interaction Shifts Nucleobase Ionization toward Neutrality To Facilitate Small Ribozyme Catalysis |
| Q27644728 | A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization |
| Q51278089 | A divalent cation-dependent variant of the glmS ribozyme with stringent Ca2+ selectivity co-opts a preexisting nonspecific metal ion-binding site. |
| Q28264831 | A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene |
| Q34343244 | A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity |
| Q28757019 | A manganese-dependent ribozyme in the 3'-untranslated region of Xenopus Vg1 mRNA |
| Q41995782 | An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method |
| Q41963002 | An improved method for surface immobilisation of RNA: application to small non-coding RNA-mRNA pairing. |
| Q25255631 | Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method. |
| Q45356443 | Antofine analogues can inhibit tobacco mosaic virus assembly through small-molecule-RNA interactions |
| Q41675293 | Assessing the Potential Effects of Active Site Mg2+ Ions in the glmS Ribozyme-Cofactor Complex |
| Q30438980 | Atomic level architecture of group I introns revealed |
| Q38833059 | Attenuating HIV Tat/TAR-mediated protein expression by exploring the side chain length of positively charged residues. |
| Q28240090 | Backbone and nucleobase contacts to glucosamine-6-phosphate in the glmS ribozyme |
| Q27661496 | Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site |
| Q38923714 | Cellular Delivery of RNA Nanoparticles |
| Q43256741 | Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions. |
| Q37383012 | Characterization of Mg2+ Distributions around RNA in Solution. |
| Q47836962 | Charged probes: turn-on selective fluorescence for RNA. |
| Q34530574 | Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs |
| Q33606445 | Computational discovery of folded RNA domains in genomes and in vitro selected libraries |
| Q41210140 | Conformationally restricted nucleotides as a probe of structure-function relationships in RNA. |
| Q41507162 | Conservation and divergence of small RNA pathways and microRNAs in land plants. |
| Q39143128 | Coordination environment of a site-bound metal ion in the hammerhead ribozyme determined by 15N and 2H ESEEM spectroscopy. |
| Q25257465 | Core requirements for glmS ribozyme self-cleavage reveal a putative pseudoknot structure |
| Q27703505 | Crystal structure of a DNA catalyst |
| Q36716470 | DNA and RNA induced enantioselectivity in chemical synthesis. |
| Q34370143 | Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozyme |
| Q89393070 | Decoding on the ribosome depends on the structure of the mRNA phosphodiester backbone |
| Q33908985 | Defining the RNA internal loops preferred by benzimidazole derivatives via 2D combinatorial screening and computational analysis |
| Q47194252 | Design rules of synthetic non-coding RNAs in bacteria |
| Q36097546 | Differential Assembly of Catalytic Interactions within the Conserved Active Sites of Two Ribozymes |
| Q43143817 | Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme |
| Q33426376 | Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines |
| Q28714163 | Discovery and biological characterization of geranylated RNA in bacteria |
| Q30315572 | Dynamical Dimension to the Hofmeister Series: Insights from First-Principles Simulations |
| Q24633570 | Efficient ligation of the Schistosoma hammerhead ribozyme |
| Q34514049 | Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling. |
| Q36800450 | Electrostatic interactions in the hairpin ribozyme account for the majority of the rate acceleration without chemical participation by nucleobases |
| Q34452558 | Engineered external guide sequences effectively block viral gene expression and replication in cultured cells |
| Q35749522 | Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme |
| Q38974589 | Evolution of specific 3'-5'-linkages in RNA in pre-biotic soup: a new hypothesis |
| Q37308629 | Experimental analyses of the chemical dynamics of ribozyme catalysis |
| Q42216404 | Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling |
| Q35057522 | Extraordinary rates of transition metal ion-mediated ribozyme catalysis |
| Q46063708 | Functional analysis of hairpin ribozyme active site architecture |
| Q30481633 | Functional nucleic acid sensors |
| Q43201948 | General base catalysis for cleavage by the active-site cytosine of the hepatitis delta virus ribozyme: QM/MM calculations establish chemical feasibility |
| Q36768126 | Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery |
| Q33928557 | Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems |
| Q57252493 | Growth and division of active droplets provides a model for protocells |
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| Q90581413 | High-throughput determination of RNA structures |
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| Q33481558 | Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides |
| Q31107226 | Insight into the functional versatility of RNA through model-making with applications to data fitting |
| Q38455874 | Integration of kinetic isotope effect analyses to elucidate ribonuclease mechanism |
| Q33777789 | Intercalation as a means to suppress cyclization and promote polymerization of base-pairing oligonucleotides in a prebiotic world |
| Q46757795 | Interdependence, Reflexivity, Fidelity, Impedance Matching, and the Evolution of Genetic Coding |
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| Q44402746 | Kinetic Monte Carlo approach to RNA folding dynamics using structure-based models |
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| Q37124507 | Like polarity ion/ion reactions enable the investigation of specific metal interactions in nucleic acids and their noncovalent assemblies |
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| Q64229041 | Making Molecules with Clay: Layered Double Hydroxides, Pentopyranose Nucleic Acids and the Origin of Life |
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