BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons (scientific article)

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Q21266644	Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum
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Q28831331	Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species
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Q34993139	Comparative genomics reveals that a fish pathogenic bacterium Edwardsiella tarda has acquired the locus of enterocyte effacement (LEE) through horizontal gene transfer
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Q39599155	Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor
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Q27301802	Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T.
Q35913255	Complete Mitochondrial Genome of Three Bactrocera Fruit Flies of Subgenus Bactrocera (Diptera: Tephritidae) and Their Phylogenetic Implications
Q46304688	Complete characterization of new isolates of Neptunomonas phycophila leads to emend its description and opens possibilities of biotechnological applications.
Q35743077	Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae.
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Q89930481	Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease
Q67228712	Complete genome and plasmid sequence of a novel sp. BD59S, a parasporal protein synthesizing bacterium
Q90012493	Complete genome of Enterobacter sichuanensis strain SGAir0282 isolated from air in Singapore
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Q59792949	Complete genome of Rhizobium Norway, an ineffective micro-symbiont
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Q37240171	Complete genome sequence of Halomonas sp. R5-57.
Q50353369	Complete genome sequence of Lactobacillus rhamnosus Pen, a probiotic component of a medicine used in prevention of antibiotic-associated diarrhoea in children.
Q42738948	Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages
Q37633680	Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site
Q36044508	Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx.
Q36067311	Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia
Q35138717	Complete genome sequence of the biocontrol strain Pseudomonas protegens Cab57 discovered in Japan reveals strain-specific diversity of this species
Q37566567	Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33T and comparison with related Actinobacteria.
Q57215856	Complete genome sequence of uropathogenic Escherichia coli isolate UPEC 26-1
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Q58608731	Complete genome sequencing of Comamonas kerstersii 8943, a causative agent for peritonitis
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Q101166087	Culicidae evolutionary history focusing on the Culicinae subfamily based on mitochondrial phylogenomics
Q52661727	Cultivation-Independent and Cultivation-Dependent Analysis of Microbes in the Shallow-Sea Hydrothermal System Off Kueishantao Island, Taiwan: Unmasking Heterotrophic Bacterial Diversity and Functional Capacity.
Q64096638	Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona
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Q48219531	D-Alanylation of teichoic acids contributes to Lactobacillus plantarum-mediated Drosophila growth during chronic undernutrition
Q94451801	Deciphering the Structural Diversity and Classification of the Mobile Tigecycline Resistance Gene tet(X)-Bearing Plasmidome among Bacteria
Q92432604	Defining the human gut host-phage network through single-cell viral tagging
Q40486636	Deletion of toxin-antitoxin systems in the evolution of Shigella sonnei as a host-adapted pathogen
Q47117040	Delineating the Origins of Vibrio parahaemolyticus Isolated from Outbreaks of Acute Hepatopancreatic Necrosis Disease in Asia by the Use of Whole Genome Sequencing
Q50198891	Demonstration that a Klebsiella pneumoniae subsp. pneumoniae isolated from an insect (Nezara viridula) harbors a plasmid-borne type IV secretion system.
Q92700016	Detection and Genomic Characterization of a Morganella morganii Isolate From China That Produces NDM-5
Q42118662	Detection and genomic characterization of motility in Lactobacillus curvatus: confirmation of motility in a species outside the Lactobacillus salivarius clade
Q64912091	Detection of VIM-1-Producing Enterobacter cloacae and Salmonella enterica Serovars Infantis and Goldcoast at a Breeding Pig Farm in Germany in 2017 and Their Molecular Relationship to Former VIM-1-Producing S. Infantis Isolates in German Livestock P
Q36205566	Detection of a cfr(B) Variant in German Enterococcus faecium Clinical Isolates and the Impact on Linezolid Resistance in Enterococcus spp.
Q33901460	Detection of mcr-1-Carrying Escherichia coli Causing Bloodstream Infection in a New York City Hospital: Avian Origins, Human Concerns?
Q35992938	Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England and Wales
Q58700657	Development of a genome-informed loop-mediated isothermal amplification assay for rapid and specific detection of Xanthomonas euvesicatoria
Q47150323	Differential Effect of Newly Isolated Phages Belonging to PB1-Like, phiKZ-Like and LUZ24-Like Viruses against Multi-Drug Resistant Pseudomonas aeruginosa under Varying Growth Conditions.
Q36298959	Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)
Q36868416	Digital Droplet Multiple Displacement Amplification (ddMDA) for Whole Genome Sequencing of Limited DNA Samples
Q36250003	Discovery and metagenomic analysis of an anammox bacterial enrichment related to Candidatus "Brocadia caroliniensis" in a full-scale glycerol-fed nitritation-denitritation separate centrate treatment process
Q33650936	Discovery of chemoautotrophic symbiosis in the giant shipworm Kuphus polythalamia (Bivalvia: Teredinidae) extends wooden-steps theory.
Q92872195	Discrepant gene functional potential and cross-feedings of anammox bacteria Ca. Jettenia caeni and Ca. Brocadia sinica in response to acetate
Q101121025	Dissemination of Verona Integron-encoded Metallo-β-lactamase among clinical and environmental Enterobacteriaceae isolates in Ontario, Canada
Q52332492	Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA.
Q37293379	Divergent Isoprenoid Biosynthesis Pathways in Staphylococcus Species Constitute a Drug Target for Treating Infections in Companion Animals
Q55423161	Diversity and Antibiotic Susceptibility of Acinetobacter Strains From Milk Powder Produced in Germany.
Q61797956	Draft Genome Sequence of Listeria monocytogenes CIIMS-NV-3, a Strain Isolated from Vaginal Discharge of a Woman from Central India
Q42291673	Draft Genome Sequence of Permafrost Bacterium Nesterenkonia sp. Strain PF2B19, Revealing a Cold Adaptation Strategy and Diverse Biotechnological Potential.
Q92000652	Draft Genome Sequence of a Bioflocculant-Producing Bacterium, Citrobacter freundii IFO 13545
Q92379733	Draft Genome Sequence of an Escherichia coli Strain Harboring bla CTX-M-115, bla CMY-2, Aminoglycoside, Tetracycline, and Sulfonamide Resistance Genes, Isolated from a Costa Rican Wastewater Treatment Plant
Q40430339	Draft Genome Sequences of Three Escherichia coli Strains with Different In Vivo Pathogenicities in an Avian (Ascending) Infection Model of the Oviduct.
