| scholarly article | Q13442814 |
| P2093 | author name string | T J Barrett | |
| R V Tauxe | |||
| B Swaminathan | |||
| S B Hunter | |||
| CDC PulseNet Task Force | |||
| P2860 | cites work | Molecular epidemiology of bacterial infections: examples of methodology and of investigations of outbreaks | Q30403413 |
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| P433 | issue | 3 | |
| P921 | main subject | United States of America | Q30 |
| disease surveillance | Q3555250 | ||
| P304 | page(s) | 382-389 | |
| P577 | publication date | 2001-05-01 | |
| P1433 | published in | Emerging Infectious Diseases | Q5235761 |
| P1476 | title | PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, United States | |
| P478 | volume | 7 |
| Q56774134 | Q56774134 |
| Q37059095 | 'Surprise': Outbreak of Campylobacter infection associated with chicken liver pâté at a surprise birthday party, Adelaide, Australia, 2012 |
| Q57230952 | A Large, Multiple-Restaurant Outbreak of Infection with Shigella flexneri Serotype 2a Traced to Tomatoes |
| Q35694876 | A Large-Scale Community-Based Outbreak of Paratyphoid Fever Caused by Hospital-Derived Transmission in Southern China |
| Q50045155 | A Prolonged Outbreak of Salmonella Montevideo Infections Associated with Multiple Locations of a Restaurant Chain in Phoenix, Arizona, 2008 |
| Q36836691 | A case study on Salmonella enterica serovar Typhimurium at a dairy farm associated with massive sparrow death |
| Q31143325 | A comparison of non-typhoidal Salmonella from humans and food animals using pulsed-field gel electrophoresis and antimicrobial susceptibility patterns |
| Q34408139 | A composite model for subgroup identification and prediction via bicluster analysis |
| Q60530748 | A food-borne outbreak of Shigella sonnei gastroenteritis, Austria, 2008 |
| Q44886638 | A foodborne outbreak of enterotoxigenic E. coli and Salmonella Anatum infection after a high-school dinner in Denmark, November 2006. |
| Q35919194 | A multi-drug resistant Salmonella Typhimurium ST213 human-invasive strain (33676) containing the bla CMY-2 gene on an IncF plasmid is attenuated for virulence in BALB/c mice |
| Q50101932 | A multistate outbreak of Salmonella enterica Serotype Newport infection linked to mango consumption: impact of water-dip disinfestation technology |
| Q57997131 | A national case-control study of risk factors for listeriosis in Australia |
| Q39299799 | A recurrent, multistate outbreak of salmonella serotype agona infections associated with dry, unsweetened cereal consumption, United States, 2008. |
| Q28080726 | A review approaches to identify enteric bacterial pathogens |
| Q35633939 | A single-nucleotide-polymorphism-based multilocus genotyping assay for subtyping lineage I isolates of Listeria monocytogenes |
| Q50067505 | A survey for serotyping, antibiotic resistance profiling and PFGE characterization of and the potential multiplication of restaurant Salmonella isolates. |
| Q38449940 | A waterborne outbreak of gastroenteritis with multiple etiologies among resort island visitors and residents: Ohio, 2004. |
| Q36129906 | Added value of a household-level study during an outbreak investigation of Salmonella serotype Saintpaul infections, New Mexico 2008. |
| Q33876570 | Altered growth, pigmentation, and antimicrobial susceptibility properties of Staphylococcus aureus due to loss of the major cold shock gene cspB. |
| Q37119956 | Ambler class A extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella spp. in Canadian hospitals |
| Q64124588 | An Overview of PulseNet USA Databases |
| Q35156291 | An association of genotypes and antimicrobial resistance patterns among Salmonella isolates from pigs and humans in Taiwan |
| Q37902456 | An outbreak of Burkholderia cepacia complex associated with intrinsically contaminated nasal spray |
| Q36137262 | An outbreak of E. coli O157:H7 hemorrhagic colitis associated with unpasteurized gouda cheese. |
| Q54442932 | An outbreak of Escherichia coli O157:H7 infection in southern Sweden associated with consumption of fermented sausage; aspects of sausage production that increase the risk of contamination. |
| Q40573809 | An outbreak of febrile gastroenteritis associated with delicatessen meat contaminated with Listeria monocytogenes |
| Q34231626 | Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing |
| Q43766411 | Antibiotic resistance and diversity of Salmonella enterica serovars associated with broiler chickens |
| Q54279868 | Antibiotic resistance and molecular typing of Photobacterium damselae subsp. damselae, isolated from seafood. |
| Q42622563 | Antimicrobial drug resistance patterns among cattle- and human-associated Salmonella strains |
| Q33210667 | Application of molecular genetic methods in diagnostics and epidemiology of food-borne bacterial pathogens |
| Q34974995 | Application of molecular techniques to the study of hospital infection |
| Q35193186 | Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology |
| Q35094529 | Applications of a cell culture system for studying the interaction of Anaplasma marginale with tick cells |
| Q28077683 | Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing? |
| Q33295079 | Association of Escherichia coli O157:H7 tir polymorphisms with human infection |
| Q37058874 | Association of genomic O island 122 of Escherichia coli EDL 933 with verocytotoxin-producing Escherichia coli seropathotypes that are linked to epidemic and/or serious disease |
| Q33409684 | Associations of age and sex with the clinical outcome and incubation period of Shiga toxin-producing Escherichia coli O104:H4 infections, 2011. |
| Q36022023 | Attributing illness to food. |
| Q31042425 | Attribution of Salmonella enterica serotype Hadar infections using antimicrobial resistance data from two points in the food supply system |
| Q34215944 | Automated Ribotyping and Pulsed-Field Gel Electrophoresis for Rapid Identification of Multidrug-ResistantSalmonellaSerotype Newport |
| Q33887460 | Automated use of WHONET and SaTScan to detect outbreaks of Shigella spp. using antimicrobial resistance phenotypes |
| Q27012928 | Backyard poultry flocks and salmonellosis: a recurring, yet preventable public health challenge |
| Q36918026 | Bacterial genomes in epidemiology--present and future. |
| Q47710803 | Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance. |
| Q38368734 | Bioinformatic Analyses of Whole-Genome Sequence Data in a Public Health Laboratory |
| Q35755933 | Burkholderia cepacia infections associated with intrinsically contaminated ultrasound gel: the role of microbial degradation of parabens. |
| Q34143786 | Campylobacter coli in swine production: antimicrobial resistance mechanisms and molecular epidemiology |
| Q35680213 | Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7 |
| Q35804265 | Capacity of state and territorial health agencies to prevent foodborne illness |
| Q36098757 | Capsule gene analysis of invasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016 among nontypeable isolates |
| Q44458638 | Carbapenem-resistant Gram-negative bacilli in Canada 2009-10: results from the Canadian Nosocomial Infection Surveillance Program (CNISP). |
| Q35118816 | Cell invasion of poultry-associated Salmonella enterica serovar Enteritidis isolates is associated with pathogenicity, motility and proteins secreted by the type III secretion system |
| Q46395901 | Central nervous system infection with Listeria monocytogenes |
| Q36617112 | Changes in Predominance of Pulsed-Field Gel Electrophoresis Profiles of Bordetella pertussis Isolates, United States, 2000-2012 |
| Q33856145 | Characterization of Clostridium botulinum strains associated with an infant botulism case in the United Kingdom |
| Q42595341 | Characterization of Listeria monocytogenes recovered from 41 cases of sporadic listeriosis in Austria by serotyping and pulsed-field gel electrophoresis. |
| Q33569908 | Characterization of Salmonella Typhimurium isolates associated with septicemia in swine |
| Q37516303 | Characterization of Salmonella enterica subspecies I genovars by use of microarrays |
| Q36994354 | Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104 |
| Q35807703 | Characterizing the pathotype of neonatal meningitis causing Escherichia coli (NMEC). |
| Q33370432 | Chromosomal dynamism in progeny of outbreak-related sorbitol-fermenting enterohemorrhagic Escherichia coli O157:NM. |
| Q35922952 | Clonal complexes of Campylobacter jejuni identified by multilocus sequence typing correlate with strain associations identified by multilocus enzyme electrophoresis |
| Q35443757 | Colonisation with ESBL-producing and carbapenemase-producing Enterobacteriaceae, vancomycin-resistant enterococci, and meticillin-resistant Staphylococcus aureus in a long-term care facility over one year |
| Q33856392 | Community-wide outbreaks of clonally related CTX-M-14 beta-lactamase-producing Escherichia coli strains in the Calgary health region |
| Q64259967 | Comparative Analysis of Tools and Approaches for Source Tracking in a Food Facility Using Whole-Genome Sequence Data |
| Q51783026 | Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak. |
| Q34916552 | Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis |
| Q35096509 | Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution. |
| Q89981361 | Comparing PFGE, MLST, and WGS in monitoring the spread of macrolide and rifampin resistant Rhodococcus equi in horse production |
| Q54401143 | Comparison of Amplified Fragment Length Polymorphism and Pulsed-Field Gel Electrophoresis for Subtyping ofVibrio choleraeSerogroups O1 and O139 |
| Q42693740 | Comparison of Salmonella enterica serovar Abortusequi isolates of equine origin by pulsed-field gel electrophoresis and fluorescent amplified-fragment length polymorphism fingerprinting |
| Q35807131 | Comparison of molecular typing methods useful for detecting clusters of Campylobacter jejuni and C. coli isolates through routine surveillance |
| Q34719984 | Comparison of multilocus sequence typing, pulsed-field gel electrophoresis, and antimicrobial susceptibility typing for characterization of Salmonella enterica serotype Newport isolates |
| Q33396645 | Comparison of multilocus variable-number tandem-repeat analysis and multilocus sequence typing for differentiation of hemolytic-uremic syndrome-associated Escherichia coli (HUSEC) collection strains |
| Q43167929 | Comparison of prevalence, phenotype, and antimicrobial resistance of Salmonella serovars isolated from turkeys in Taiwan |
| Q24678718 | Comparison of subtyping methods for differentiating Salmonella enterica serovar Typhimurium isolates obtained from food animal sources |
| Q37568365 | Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada |
| Q33292924 | Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants. |
| Q37503915 | Construction of a Pan-Genome Allele Database of Salmonella enterica Serovar Enteritidis for Molecular Subtyping and Disease Cluster Identification |
| Q34232313 | Cost-effective application of pulsed-field gel electrophoresis to typing of Salmonella enterica Serovar Typhimurium |
| Q48266803 | Cryptic transmission of ST405 Escherichia coli carrying bla NDM-4 in hospital. |
| Q56967194 | DNA Typing Methods for Members of theCronobacterGenus |
| Q36670559 | DNA sequence analysis of regions surrounding blaCMY-2 from multiple Salmonella plasmid backbones. |
| Q30699787 | Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis |
| Q37685362 | Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Klebsiella pneumoniae |
| Q47241451 | Detecting and controlling foodborne infections in humans: lessons for China from the United States experience |
| Q43219324 | Detection of OXA-48 carbapenemase in the pandemic clone Escherichia coli O25b:H4-ST131 in the course of investigation of an outbreak of OXA-48-producing Klebsiella pneumoniae |
| Q43340196 | Detection of viable enterohemorrhagic Escherichia coli O157 using the combination of immunomagnetic separation with the reverse transcription multiplex TaqMan PCR system in food and stool samples |
| Q34747806 | Detection, isolation, and molecular subtyping of Escherichia coli O157:H7 and Campylobacter jejuni associated with a large waterborne outbreak |
| Q43336300 | Determination of Sources of Escherichia coli on Beef by Multiple-Locus Variable-Number Tandem Repeat Analysis |
| Q35807208 | Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni |
| Q36605561 | Development of a High Resolution Virulence Allelic Profiling (HReVAP) Approach Based on the Accessory Genome of Escherichia coli to Characterize Shiga-Toxin Producing E. coli (STEC). |
| Q34315424 | Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates |
| Q35869713 | Differentiation of Bacillus anthracis, B. cereus, and B. thuringiensis by using pulsed-field gel electrophoresis |
| Q31119598 | Direct comparison of four bacterial source tracking methods and use of composite data sets |
| Q35817340 | Disease risks from foods, England and Wales, 1996-2000. |
| Q40795504 | Dissemination of clonally related multidrug-resistant Klebsiella pneumoniae in Ireland. |
| Q36450035 | Distribution and Diversity of Salmonella Strains in Shipments of Hatchling Poultry, United States, 2013 |
| Q48705110 | Distribution of molecular subtypes within Salmonella enterica serotype Enteritidis phage type 4 and S. Typhimurium definitive phage type 104 in nine European countries, 2000-2004: results of an international multi-centre study. |
| Q33743388 | Distributions of Salmonella subtypes differ between two U.S. produce-growing regions |
| Q39606989 | Diversity of Campylobacter isolates from retail poultry carcasses and from humans as demonstrated by pulsed-field gel electrophoresis |
| Q82555057 | Dynamics of Escherichia coli O157:H7 outbreak detection and investigation, Minnesota 2000-2008 |
| Q37533056 | Early Recovery of Salmonella from Food Using a 6-Hour Non-selective Pre-enrichment and Reformulation of Tetrathionate Broth |
| Q35580147 | Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore |
| Q39022423 | Emergence of co-production of plasmid-mediated AmpC beta-lactamase and ESBL in cefoxitin-resistant uropathogenic Escherichia coli |
| Q35880918 | Emergence of multidrug-resistant Salmonella Paratyphi B dT+, Canada |
| Q34835201 | Emerging foodborne pathogens |
| Q33877766 | Enhanced subtyping scheme for Salmonella enteritidis |
| Q35792604 | Epidemiologic and molecular analysis of human tularemia, United States, 1964-2004. |
| Q37511196 | Epidemiology and molecular characterization of Streptococcus pyogenes recovered from scarlet fever patients in central Taiwan from 1996 to 1999 |
| Q33365831 | Epidemiology of Escherichia coli O157:H7 outbreaks, United States, 1982-2002. |
| Q26801344 | Escherichia coli O157 Outbreaks in the United States, 2003-2012 |
| Q35880782 | Escherichia coli O157 cluster evaluation |
| Q41097613 | Escherichia coli O157:H7 Outbreak Associated with Restaurant Beef Grinding |
| Q51340247 | Escherichia coli O157:H7 in drinking water from private water supplies in the Netherlands. |
| Q42254118 | Escherichia coli O157:H7 infections associated with consumption of locally grown strawberries contaminated by deer. |
| Q24522329 | Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standard |
| Q37074936 | Ethical and legal issues in infectious disease research and control |
| Q30370244 | Evaluation and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping Vibrio parahaemolyticus: an international multicenter collaborative study. |
| Q34990421 | Evaluation of Pulsed-Field Gel Electrophoresis as a Tool for Determining the Degree of Genetic Relatedness between Strains of Escherichia coli O157:H7 |
| Q30373052 | Evaluation of a Method Using Three Genomic Guided Escherichia coli Markers for Phylogenetic Typing of E. coli Isolates of Various Genetic Backgrounds |
| Q33404520 | Evaluation of a new chromogenic agar medium for detection of Shiga toxin-producing Escherichia coli (STEC) and relative prevalences of O157 and non-O157 STEC in Manitoba, Canada |
| Q43881020 | Evaluation of molecular typing methods for Escherichia coli O157:H7 isolates from cattle, food, and humans |
| Q37623590 | Evaluation of molecular typing of foodborne pathogens in European reference laboratories from 2012 to 2013 |
| Q37901945 | Everything at once: comparative analysis of the genomes of bacterial pathogens |
| Q39540627 | Evidence for horizontal and vertical transmission in Campylobacter passage from hen to her progeny |
| Q37703860 | Exploration of biases that affect the interpretation of restriction fragment patterns produced by pulsed-field gel electrophoresis |
| Q38675848 | External quality assessment for molecular typing of Salmonella 2013-2015: performance of the European national public health reference laboratories. |
| Q47555556 | Faecal Escherichia coli as biological indicator of spatial interaction between domestic pigs and wild boar (Sus scrofa) in Corsica |
| Q43133954 | First Canadian Salmonella enterica serovar typhi isolate harboring an integron |
| Q36063941 | First Description of the Extended Spectrum-Beta-Lactamase Gene blaCTX-M-109 in Salmonella Grumpensis Strains Isolated from Neonatal Nosocomial Infections in Dakar, Senegal |
| Q54067687 | First record of Leptospira borgpetersenii isolation in the Amami Islands, Japan. |
| Q37302076 | First report of human infection with Salmonella enterica serovar Apapa resulting from exposure to a pet lizard |
| Q42273758 | Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes |
| Q34117331 | Foodborne illness: is it on the rise? |
| Q36175018 | Foodborne outbreaks of shigellosis in the USA, 1998-2008 |
| Q50028718 | Four multistate outbreaks of human Salmonella infections associated with live poultry contact, United States, 2009. |
| Q38800067 | Future challenges for tracking foodborne diseases: PulseNet, a 20-year-old US surveillance system for foodborne diseases, is expanding both globally and technologically |
| Q34201431 | Gastrointestinal disease outbreak detection using multiple data streams from electronic medical records |
| Q102210904 | Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises |
| Q42273128 | Genetic characteristics of Shiga toxin-producing E. coli O157, O26, O103, O111 and O145 isolates from humans, food, and cattle in Belgium. |
| Q33341203 | Genetic characterization of clinical and agri-food isolates of multi drug resistant Salmonella enterica serovar Heidelberg from Canada |
| Q39848671 | Genetic diversity among Escherichia coli O157:H7 isolates from Bovines living on farms in England and Wales |
| Q33207040 | Genetic diversity of Escherichia coli isolates in irrigation water and associated sediments: implications for source tracking |
| Q41971375 | Genetic heterogeneity of Shiga toxin-producing Escherichia coli strains isolated in Sao Paulo, Brazil, from 1976 through 2003, as revealed by pulsed-field gel electrophoresis |
| Q89114917 | GenomeTrakr proficiency testing for foodborne pathogen surveillance: an exercise from 2015 |
| Q35666138 | Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens |
| Q34364889 | Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US. |
| Q40833035 | Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence |
| Q44128351 | Genomic diversity of Legionella pneumophila serogroup 1 from environmental water sources and clinical specimens using pulsed-field gel electrophoresis (PFGE) from 1985 to 2007, Korea |
| Q39510755 | Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution |
| Q33283481 | Genotype diversity of Escherichia coli isolates in natural waters determined by PFGE and ERIC-PCR. |
| Q34974539 | Harmonization of pulsed-field gel electrophoresis protocols for epidemiological typing of strains of methicillin-resistant Staphylococcus aureus: a single approach developed by consensus in 10 European laboratories and its application for tracing th |
| Q34430650 | High interlaboratory reproducibility of DNA sequence-based typing of bacteria in a multicenter study |
| Q54490212 | Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. |
| Q40418138 | Importance of travel in domestically acquired typhoid fever infections: opportunities for prevention and early detection |
| Q38602670 | Improved traceability of Shiga-toxin-producing Escherichia coli using CRISPRs for detection and typing |
| Q36238845 | Improving Response to Foodborne Disease Outbreaks in the United States: Findings of the Foodborne Disease Centers for Outbreak Response Enhancement (FoodCORE), 2010-2012 |
| Q92279038 | In silico characteristics for re-emerging possibility of Vibrio cholerae genotypes in Iran |
| Q33813978 | Indistinguishable NDM-producing Escherichia coli isolated from recreational waters, sewage, and a clinical specimen in Ireland, 2016 to 2017. |
| Q43184078 | Inquiring into the Gaps of Campylobacter Surveillance Methods |
| Q34524764 | Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden |
| Q30239899 | Integrating Advanced Molecular Technologies into Public Health |
| Q42001437 | Isolation and characterization of Campylobacter spp. from Antarctic fur seals (Arctocephalus gazella) at Deception Island, Antarctica. |
| Q92997161 | Laboratory Review of Foodborne Disease Investigations in Washington State 2007-2017 |
| Q44395359 | Liquid chromatography/mass spectrometry characterization of Escherichia coli and Shigella species |
| Q46137108 | Listeria monocytogenes in platelets: a case report |
| Q30912460 | Listeria monocytogenes isolates from invasive infections: variation of sero- and genotypes during an 11-year period in Finland |
| Q34996034 | Listeria monocytogenes virulence and pathogenicity, a food safety perspective |
| Q57973242 | Listeria monocytogenes: A Target for Bacteriophage Biocontrol |
| Q46045208 | Lives of a Cell: 40 Years Later, A Third Interpretation |
| Q35540881 | Longitudinal study of fecal shedding of Escherichia coli O157:H7 in feedlot cattle: predominance and persistence of specific clonal types despite massive cattle population turnover |
| Q31097177 | MALDI TOF MS profiling of bacteria at the strain level: a review |
| Q36094412 | Microbial forensics: the next forensic challenge |
| Q33859088 | Microbiological aspects of the investigation that traced the 1998 outbreak of listeriosis in the United States to contaminated hot dogs and establishment of molecular subtyping-based surveillance for Listeria monocytogenes in the PulseNet network |
| Q46248509 | Microbiome at the Frontier of Personalized Medicine |
| Q58870866 | Molecular Characterization of Shiga Toxin-ProducingEscherichia coli |
| Q40323935 | Molecular Subtyping and Source Attribution of Campylobacter Isolated from Food Animals |
| Q28818820 | Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon |
| Q37061620 | Molecular characterization and analysis of high-level multidrug-resistance of Shigella flexneri serotype 4s strains from China |
| Q41837745 | Molecular characterization of Verocytotoxigenic Escherichia coli O157:H7 isolates from Argentina by Multiple-Loci VNTR Analysis (MLVA). |
| Q33554703 | Molecular characterization of cefoxitin-resistant Escherichia coli from Canadian hospitals |
| Q54285889 | Molecular characterization of enterohemorrhagic E. coli O157 isolated from animal fecal and food samples in Eastern China. |
| Q35623150 | Molecular epidemiology in the public health and hospital environments |
| Q43498862 | Molecular epidemiology of Bordetella pertussis isolated in Taiwan, 1992-1997. |
| Q35758933 | Molecular epidemiology of CTX-M-producing Escherichia coli in the Calgary Health Region: emergence of CTX-M-15-producing isolates |
| Q34738242 | Molecular epidemiology of Salmonella enterica serovar typhimurium isolates from cattle in hokkaido, Japan: evidence of clonal replacement and characterization of the disseminated clone |
| Q36313492 | Molecular epidemiology of blaCMY-2 plasmids carried by Salmonella enterica and Escherichia coli isolates from cattle in the Pacific Northwest |
| Q35220943 | Molecular epidemiology of hospital-acquired vancomycin-resistant enterococci |
| Q50081842 | Molecular genotyping of Salmonella enterica Abortusovis by pulsed field gel electrophoresis |
| Q50045583 | Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada |
| Q46153672 | Molecular subtyping for Escherichia coli O157: H7 isolated in Taiwan |
| Q34396368 | Molecular subtyping to detect human listeriosis clusters |
| Q40389247 | Molecular surveillance of shiga toxigenic Escherichia coli O157 by PulseNet USA. |
| Q26779244 | Molecular tools in understanding the evolution of Vibrio cholerae |
| Q43875014 | Molecular typing of Salmonella enterica serotype Typhimurium and serotype 4,5,12:i:- isolates from cattle by multiple-locus variable-number tandem-repeats analysis |
| Q30363116 | Molecular typing of Salmonella enterica serovar Enteritidis isolates from food-producing animals in Japan by multilocus variable-number tandem repeat analysis: evidence of clonal dissemination and replacement. |
| Q50051302 | Molecular typing of Salmonella enterica serovar Sofia in Australia by pulsed-field gel electrophoresis and repetitive element PCR typing |
| Q24533445 | Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States |
| Q43223859 | Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates. |
| Q21090489 | Multilocus sequence typing as a replacement for serotyping in Salmonella enterica |
| Q24529957 | Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium |
| Q34750677 | Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis |
| Q35215856 | Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations |
| Q44751730 | Multilocus sequence typing: the molecular marker of the Internet era |
| Q34950346 | Multilocus variable-number tandem repeat analysis distinguishes outbreak and sporadic Escherichia coli O157:H7 isolates |
| Q54357025 | Multiple-locus variable-nucleotide tandem repeat subtype analysis implicates European starlings as biological vectors for Escherichia coli O157:H7 in Ohio, USA. |
| Q40717574 | Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli. |
| Q36088589 | Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR |
| Q36539762 | Multiple-locus variable-number tandem-repeat analysis as a tool for subtyping Listeria monocytogenes strains |
| Q35073548 | Multiplex PCR-based method for identification of common clinical serotypes of Salmonella enterica subsp. enterica |
| Q40508572 | Multistate Outbreak of Human Salmonella Typhimurium Infections Linked to Pet Hedgehogs - United States, 2011-2013. |
| Q43350308 | Multistate outbreak of Escherichia coli O157:H7 infections associated with in-store sampling of an aged raw-milk Gouda cheese, 2010. |
| Q40381021 | Multistate outbreak of Listeria monocytogenes infections linked to whole apples used in commercially produced, prepackaged caramel apples: United States, 2014-2015. |
| Q40368240 | Multistate outbreak of Listeriosis linked to turkey deli meat and subsequent changes in US regulatory policy |
| Q33718242 | Multistate outbreak of human Salmonella Typhimurium infections linked to live poultry from agricultural feed stores and mail-order hatcheries, United States 2013 |
| Q35880523 | Multistate shigellosis outbreak and commercially prepared food, United States |
| Q30248315 | Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing |
| Q40553650 | Neonatal listeriosis: Uncommon or misdiagnosed? |
| Q26864280 | Norovirus |
| Q40701541 | Nosocomial Outbreak of a Novel Extended-Spectrum β-Lactamase Salmonella enterica Serotype Isangi Among Surgical Patients |
| Q24600002 | Novel surveillance network for norovirus gastroenteritis outbreaks, United States |
| Q37015643 | Obligations to report outbreaks of foodborne disease under the International Health Regulations (2005). |
| Q49954625 | Occurrence, Characterization, and Antimicrobial Susceptibility of Salmonella enterica in Slaughtered Pigs in Sardinia. |
| Q31148704 | Optimization of computer software settings improves accuracy of pulsed-field gel electrophoresis macrorestriction fragment pattern analysis |
| Q37072473 | Optimization of pulse-field gel electrophoresis for subtyping of Klebsiella pneumoniae |
| Q33704581 | Optimization of pulsed-field gel electrophoresis for Legionella pneumophila subtyping |
| Q54438563 | Outbreak of Escherichia coli 0157:H7 infections associated with consumption of beef donair. |
| Q33366763 | Outbreak of Escherichia coli O157:H7 infections associated with nonintact blade-tenderized frozen steaks sold by door-to-door vendors |
| Q43518578 | Outbreak of healthcare-associated infection and colonization with multidrug-resistant Salmonella enterica serovar Senftenberg in Florida |
| Q46943782 | