Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks

scientific article published on 22 January 2015

Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1136/GUTJNL-2014-308820
P932PMC publication ID5166700
P698PubMed publication ID25614621
P5875ResearchGate publication ID271213616

P50authorPolly MatzingerQ3395388
Jacques RavelQ30093147
Xiaoxi DongQ61998704
P2093author name stringAmiran Dzutsev
Martin Schuster
Andrey Morgun
D Joseph Sexton
Natalia Shulzhenko
Renee L Greer
William Hsiao
P2860cites workThe RAST Server: rapid annotations using subsystems technologyQ21263157
Human intestinal lamina propria and intraepithelial lymphocytes express receptors specific for chemokines induced by inflammationQ22253403
Adverse Effects of Antimicrobials via Predictable or Idiosyncratic Inhibition of Host Mitochondrial ComponentsQ24616291
Antibiotics in early life alter the murine colonic microbiome and adiposityQ24630877
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomesQ24817116
Guarding the perimeter: protection of the mucosa by tissue-resident memory T cellsQ26822643
Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for BiologistsQ28083193
Gene network reconstruction reveals cell cycle and antiviral genes as major drivers of cervical cancerQ28119171
Induction of intestinal Th17 cells by segmented filamentous bacteriaQ28131638
Probiotics for the prevention and treatment of antibiotic-associated diarrhea: a systematic review and meta-analysisQ28266275
Molecular mechanisms of bacterial virulence elucidated using a Pseudomonas aeruginosa-Caenorhabditis elegans pathogenesis modelQ28297288
Contribution of the RsaL global regulator to Pseudomonas aeruginosa virulence and biofilm formationQ28492725
Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic ConsequencesQ29394736
Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasisQ29547656
The human microbiome: at the interface of health and diseaseQ29614801
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencingQ29615054
Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasisQ30920058
Antibiotic side effectsQ31974254
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbationQ33420665
Relating the metatranscriptome and metagenome of the human gut.Q33730723
Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview.Q33960783
Reverse-engineering human regulatory networksQ34026195
The multiple signaling systems regulating virulence in Pseudomonas aeruginosaQ34030980
Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarrayQ34055315
Principles and strategies for developing network models in cancerQ34171479
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesisQ34251928
Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthmaQ34261744
Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans.Q34360221
An archaeal origin of eukaryotes supports only two primary domains of lifeQ34391778
Clinical practice. Antibiotic-associated diarrheaQ34512995
Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficitsQ34596030
Microbe-Dependent and Nonspecific Effects of Procedures To Eliminate the Resident Microbiota from Drosophila melanogasterQ34615771
Depletion of Murine Intestinal Microbiota: Effects on Gut Mucosa and Epithelial Gene ExpressionQ34704203
Bridging immunity and lipid metabolism by gut microbiotaQ34887482
Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment.Q35050169
The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile InfectionQ35577842
B cell-intrinsic MyD88 signaling prevents the lethal dissemination of commensal bacteria during colonic damage.Q35784554
Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammationQ35874723
How antibiotics can make us sick: the less obvious adverse effects of antimicrobial chemotherapyQ35903212
Pathogen-host interactions in Pseudomonas aeruginosa pneumoniaQ36032639
Antibiotics, microbiota, and immune defenseQ36188444
Lethal inflammasome activation by a multidrug-resistant pathobiont upon antibiotic disruption of the microbiotaQ36319423
The intestinal environment of surgical injury transforms Pseudomonas aeruginosa into a discrete hypervirulent morphotype capable of causing lethal peritonitisQ36463413
Specific gut commensal flora locally alters T cell tuning to endogenous ligandsQ37108927
Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in Mammalian cells.Q37139410
Commensal DNA limits regulatory T cell conversion and is a natural adjuvant of intestinal immune responsesQ37267529
Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gutQ37515645
Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responsesQ37581953
Bacterial competition: surviving and thriving in the microbial jungleQ37641019
Physiological framework for the regulation of quorum sensing-dependent public goods in Pseudomonas aeruginosaQ37643421
Acyl-Homoserine Lactone Quorum Sensing: From Evolution to ApplicationQ38107502
Intestinal microbiota, diet and health.Q38127785
Transcription regulation of the rRNA gene by a multifunctional nucleolar protein, B23/nucleophosmin, through its histone chaperone activityQ39025073
Intestinal Microbiota Promote Enteric Virus Replication and Systemic PathogenesisQ39306213
Pseudomonas aeruginosa-induced apoptosis involves mitochondria and stress-activated protein kinasesQ39519588
Antibiotic-associated colitis—A review of 66 casesQ40019318
Antibiotic use in animal agricultureQ41673737
Antibiotic use and inflammatory bowel diseases in childhoodQ43947206
Interactional and functional centrality in transcriptional co-expression networksQ45215680
Long-term ecological impacts of antibiotic administration on the human intestinal microbiotaQ46878665
Differential in situ expression of the genes encoding the chemokines MCP-1 and RANTES in human inflammatory bowel diseaseQ71197864
The use of antibacterials in children: a report of the Specialist Advisory Committee on Antimicrobial Resistance (SACAR) Paediatric SubgroupQ80682934
Role of gut commensal microflora in the development of experimental autoimmune encephalomyelitisQ84749218
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)1732-1743
P577publication date2015-01-22
P1433published inGutQ5621669
P1476titleUncovering effects of antibiotics on the host and microbiota using transkingdom gene networks
P478volume64

Reverse relations

cites work (P2860)
Q97644533A Novel Cecropin-LL37 Hybrid Peptide Protects Mice Against EHEC Infection-Mediated Changes in Gut Microbiota, Intestinal Inflammation, and Impairment of Mucosal Barrier Functions
Q58566631A Task Force Against Local Inflammation and Cancer: Lymphocyte Trafficking to and Within the Skin
Q41325775A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.
Q36694188Abrupt suspension of probiotics administration may increase host pathogen susceptibility by inducing gut dysbiosis
Q37421598Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism
Q39606031Antibiotic-Associated Apoptotic Enterocolitis in the Absence of a Defined Pathogen: The Role of Intestinal Microbiota Depletion
Q47130145Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice
Q59796435Antibiotic-Induced Dysbiosis of Gut Microbiota Impairs Corneal Nerve Regeneration by Affecting CCR2-Negative Macrophage Distribution
Q92757722Antibiotic-induced dysbiosis of gut microbiota impairs corneal development in postnatal mice by affecting CCR2 negative macrophage distribution
Q57114440Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
Q40989594Antibiotic-treated versus germ-free rodents for microbiota transplantation studies
Q36105508Antibiotics as deep modulators of gut microbiota: between good and evil.
Q55072172Antimicrobial-Induced Cytopenia and Bone Marrow Hypocellularity in Patients with Cirrhosis.
Q47141405Arsenic exposure and intestinal microbiota in children from Sirajdikhan, Bangladesh
Q58746178Autoprobiotics as an Approach for Restoration of Personalised Microbiota
Q92374147Baseline microbiota composition modulates antibiotic-mediated effects on the gut microbiota and host
Q91625800CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont
Q35561392Changing the narrative on antibiotics
Q91474368Commensal microbiota drive the functional diversification of colon macrophages
Q49185989Commensal microbiota modulate gene expression in the skin.
Q61448787Comparative Evaluation of Microbiota Engraftment Following Fecal Microbiota Transfer in Mice Models: Age, Kinetic and Microbial Status Matter
Q90002880Defining Dysbiosis for a Cluster of Chronic Diseases
Q64255561Depletion of Gram-Positive Bacteria Impacts Hepatic Biological Functions During the Light Phase
Q37595455Differentially correlated genes in co-expression networks control phenotype transitions
Q58777508Early Disruption of the Microbiome Leading to Decreased Antioxidant Capacity and Epigenetic Changes: Implications for the Rise in Autism
Q51143827Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows.
Q52719208Effect of ceftriaxone on the intestinal epithelium and microbiota in neonatal mice
Q91933372Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)
Q39455595Eubiotic properties of rifaximin: Disruption of the traditional concepts in gut microbiota modulation
Q35961059Glyphosate, neurological diseases - and the scientific method
Q41329575Gnotobiotic Human Colon Ex Vivo.
Q41623268Gut Microbial Influences on the Mammalian Intestinal Stem Cell Niche.
Q39377601Gut Microbiome and Bone: to Build, Destroy, or Both?
Q90294140Gut Microbiota and Mucosal Immunity in the Neonate
Q28066301Gut Microbiota: A Contributing Factor to Obesity
Q46255444Gut microbes limit growth in House Sparrows nestlings (Passer domesticus), but not through limitations in digestive capacity
Q64259059Host and microbiome multi-omics integration: applications and methodologies
Q33575993Immune Responses to Broad-Spectrum Antibiotic Treatment and Fecal Microbiota Transplantation in Mice
Q28068832Implication of the intestinal microbiome in complications of cirrhosis
Q39365350Interplay between viruses and bacterial microbiota in cancer development
Q64123453Intestinal Serum amyloid A suppresses systemic neutrophil activation and bactericidal activity in response to microbiota colonization
Q88916539Intestinal microbiota enhances pancreatic carcinogenesis in preclinical models
Q35958154Investigating a holobiont: Microbiota perturbations and transkingdom networks
Q91283730Loss of function dysbiosis associated with antibiotics and high fat, high sugar diet
Q37686653Low-dose penicillin exposure in early life decreases Th17 and the susceptibility to DSS colitis in mice through gut microbiota modification
Q64986099Manipulation of Gut Microbiota Influences Immune Responses, Axon Preservation, and Motor Disability in a Model of Progressive Multiple Sclerosis.
Q57929730Metronidazole Causes Skeletal Muscle Atrophy and Modulates Muscle Chronometabolism
Q33865173Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha
Q95839238Microbiota-independent antiviral effects of antibiotics on poliovirus and coxsackievirus
Q59133579Mouse Microbiota Models: Comparing Germ-Free Mice and Antibiotics Treatment as Tools for Modifying Gut Bacteria
Q46353300Mucosa-associated microbiota signature in colorectal cancer
Q44917386Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota
Q37583957Potential mediators linking gut bacteria to metabolic health: a critical view
Q33843348Preparing the Gut with Antibiotics Enhances Gut Microbiota Reprogramming Efficiency by Promoting Xenomicrobiota Colonization
Q38617525Regulation of autoimmune myocarditis by host responses to the microbiome.
Q28083193Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists
Q92819148Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations
Q92416693Role of gut microbiota in type 2 diabetes pathophysiology
Q36277271Secondary bile acid-induced dysbiosis promotes intestinal carcinogenesis.
Q50194618Segment-specific responses of intestinal epithelium transcriptome to in-feed antibiotics in pigs
Q91719415Sexual Dimorphism in the Response to Broad-spectrum Antibiotics During T Cell-mediated Colitis
Q49864977Sieving through gut models of colonization resistance
Q64093570Stroke Dysbiosis Index (SDI) in Gut Microbiome Are Associated With Brain Injury and Prognosis of Stroke
Q95324959Synergistic depletion of gut microbial consortia, but not individual antibiotics, reduces amyloidosis in APPPS1-21 Alzheimer's transgenic mice
Q64263858The Antibiotic Neomycin Enhances Coxsackievirus Plaque Formation
Q55416760The Presence or Absence of Intestinal Microbiota Affects Lipid Deposition and Related Genes Expression in Zebrafish (Danio rerio).
Q92705098The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
Q26748672The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation
Q35989140Thymol and Carvacrol Affect Hybrid Tilapia through the Combination of Direct Stimulation and an Intestinal Microbiota-Mediated Effect: Insights from a Germ-Free Zebrafish Model
Q64108790Tokiinshi, a traditional Japanese medicine (Kampo), suppresses Panton-Valentine leukocidin production in the methicillin-resistant Staphylococcus aureus USA300 clone
Q46347679Topical Antimicrobial Treatments Can Elicit Shifts to Resident Skin Bacterial Communities and Reduce Colonization by Staphylococcus aureus Competitors.
Q52597757Topical application of aminoglycoside antibiotics enhances host resistance to viral infections in a microbiota-independent manner.
Q100465062Transcriptional programmes underlying cellular identity and microbial responsiveness in the intestinal epithelium
Q57301623Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions
Q57191954Transkingdom network reveals bacterial players associated with cervical cancer gene expression program
Q88538044Transplantation of human microbiota into conventional mice durably reshapes the gut microbiota
Q36163200Unexpected links reflect the noise in networks.
Q64355536l-Carnitine in omnivorous diets induces an atherogenic gut microbial pathway in humans

Search more.