Q42078706	Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.
Q28595552	Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii
Q36507910	Draft genome sequence of Paenibacillus sp. strain A2.
Q34107901	Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35
Q33919432	Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3-1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia
Q99594227	Dynamics of bla KPC-2 dissemination from non-CG258 Klebsiella pneumoniae to other Enterobacterales via IncN plasmids in an area of high endemicity
Q89579256	Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France
Q28112089	ESBL-Producing and Macrolide-Resistant Shigella sonnei Infections among Men Who Have Sex with Men, England, 2015
Q91738368	Early OXA-48-Producing Enterobacterales Isolates Recovered in a Spanish Hospital Reveal a Complex Introduction Dominated by Sequence Type 11 (ST11) and ST405 Klebsiella pneumoniae Clones
Q40309314	Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity.
Q42363077	Emergence and genomic diversification of a virulent serogroup W:ST-2881(CC175) Neisseria meningitidis clone in the African meningitis belt
Q37615732	Emergence and spread of a new community-genotype methicillin-resistant Staphylococcus aureus clone in Colombia
Q92533813	Emergence of Almost Identical F36:A-:B32 Plasmids Carrying bla NDM-5 and qepA in Escherichia coli from Both Pakistan and Canada
Q57656298	Emergence of High-Level Colistin Resistance in an Acinetobacter baumannii Clinical Isolate Mediated by Inactivation of the Global Regulator H-NS
Q90265323	Emergence of IncX3 Plasmid-Harboring bla NDM- 5 Dominated by Escherichia coli ST48 in a Goose Farm in Jiangsu, China
Q51785086	Emergence of Klebsiella pneumoniae subspecies pneumoniae as a cause of septicaemia in pigs in England.
Q92429962	Emergence of Multidrug-Resistant Salmonella enterica Serovar Goldcoast Strains in Taiwan and International Spread of the ST358 Clone
Q35968715	Emergence of Serotype IV Group B Streptococcus Adult Invasive Disease in Manitoba and Saskatchewan, Canada, Is Driven by Clonal Sequence Type 459 Strains.
Q49791094	Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins.
Q40573566	Emergence of endemic MLST non-typeable vancomycin-resistant Enterococcus faecium
Q40182723	Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance
Q92060419	Emergence of vanA-Type Vancomycin-Resistant Enterococcus faecium ST 78 Strain with a rep2-Type Plasmid Carrying a Tn1546-Like Element Isolated from a Urinary Tract Infection in China
Q60044359	Endogenous endophthalmitis caused by a multidrug-resistant hypervirulent Klebsiella pneumoniae strain belonging to a novel single locus variant of ST23: first case report in China
Q57086720	Endosymbiont genomes yield clues of tubeworm success
Q40502317	Engineering a riboswitch-based genetic platform for the self-directed evolution of acid-tolerant phenotypes
Q91599328	Enhanced antibacterial effect of the novel T4-like bacteriophage KARL-1 in combination with antibiotics against multi-drug resistant Acinetobacter baumannii
Q89641068	Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli
Q33364636	Environmental emission of multiresistant Escherichia coli carrying the colistin resistance gene mcr-1 from German swine farms
Q90438417	Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms
Q33815077	Epidemic Klebsiella pneumoniae ST258 is a hybrid strain
Q96354391	Epidemiological and genetic characterization of Clostridium butyricum cultured from neonatal cases of necrotizing enterocolitis in China
Q41928155	Epidemiological characterization of a nosocomial outbreak of extended spectrum β-lactamase Escherichia coli ST-131 confirms the clinical value of core genome multilocus sequence typing
Q89736269	Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements
Q92733416	Essential Gene Clusters Involved in Copper Tolerance Identified in Acinetobacter baumannii Clinical and Environmental Isolates
Q60913075	Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing
Q36086746	Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster
Q35045573	Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
Q37116322	Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China
Q41751968	Evolution and comparative genomics of Campylobacter jejuni ST-677 clonal complex
Q46346609	Evolution and comparative genomics of pAQU-like conjugative plasmids in Vibrio species
Q90000740	Evolution of a 72-Kilobase Cointegrant, Conjugative Multiresistance Plasmid in Community-Associated Methicillin-Resistant Staphylococcus aureus Isolates from the Early 1990s
Q64255033	Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1
Q61779063	Evolution of tigecycline- and colistin-resistant CRKP (carbapenem-resistant Klebsiella pneumoniae) in vivo and its persistence in the GI tract
Q47101407	Evolutionary Context of Non-Sorbitol-Fermenting Shiga Toxin-Producing Escherichia coli O55:H7.
Q52675489	Evolutionary analysis of Porcine circovirus 3 (PCV3) indicates an ancient origin for its current strains and a worldwide dispersion.
Q34557099	Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Q91564855	Evolutionary insights into adaptation of Staphylococcus haemolyticus to human and non-human niches
Q37608009	Evolutionary origins of the emergent ST796 clone of vancomycin resistant Enterococcus faecium.
Q41688887	Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome.
Q40690304	Experimental induced avian E. coli salpingitis: Significant impact of strain and host factors on the clinical and pathological outcome.
Q89918152	Exploring the resistome, virulome and microbiome of drinking water in environmental and clinical settings
Q91949110	Exploring the success of Brazilian endemic clone Pseudomonas aeruginosa ST277 and its association with the CRISPR-Cas system type I-C
Q64087625	Extended Spectrum Beta-Lactamase-Producing Gram-Negative Bacteria Recovered From an Amazonian Lake Near the City of Belém, Brazil
Q90928445	Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes
Q38049496	Fighting outbreaks with bacterial genomics: case review and workflow proposal
Q40048072	Finegoldia magna isolated from orthopedic joint implant-associated infections.
Q92060449	First Report of OXA-181-Producing Klebsiella pneumoniae in China
Q40039087	First insights in the variability of Borrelia recurrentis genomes
Q52657159	Fitness Advantage of mcr-1-Bearing IncI2 and IncX4 Plasmids in Vitro.
