| scholarly article | Q13442814 |
| P50 | author | Vivek Dwivedi | Q87120203 |
| Joshua J Hamilton | Q41046331 | ||
| Jennifer L. Reed | Q61446134 | ||
| P2860 | cites work | An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) | Q21194867 |
| Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection | Q22122301 | ||
| Escherichia coli mutants deficient in the aspartate and aromatic amino acid aminotransferases | Q24655149 | ||
| Hydrophobicity and charge shape cellular metabolite concentrations | Q26864217 | ||
| Multicopy suppression underpins metabolic evolvability | Q28249970 | ||
| What is flux balance analysis? | Q28275348 | ||
| Chemical Basis of Metabolic Network Organization | Q28477485 | ||
| Identification of Functional Differences in Metabolic Networks Using Comparative Genomics and Constraint-Based Models | Q28483888 | ||
| Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data | Q28766251 | ||
| Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution | Q81564298 | ||
| Applications of genome-scale metabolic reconstructions | Q29031028 | ||
| Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli | Q29615316 | ||
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information | Q29615371 | ||
| The effects of alternate optimal solutions in constraint-based genome-scale metabolic models | Q29616019 | ||
| Culture medium for enterobacteria | Q29616466 | ||
| Systematic assignment of thermodynamic constraints in metabolic network models | Q33264473 | ||
| Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks | Q33286434 | ||
| OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains | Q33567324 | ||
| Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coli | Q33574191 | ||
| Thermodynamic analysis of biodegradation pathways | Q33816115 | ||
| Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals | Q34028097 | ||
| Energy balance for analysis of complex metabolic networks | Q34178210 | ||
| Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods | Q34257056 | ||
| An integrated open framework for thermodynamics of reactions that combines accuracy and coverage. | Q34285690 | ||
| Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry | Q34321033 | ||
| Elimination of thermodynamically infeasible loops in steady-state metabolic models | Q34536141 | ||
| Multiple high-throughput analyses monitor the response of E. coli to perturbations | Q34578020 | ||
| Stoichiometric network theory for nonequilibrium biochemical systems | Q35050976 | ||
| Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction. | Q35895080 | ||
| Group contribution method for thermodynamic analysis of complex metabolic networks | Q36783787 | ||
| Ornithine delta-transaminase activity in Escherichia coli: its identity with acetylornithine delta-transaminase | Q39108353 | ||
| Isolation and characterization of acetylornithine δ-transaminase of wild-type Escherichia coli W. Comparison with arginine-inducible acetylornithine δ-transaminase | Q39681304 | ||
| Thermodynamic analysis of regulation in metabolic networks using constraint-based modeling | Q40648189 | ||
| Experimental and computational assessment of conditionally essential genes in Escherichia coli | Q41063583 | ||
| Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective | Q41724911 | ||
| Thermodynamics-based metabolic flux analysis | Q41874839 | ||
| Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli | Q42120436 | ||
| Genome-scale thermodynamic analysis of Escherichia coli metabolism | Q42155867 | ||
| Estimation of standard Gibbs energy changes of biotransformations | Q42163343 | ||
| Genome-scale gene/reaction essentiality and synthetic lethality analysis | Q42287542 | ||
| Update on the Keio collection of Escherichia coli single-gene deletion mutants | Q42912234 | ||
| Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout | Q44579709 | ||
| Thermodynamic-based computational profiling of cellular regulatory control in hepatocyte metabolism | Q45126764 | ||
| Thermodynamic constraints for biochemical networks | Q51676908 | ||
| Combining flux and energy balance analysis to model large-scale biochemical networks. | Q51924640 | ||
| Identification of localized and distributed bottlenecks in metabolic pathways | Q52407731 | ||
| Acquisition of new metabolic capabilities: multicopy suppression by cloned transaminase genes in Escherichia coli K-12. | Q54748254 | ||
| Ab initio prediction of thermodynamically feasible reaction directions from biochemical network stoichiometry | Q81157263 | ||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 11 | |
| P304 | page(s) | 512-522 | |
| P577 | publication date | 2013-07-01 | |
| 2013-07-16 | |||
| P1433 | published in | Biophysical Journal | Q2032955 |
| P1476 | title | Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models | |
| Quantitative Assessment of Thermodynamic Constraints on the Solution Space of Genome-Scale Metabolic Models | |||
| P478 | volume | 105 |
| Q38775834 | Application of theoretical methods to increase succinate production in engineered strains. |
| Q89980566 | LK-DFBA: a linear programming-based modeling strategy for capturing dynamics and metabolite-dependent regulation in metabolism |
| Q90093259 | Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies |
| Q38904186 | Logical transformation of genome-scale metabolic models for gene level applications and analysis. |
| Q41859031 | MapMaker and PathTracer for tracking carbon in genome-scale metabolic models. |
| Q51533799 | Metabolic assessment of E. coli as a Biofactory for commercial products. |
| Q38292789 | Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation |
| Q35574156 | Metabolomics integrated elementary flux mode analysis in large metabolic networks. |
| Q42230023 | Network thermodynamic curation of human and yeast genome-scale metabolic models. |
| Q35609075 | Predicting internal cell fluxes at sub-optimal growth |
| Q35285535 | Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function |
| Q89011264 | Temperature-Dependent Estimation of Gibbs Energies Using an Updated Group-Contribution Method |
| Q41490801 | Theoretical Studies of Intracellular Concentration of Micro-organisms' Metabolites. |
| Q38632109 | Thermodynamic Constraints Improve Metabolic Networks |
| Q35683444 | Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community |
| Q28539829 | Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses |
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