Q92537745	Formulation of a Highly Effective Inoculant for Common Bean Based on an Autochthonous Elite Strain of Rhizobium leguminosarum bv. phaseoli, and Genomic-Based Insights Into Its Agronomic Performance
Q46246631	From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen.
Q63889320	From plants to nematodes: Serratia grimesii BXF1 genome reveals an adaptation to the modulation of multi-species interactions
Q34007290	From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions
Q57471268	From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus
Q30832738	Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.
Q56838667	Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice
Q38645718	Functional analysis of the first complete genome sequence of a multidrug resistant sequence type 2 Staphylococcus epidermidis.
Q89692195	GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Q33952196	Galleria mellonella infection model demonstrates high lethality of ST69 and ST127 uropathogenic E. coli.
Q36052601	Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum".
Q41538345	Genetic Characterization of a blaVEB-2-Carrying Plasmid in Vibrio parahaemolyticus
Q92570140	Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Q52629701	Genetic Relationships among Multidrug-Resistant Salmonella enterica Serovar Typhimurium Strains from Humans and Animals.
Q49828986	Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals.
Q30636490	Genetic characterization of clinical and environmental Vibrio parahaemolyticus from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages
Q35831283	Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas
Q99619816	Genetic factors related to the widespread dissemination of ST11 extensively drug-resistant carbapenemase-producing Klebsiella pneumoniae strains within hospital
Q42370912	Genetic plasticity of the Shigella virulence plasmid is mediated by intra- and inter-molecular events between insertion sequences
Q35797154	Genetically and Phenotypically Distinct Pseudomonas aeruginosa Cystic Fibrosis Isolates Share a Core Proteomic Signature
Q35852534	Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens
Q28602065	Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum"
Q42314354	Genome Analysis of the Carbapenem- and Colistin-Resistant Escherichia coli Isolate NRZ14408 Reveals Horizontal Gene Transfer Pathways towards Panresistance and Enhanced Virulence
Q37512529	Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India.
Q40226103	Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss, and Persistence of Genetic Elements In situ of the Infant Gut.
Q40166170	Genome Evolution to Penicillin Resistance in Serotype 3 Streptococcus pneumoniae by Capsular Switching
Q64230979	Genome Mining and Comparative Analysis of Causing Brain Abscess in a Child
Q49371103	Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype.
Q43032106	Genome Reduction for Niche Association in Campylobacter Hepaticus, A Cause of Spotty Liver Disease in Poultry.
Q90125982	Genome Sequence of an Emerging Salmonella enterica Serovar Infantis and Genomic Comparison with Other S. Infantis Strains
Q64228254	Genome Sequencing and Annotation of UBBS-14 to Ensure Probiotic Safety
Q34533654	Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors
Q40785098	Genome Structure of the Symbiont Bifidobacterium pseudocatenulatum CECT 7765 and Gene Expression Profiling in Response to Lactulose-Derived Oligosaccharides.
Q28646730	Genome Wide Re-Annotation of Caldicellulosiruptor saccharolyticus with New Insights into Genes Involved in Biomass Degradation and Hydrogen Production
Q33701081	Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow
Q34207972	Genome analysis of Campylobacter jejuni strains isolated from a waterborne outbreak
Q64115725	Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment
Q61804754	Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256
Q50101648	Genome analysis of clinical multilocus sequence Type 11 Klebsiella pneumoniae from China.
Q100954881	Genome analysis reveals probiotic prop-ensities of Paenibacillus polymyxa HK4
Q64071792	Genome and Environmental Activity of a Virus and Its Virophages
Q36224870	Genome and Proteome Analysis of Rhodococcus erythropolis MI2: Elucidation of the 4,4´-Dithiodibutyric Acid Catabolism.
Q99207576	Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia
Q40099512	Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains.
Q41717319	Genome characterization of two bile-isolated Vibrio fluvialis strains: an insight into pathogenicity and bile salt adaption
Q92373705	Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts
Q52431854	Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution.
Q30936309	Genome comparison provides molecular insights into the phylogeny of the reassigned new genus Lysinibacillus
Q40178164	Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones
Q35652071	Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology
Q42205591	Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host-virus coevolution
Q59340013	Genome sequence analysis of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain depicts evidence of increase genome plasticity
Q49490122	Genome sequence and comparative genomic analysis of a clinically important strain CD11-4 of Janibacter melonis isolated from celiac disease patient.
Q34514532	Genome sequence of Candidatus Riesia pediculischaeffi, endosymbiont of chimpanzee lice, and genomic comparison of recently acquired endosymbionts from human and chimpanzee lice
Q33774403	Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
Q31067959	Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment
Q55658126	Genome sequence of a multidrug-resistant Corynebacterium striatum isolated from bloodstream infection from a nosocomial outbreak in Rio de Janeiro, Brazil.
Q33906307	Genome sequences characterizing five mutations in RNA polymerase and major capsid of phages ϕA318 and ϕAs51 of Vibrio alginolyticus with different burst efficiencies
Q57455948	Genome sequencing and assessment of plant growth-promoting properties of a Serratia marcescens strain isolated from vermicompost
Q38613794	Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization
Q36757171	Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart
Q90005514	Genome sequencing of Burkholderia contaminans LTEB11 reveals a lipolytic arsenal of biotechnological interest
Q36129180	Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans
Q27350175	Genome stability of Propionibacterium acnes: a comprehensive study of indels and homopolymeric tracts
Q98224659	Genome-Guided Mass Spectrometry Expedited the Discovery of Paraplantaricin TC318, a Lantibiotic Produced by Lactobacillus paraplantarum Strain Isolated From Cheese
Q33736594	Genome-Wide Analyses Reveal Genes Subject to Positive Selection in Pasteurella multocida
Q58107252	Genome-informed diagnostics for specific and rapid detection of Pectobacterium species using recombinase polymerase amplification coupled with a lateral flow device
Q35035783	GenomeFingerprinter: the genome fingerprint and the universal genome fingerprint analysis for systematic comparative genomics
Q42129821	GenomeRing: alignment visualization based on SuperGenome coordinates
Q37172465	Genomic Analysis Reveals Multi-Drug Resistance Clusters in Group B Streptococcus CC17 Hypervirulent Isolates Causing Neonatal Invasive Disease in Southern Mainland China
Q37296968	Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains
Q30401029	Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Sequence Type 95 Strains
Q50041526	Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 genome.
Q36950832	Genomic Characterization of a Pattern D Streptococcus pyogenes emm53 Isolate Reveals a Genetic Rationale for Invasive Skin Tropicity
Q97886014	Genomic Characterization of mcr-1-carrying Salmonella enterica Serovar 4,[5],12:i:- ST 34 Clone Isolated From Pigs in China
Q44049744	Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1.
Q90454645	Genomic Comparison of Highly Virulent, Moderately Virulent, and Avirulent Strains From a Genetically Closely-Related MRSA ST239 Sub-lineage Provides Insights Into Pathogenesis
Q35759181	Genomic Comparison of Translocating and Non-Translocating Escherichia coli.
Q33428897	Genomic Comparison of Two O111:H- Enterohemorrhagic Escherichia coli Isolates from a Historic Hemolytic-Uremic Syndrome Outbreak in Australia
Q91810394	Genomic Diversity of Common Sequence Types of Listeria monocytogenes Isolated from Ready-to-Eat Products of Animal Origin in South Africa
Q90176653	Genomic Epidemiology of Carbapenem- and Colistin-Resistant Klebsiella pneumoniae Isolates From Serbia: Predominance of ST101 Strains Carrying a Novel OXA-48 Plasmid
Q40064795	Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.
Q36691724	Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid
Q37290710	Genomic Recombination Leading to Decreased Virulence of Group B Streptococcus in a Mouse Model of Adult Invasive Disease
Q40810212	Genomic Resolution of Outbreak-Associated Legionella pneumophila Serogroup 1 Isolates from New York State.
Q37626789	Genomic analyses of multidrug resistant Pseudomonas aeruginosa PA1 resequenced by single-molecule real-time sequencing.
Q61800931	Genomic analyses of two Alteromonas stellipolaris strains reveal traits with potential biotechnological applications
Q64066371	Genomic analysis of Leptospira interrogans serovar Paidjan and Dadas isolates from carrier dogs and comparative genomic analysis to detect genes under positive selection
Q92149003	Genomic analysis of carbapenemase-producing Enterobacteriaceae in Queensland reveals widespread transmission of bla IMP-4 on an IncHI2 plasmid
Q35915195	Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA.
Q41466638	Genomic analysis of methanogenic archaea reveals a shift towards energy conservation
Q92458442	Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648
Q36352901	Genomic and Functional Characterization of qnr-Encoding Plasmids from Municipal Wastewater Biosolid Klebsiella pneumoniae Isolates.
Q30376979	Genomic and Functional Portrait of a Highly Virulent, CTX-M-15-Producing H30-Rx Subclone of Escherichia coli Sequence Type 131.
Q98465555	Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia
Q60949763	Genomic and Transcriptomic Characterization of the Candidate Phylum NPL-UPL2 From Highly Alkaline Highly Reducing Serpentinized Groundwater
Q36254274	Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection.
Q36100022	Genomic and transcriptomic insights into the efficient entomopathogenicity of Bacillus thuringiensis
Q30316854	Genomic avenue to avian colisepticemia
Q55453245	Genomic characterisation of Leptospira inadai serogroup Lyme isolated from captured rat in Brazil and comparative analysis with human reference strain.
Q46251948	Genomic characterization and comparative analysis of L. interrogans serogroup Australis isolated from swine
Q94460466	Genomic characterization of Lactobacillus fermentum DSM 20052
Q58778822	Genomic characterization of NDM-1 and 5, and OXA-181 carbapenemases in uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia
Q47126685	Genomic characterization of a new endophytic Streptomyces kebangsaanensis identifies biosynthetic pathway gene clusters for novel phenazine antibiotic production.
Q61782832	Genomic characterization of coagulase-negative staphylococci including methicillin-resistant Staphylococcus sciuri causing bovine mastitis
Q89889605	Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018
Q34649132	Genomic comparison between Salmonella Gallinarum and Pullorum: differential pseudogene formation under common host restriction
Q51782883	Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012.
Q34334734	Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus
Q37529405	Genomic evolution of 11 type strains within family Planctomycetaceae
Q42763430	Genomic features of uncultured methylotrophs in activated-sludge microbiomes grown under different enrichment procedures
Q97551094	Genomic insights into evolution of extensive drug resistance in Stenotrophomonas maltophilia complex
Q34261168	Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives
Q57067326	Genomic insights of Vibrio harveyi RT-6 strain, from infected "Whiteleg shrimp" (Litopenaeus vannamei) using Illumina Platform
Q36463191	Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis
Q39879069	Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa.
Q89447399	Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh
Q37352759	Genomic, physiologic, and proteomic insights into metabolic versatility in Roseobacter clade bacteria isolated from deep-sea water
Q90598746	Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts
Q37739134	Genomics Reveals a Unique Clone of Burkholderia cenocepacia Harboring an Actively Excising Novel Genomic Island.
Q110693605	Genomics and simulated laboratory studies reveal Thermococcus sp. 101C5 as a novel hyperthermophilic archaeon possessing a specialized metabolic arsenal for enhanced oil recovery
Q47659212	Genomics of Corynebacterium striatum, an emerging multi-drug resistant pathogen of immunocompromised patients
Q30278439	Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains
Q54978864	Genus-wide comparison of Pseudovibrio bacterial genomes reveal diverse adaptations to different marine invertebrate hosts.
Q39629429	Geographic Impact on Genomic Divergence as Revealed by Comparison of Nine Citromicrobial Genomes
Q48096821	Geographically widespread honeybee-gut symbiont subgroups show locally distinct antibiotic-resistant patterns.
Q90680985	Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Membe
Q37711903	Global dissemination of a multidrug resistant Escherichia coli clone
Q38677419	Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study
Q46263582	Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction
Q28546232	Haemophilus ducreyi Cutaneous Ulcer Strains Are Nearly Identical to Class I Genital Ulcer Strains
Q111741795	Halomonas antri sp. nov., a carotenoid-producing bacterium isolated from surface seawater
Q47119812	Heat Resistance Mediated by pLM58 Plasmid-Borne ClpL in Listeria monocytogenes
Q52659747	Heavy Metal Susceptibility of Escherichia coli Isolated from Urine Samples from Sweden, Germany, and Spain.
Q36434486	High Incidence of Invasive Group A Streptococcus Disease Caused by Strains of Uncommon emm Types in Thunder Bay, Ontario, Canada
Q90051224	High Prevalence of Colistin-Resistant Escherichia coli with Chromosomally Carried mcr-1 in Healthy Residents in Vietnam
Q37413795	High Prevalence of ESBL-Producing Klebsiella pneumoniae Causing Community-Onset Infections in China.
Q50044317	High genetic plasticity in multidrug resistant ST3-IncHI2 plasmids revealed by sequence comparison and phylogenetic analysis.
Q47390209	High prevalence and genetic diversity of large phiCD211/phiCDIF1296T-like prophages in Clostridioides difficile.
Q93039685	High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
Q35707670	High quality draft genome of Lactobacillus kunkeei EFB6, isolated from a German European foulbrood outbreak of honeybees
Q28829349	High quality draft genome sequence of the type strain of Pseudomonas lutea OK2(T), a phosphate-solubilizing rhizospheric bacterium
Q42574937	High-density transcriptional initiation signals underline genomic islands in bacteria
Q33913033	High-quality draft genome sequence of a biofilm forming lignocellulolytic Aspergillus niger strain ATCC 10864.
Q36274211	High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1.
Q99608511	Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114
Q38638822	HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
Q97568237	Horizontal Plasmid Transfer among Klebsiella pneumoniae Isolates Is the Key Factor for Dissemination of Extended-Spectrum β-Lactamases among Children in Tanzania
Q56989521	Horizontal Transfer of Symbiosis Genes within and Between Rhizobial Genera: Occurrence and Importance
Q63762111	Host Resistance, Genomics and Population Dynamics in a Enteritidis and Phage System
Q96229870	Host dependent maintenance of a blaNDM-1-encoding plasmid in clinical Escherichia coli isolates
Q39479009	How Clonal Is Clonal? Genome Plasticity across Multicellular Segments of a "Candidatus Marithrix sp." Filament from Sulfidic, Briny Seafloor Sediments in the Gulf of Mexico.
Q33613505	How to Name and Classify Your Phage: An Informal Guide
Q89537771	Hybrid Genome Assembly and Annotation of a Pandrug-Resistant Klebsiella pneumoniae Strain Using Nanopore and Illumina Sequencing
Q42406939	Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid
Q89544317	ICTV Virus Taxonomy Profile: Herelleviridae
Q93181565	Identification and characterization of OmpT-like proteases in uropathogenic Escherichia coli clinical isolates
Q64273359	Identification and first characterization of DinJ-YafQ toxin-antitoxin systems in Lactobacillus species of biotechnological interest
Q35688704	Identification of a gene in Mycoplasma hominis associated with preterm birth and microbial burden in intraamniotic infection
Q35826975	Identification of a highly transmissible animal-independent Staphylococcus aureus ST398 clone with distinct genomic and cell adhesion properties
Q47567273	Identification of a novel genomic island associated with vanD-type vancomycin-resistance in six Dutch vancomycin-resistant Enterococcus faecium.
Q49939378	Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B.
Q37712894	Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae
Q33813094	Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library
Q64109910	Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data
Q35876501	Implications of Genome-Based Discrimination between Clostridium botulinum Group I and Clostridium sporogenes Strains for Bacterial Taxonomy
Q61797586	Improved genome of type strain provides new taxonomic insight into genomospecies 4
Q47371666	In Silico and Experimental Data Claiming Safety Aspects and Beneficial Attributes of the Bacteriocinogenic Strain Enterococcus faecalis B3A-B3B.
Q49923903	In vivo transfer and microevolution of avian native IncA/C2blaNDM-1-carrying plasmid pRH-1238 during a broiler chicken infection study.
Q55330700	Infection by a Giant Virus (AaV) Induces Widespread Physiological Reprogramming in Aureococcus anophagefferens CCMP1984 - A Harmful Bloom Algae.
Q90176984	Initial Characterization of the Chloroplast Genome of Vicia sepium, an Important Wild Resource Plant, and Related Inferences About Its Evolution
Q58572981	Insight Into Metabolic Versatility of an Aromatic Compounds-Degrading sp. YC-RL1
Q39093572	Insight into the Genome of Brochothrix thermosphacta, a Problematic Meat Spoilage Bacterium.
Q28477685	Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms
Q46843568	Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies
Q54965316	Insights into the Genome Sequence of Chromobacterium amazonense Isolated from a Tropical Freshwater Lake.
Q49914319	Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea.
Q60956670	Insights on Efflux Pumps and Their Implications in Drug Resistance and Virulence
Q41920388	Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes
Q92932126	Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei
Q96126655	Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines
Q30839277	Interaction of Cutibacterium ( formerly Propionibacterium) acnes with bone cells: a step toward understanding bone and joint infection development
Q92354571	Intercellular Transfer of Chromosomal Antimicrobial Resistance Genes between Acinetobacter baumannii Strains Mediated by Prophages
Q36174068	Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing.
Q64102395	Isolated From Blood Cultures and Prosthetic Joint Infections Exhibits Excessive Genome Decay
Q64107974	Isolation and Bacteriocin-Related Typing of
Q36173449	Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains
Q90448382	Janibacter species with evidence of genomic polymorphism isolated from resected heart valve in a patient with aortic stenosis
Q58761353	Joint Genomic and Proteomic Analysis Identifies Meta-Trait Characteristics of Virulent and Non-virulent Staphylococcus aureus Strains.
Q51144968	KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.
Q37592702	Key Impact of an Uncommon Plasmid on Bacillus amyloliquefaciens subsp. plantarum S499 Developmental Traits and Lipopeptide Production.
Q89620820	Key Transitions in the Evolution of Rapid and Slow Growing Mycobacteria Identified by Comparative Genomics
Q55239768	Kinome Expansion in the Fusarium oxysporum Species Complex Driven by Accessory Chromosomes.
Q35368576	Lactobacillus ruminis strains cluster according to their mammalian gut source.
Q50542023	Large-Scale Sequence Comparison.
Q42650291	Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015
Q37239405	Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios
Q34569191	Leptospiral pathogenomics
Q35676300	Lifestyle evolution in cyanobacterial symbionts of sponges
Q52816108	Long-term Colonization by Campylobacter jejuni Within a Human Host: Evolution, Antimicrobial Resistance, and Adaptation
Q92823756	Loss of mcr Genes Mediated by Plasmid Elimination and ISApl1
Q90129034	Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients
Q30854061	Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi
Q95329050	Lysogenic host-virus interactions in SAR11 marine bacteria
Q40203754	Major role of pKpQIL-like plasmids in the early dissemination of KPC-type carbapenemases in the UK.
Q55078983	Mansonella ozzardi mitogenome and pseudogene characterisation provides new perspectives on filarial parasite systematics and CO-1 barcoding.
Q35883755	Mapping the Evolution of Hypervirulent Klebsiella pneumoniae
Q30848200	Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.
Q35455896	Matrix-assisted laser desorption ionization-time of flight and comparative genomic analysis of M-18 group a Streptococcus strains associated with an acute rheumatic fever outbreak in northeast Italy in 2012 and 2013.
Q35164556	MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics
Q90639345	Metadata Analysis of mcr-1-Bearing Plasmids Inspired by the Sequencing Evidence for Horizontal Transfer of Antibiotic Resistance Genes Between Polluted River and Wild Birds
Q47165806	Metagenomic Analysis of Therapeutic PYO Phage Cocktails from 1997 to 2014.
Q35844684	Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities
Q38613060	Microbial taxonomy in the era of OMICS: application of DNA sequences, computational tools and techniques.
Q57171494	Microevolution of Streptococcus agalactiae ST-261 from Australia Indicates Dissemination via Imported Tilapia and Ongoing Adaptation to Marine Hosts or Environment
Q64983502	Microevolution of antimicrobial resistance and biofilm formation of Salmonella Typhimurium during persistence on pig farms.
Q47138783	MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage
Q54941365	Mind the gap! The mitochondrial control region and its power as a phylogenetic marker in echinoids.
Q35730750	Mitochondrial Genome Supports Sibling Species of Angiostrongylus costaricensis (Nematoda: Angiostrongylidae)
Q39183351	Mitochondrial genome of Turbinaria ornata (Sargassaceae, Phaeophyceae): comparative mitogenomics of brown algae
Q28822019	Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae
Q34512535	Mobile CRISPR/Cas-mediated bacteriophage resistance in Lactococcus lactis
Q61444722	Molecular Characterization of Carbapenem Resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae Isolated from Lebanon
Q36189420	Molecular Keys to the Janthinobacterium and Duganella spp. Interaction with the Plant Pathogen Fusarium graminearum
Q35439695	Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition
Q33874180	Molecular characteristics of mcr-1-carrying plasmids and new mcr-1 variant recovered from polyclonal clinical Escherichia coli from Argentina and Canada
Q50134098	Molecular characterization of IMP-1-producing Enterobacter cloacae complex isolates in Tokyo.
Q35602248	Molecular characterization of a multidrug resistance IncF plasmid from the globally disseminated Escherichia coli ST131 clone
Q92590150	Molecular characterization of blaKHM-1 encoding plasmid in an Enterobacter hormaechei subsp. hoffmannii isolate from blood culture
Q34017580	Molecular characterization of the 2011 Hong Kong scarlet fever outbreak
Q97094124	Molecular evolutionary and 3D protein structural analyses of Lactobacillus fermentum elongation factor Tu, a novel brain health promoting factor
Q59335933	Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains
Q63761813	Multidrug resistance and multivirulence plasmids in enterotoxigenic and hybrid Shiga toxin-producing/enterotoxigenic Escherichia coli isolated from diarrheic pigs in Switzerland
Q36349644	Multidrug-resistant bacteria compensate for the epistasis between resistances.
Q37330230	Multilevel selection of bcrABDR-mediated bacitracin resistance in Enterococcus faecalis from chicken farms
Q36568791	Multiple ESBL-Producing Escherichia coli Sequence Types Carrying Quinolone and Aminoglycoside Resistance Genes Circulating in Companion and Domestic Farm Animals in Mwanza, Tanzania, Harbor Commonly Occurring Plasmids
Q64097924	Multiple Recombination Events Drive the Current Genetic Structure of in Florida
Q58769457	Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic CIRM-BIA 129
Q42372931	Nanopore Long-Read Guided Complete Genome Assembly of Hydrogenophaga intermedia, and Genomic Insights into 4-Aminobenzenesulfonate, p-Aminobenzoic Acid and Hydrogen Metabolism in the Genus Hydrogenophaga.
Q99711477	Nanopore MinION Sequencing Reveals Possible Transfer of bla KPC-2 Plasmid Across Bacterial Species in Two Healthcare Facilities
Q93001172	Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection
Q33715837	Nationwide Surveillance of Clinical Carbapenem-resistant Enterobacteriaceae (CRE) Strains in China
Q36913937	New Insights into the Genetic Diversity of Clostridium botulinum Group III through Extensive Genome Exploration
Q91235977	New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies
Q35775394	Next generation genome sequencing reveals phylogenetic clades with different level of virulence among Salmonella Typhimurium clinical human isolates in Hong Kong
Q34941781	Next generation sequencing analysis of nine Corynebacterium ulcerans isolates reveals zoonotic transmission and a novel putative diphtheria toxin-encoding pathogenicity island
Q41415884	Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa
Q52591144	Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family.
Q42267398	Non-autotrophic methanogens dominate in anaerobic digesters.
Q39132646	Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica.
Q64096202	Nosocomial bloodstream infection and the emerging carbapenem-resistant pathogen Ralstonia insidiosa
Q92613713	Novel Carbapenemases FLC-1 and IMI-2 Encoded by an Enterobacter cloacae Complex Isolated from Food Products
Q41244853	Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison
Q40120279	Novel Fri1-like Viruses Infecting Acinetobacter baumannii-vB_AbaP_AS11 and vB_AbaP_AS12-Characterization, Comparative Genomic Analysis, and Host-Recognition Strategy.
Q35819786	Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.
Q33843852	Novel Plasmid-Mediated Colistin Resistance Gene mcr-3 in Escherichia coli
Q34284507	Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis.
Q64114148	OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs
Q36229880	Occurrence and characterization of mcr-1-harbouring Escherichia coli isolated from pigs in Great Britain from 2013 to 2015.
Q64109392	Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1
Q90050050	Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology
Q41071511	Origin-of-transfer sequences facilitate mobilisation of non-conjugative antimicrobial-resistance plasmids in Staphylococcus aureus
Q48309660	Overexpression of a newly identified d-amino acid transaminase in Mycobacterium smegmatis complements glutamate racemase deletion
Q90289546	Overview of Genomic Tools for Circular Visualization in the Next-generation Genomic Sequencing Era
Q110693632	Paenibacillus piscarius sp. nov., a novel nitrogen-fixing species isolated from the gut of the armored catfish Parotocinclus maculicauda
Q33559212	Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors.
Q50203139	Pan-Genomic Approaches in Lactobacillus reuteri as a Porcine Probiotic: Investigation of Host Adaptation and Antipathogenic Activity.
Q40716101	Pan-genome analysis of Aeromonas hydrophila, Aeromonas veronii and Aeromonas caviae indicates phylogenomic diversity and greater pathogenic potential for Aeromonas hydrophila
Q47739680	Pan-genome analysis of the genus Finegoldia identifies two distinct clades, strain-specific heterogeneity, and putative virulence factors.
Q50328593	Pantoea ananatis Genetic Diversity Analysis Reveals Limited Genomic Diversity as Well as Accessory Genes Correlated with Onion Pathogenicity.
Q36197313	Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection
Q57055378	Pathogenicity, Phylogenetic relationship and NGS based identification and assembly of tumorigenic Agrobacterium radiabacter plasmidic and chromosomic reads isolated from Prunus duclcis
Q94464356	Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes
Q28660564	Pathogens and host immunity in the ancient human oral cavity
Q89889574	Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence
Q36870098	Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions
Q37199669	Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria.
Q35385287	Persistence and epidemic propagation of a Pseudomonas aeruginosa sequence type 235 clone harboring an IS26 composite transposon carrying the blaIMP-1 integron in Hiroshima, Japan, 2005 to 2012
Q60949673	PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes
Q40370840	Phagebiotics in treatment and prophylaxis of healthcare-associated infections.
Q33901126	Phenotypic and genomic comparison of Mycobacterium aurum and surrogate model species to Mycobacterium tuberculosis: implications for drug discovery
Q90461721	Phylogenetic Grouping of Human Ocular Escherichia coli Based on Whole-Genome Sequence Analysis
Q34228313	Phylogenetic incongruence in E. coli O104: understanding the evolutionary relationships of emerging pathogens in the face of homologous recombination
Q36891205	Phylogenomic Analysis Reveals an Asian Origin for African Burkholderia pseudomallei and Further Supports Melioidosis Endemicity in Africa
Q55084151	Phylogenomic Based Comparative Studies on Indian and American Commensal Staphylococcus epidermidis Isolates.
Q30824735	Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site
Q37632981	Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
Q34732534	Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.
Q64229166	Plasmid-Mediated Transmission of KPC-2 Carbapenemase in in Critically Ill Patients
Q115666055	Plasmids conferring resistance to extended-spectrum beta-lactamases including a rare IncN+IncR multireplicon carrying blaCTX-M-1 in Escherichia coli recovered from migrating barnacle geese (Branta leucopsis)
Q45746566	Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers
Q42237117	Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes
Q35949469	Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains
Q92602528	Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection
Q35229670	Population structure and antimicrobial resistance of invasive serotype IV group B Streptococcus, Toronto, Ontario, Canada
Q37607188	Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors
Q41125648	Post-hypoxia Invasion of the fetal brain by multidrug resistant Staphylococcus
Q37618438	Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872.
Q37459193	Predominance of CTX-M-15 among ESBL Producers from Environment and Fish Gut from the Shores of Lake Victoria in Mwanza, Tanzania
Q104469136	Prevalence and antimicrobial susceptibility of Clostridium perfringens in chickens and pigs from Beijing and Shanxi, China
Q47141018	Prevalence of Flp Pili-Encoding Plasmids in Cutibacterium acnes Isolates Obtained from Prostatic Tissue
Q37612983	Prevalence of mcr-1 in the Cecal Contents of Food Animals in the United States
Q33757250	Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
Q47377611	Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.
Q92907201	Prophages contribute to genome plasticity of Klebsiella pneumoniae and may involve the chromosomal integration of ARGs in CG258
Q36063922	Propionibacterium avidum as an Etiological Agent of Prosthetic Hip Joint Infection
Q49460790	Prospective study on human fecal carriage of Enterobacteriaceae possessing mcr-1 and mcr-2 genes in a regional hospital in Hong Kong.
Q64087594	Proteomic Analysis of in the Presence of Isolated From Water Kefir and Comparison With
Q40412706	Protracted Regional Dissemination of GIM-1-Producing Serratia marcescens in Western Germany
Q38818065	Pseudomonas aeruginosa adaptation and diversification in the non-cystic fibrosis bronchiectasis lung.
Q34525104	Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity
Q37514141	Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation
Q43102889	Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
Q64964854	Putative vaccine candidates and drug targets identified by reverse vaccinology and subtractive genomics approaches to control Haemophilus ducreyi, the causative agent of chancroid.
Q35918553	Quorum sensing activity of Citrobacter amalonaticus L8A, a bacterium isolated from dental plaque
Q36382284	Rampant Parasexuality Evolves in a Hospital Pathogen during Antibiotic Selection.
Q90636572	Rapid Emergence of a Pandrug-Resistant Klebsiella pneumoniae ST11 Isolate in an Inpatient in a Teaching Hospital in China After Treatment with Multiple Broad-Spectrum Antibiotics
Q92025926	Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens
Q64083071	Rapid genetic and phenotypic changes in Pseudomonas aeruginosa clinical strains during ventilator-associated pneumonia
Q59136818	Rapidly evolving changes and gene loss associated with host switching in Corynebacterium pseudotuberculosis
Q91199119	Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes
Q42243314	Recently published Streptomyces genome sequences
Q42372797	Reclassification of Paenibacillus riograndensis as a Genomovar of Paenibacillus sonchi: Genome-Based Metrics Improve Bacterial Taxonomic Classification
Q34906024	Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection
Q40065742	Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.
Q63647666	Resistance mechanisms and population structure of highly drug resistant Klebsiella in Pakistan during the introduction of the carbapenemase NDM-1
Q35918832	Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.
Q52595196	Retrospective Analysis of Bacterial Cultures Sampled in German Chicken-Fattening Farms During the Years 2011-2012 Revealed Additional VIM-1 Carbapenemase-Producing Escherichia coli and a Serologically Rough Salmonella enterica Serovar Infantis.
Q41170579	Retrospective identification of a previously undetected clinical case of OXA-48-producing K. pneumoniae and E. coli: the importance of adequate detection guidelines
Q92652148	Reverse vaccinology and subtractive genomics reveal new therapeutic targets against Mycoplasma pneumoniae: a causative agent of pneumonia
Q35793594	Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot.
Q92446773	Riding the wave of genomics to investigate aquatic coliphage diversity and activity
Q47158081	Risk of Transmission of Antimicrobial Resistant Escherichia coli from Commercial Broiler and Free-Range Retail Chicken in India
Q116816864	Sandaracinobacteroides saxicola sp. nov., a Zeaxanthin-Producing and Halo-Sensitive Bacterium Isolated from Fully Weathered Granitic Soil, and the Diversity of Its ARHDs
Q35644798	Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes
Q38794756	Serotype Distribution, Population Structure, and Antimicrobial Resistance of Group B Streptococcus Strains Recovered from Colonized Pregnant Women
Q41629945	Serotype IV Sequence Type 468 Group B Streptococcus Neonatal Invasive Disease, Minnesota, USA.
Q37093287	Serotype IV Streptococcus agalactiae ST-452 has arisen from large genomic recombination events between CC23 and the hypervirulent CC17 lineages.
Q91604156	Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013
Q90431920	Shedding of OXA-181 carbapenemase-producing Escherichia coli from companion animals after hospitalisation in Switzerland: an outbreak in 2018
Q90458378	Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
Q37658221	Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two food-borne outbreaks.
Q37627832	Shrimp AHPND-causing plasmids encoding the PirAB toxins as mediated by pirAB-Tn903 are prevalent in various Vibrio species
Q51122864	Single nucleotide polymorphisms may explain the contrasting phenotypes of two variants of a multidrug-resistant Mycobacterium tuberculosis strain.
Q30650682	Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus
Q36573697	Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates
Q41925990	Sorbitol-Fermenting Enterohemorrhagic Escherichia coli O157:H- Isolates from Czech Patients with Novel Plasmid Composition Not Previously Seen in German Isolates
Q31007879	Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll
Q116816762	Species classification and novel plasmid identifications in Arcobacter cryaerophilus and Arcobacter cryaerophilus-like organisms
Q45199265	Specific blaCTX-M-8/IncI1 Plasmid Transfer among Genetically Diverse Escherichia coli Isolates between Humans and Chickens
Q48264427	Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.
Q52366737	Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa.
Q90681014	Staphylococcus aureus ST398 Virulence Is Associated With Factors Carried on Prophage ϕSa3
Q41655241	Staphylococcus aureus plasmids without mobilization genes are mobilized by a novel conjugative plasmid from community isolates.
Q92170120	Stenotrophomonas maltophilia Differential Gene Expression in Synthetic Cystic Fibrosis Sputum Reveals Shared and Cystic Fibrosis Strain-Specific Responses to the Sputum Environment
Q92110453	Strain-Specific Anti-inflammatory Properties of Two Akkermansia muciniphila Strains on Chronic Colitis in Mice
Q90370650	Strain-dependent inhibition of Clostridioides difficile by commensal Clostridia encoding the bile acid inducible (bai) operon
Q33729992	Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus
Q118110050	Streptomonospora mangrovi sp. nov., isolated from mangrove soil showing similar metabolic capabilities, but distinct secondary metabolites profiles
Q41007693	Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
Q34993189	SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics
Q33553795	Synergistic Interaction Between Phage Therapy and Antibiotics Clears Pseudomonas Aeruginosa Infection in Endocarditis and Reduces Virulence
Q40262992	Target-Specific Assay for Rapid and Quantitative Detection of Mycobacterium chimaera DNA.
Q91711766	Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak
Q39200567	The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis
Q41676477	The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli
Q90223851	The Effect of 2-Thiocyanatopyridine Derivative 11026103 on Burkholderia Cenocepacia: Resistance Mechanisms and Systemic Impact
Q41788790	The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides.
Q35973904	The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
Q34584084	The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases
Q49247849	The Novel Phages phiCD5763 and phiCD2955 Represent Two Groups of Big Plasmidial Siphoviridae Phages of Clostridium difficile.
Q58556347	The Occurence of Colistin-Resistant Hypervirulent in China
Q49320136	The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.
Q42680699	The Prochlorococcus carbon dioxide-concentrating mechanism: evidence of carboxysome-associated heterogeneity
Q41658949	The Siderophore Product Ornibactin Is Required for the Bactericidal Activity of Burkholderia contaminans MS14
Q41950562	The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
Q92169999	The bla NDM-1-Carrying IncA/C2 Plasmid Underlies Structural Alterations and Cointegrate Formation In Vivo
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review article	Q7318358
scholarly article	Q13442814

P6179	Dimensions Publication ID	1028853462
P356	DOI	10.1186/1471-2164-12-402
P2888	exact match	https://scigraph.springernature.com/pub.10.1186/1471-2164-12-402
P932	PMC publication ID	3163573
P698	PubMed publication ID	21824423
P5875	ResearchGate publication ID	51554831

P50	author	Nicola K. Petty	Q30349066
		Scott A. Beatson	Q30506176
		Nabil-Fareed Alikhan	Q55544918
		Nouri L Ben Zakour	Q58149804
P2860	cites work	Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T	Q22065494
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		Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.	Q41823804
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		Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.	Q42645426
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P4510	describes a project that uses	MUMmer	Q6719063
P407	language of work or name	English	Q1860
P304	page(s)	402
P577	publication date	2011-08-08
P1433	published in	BMC Genomics	Q15765854
P1476	title	BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
P478	volume	12

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

scientific article

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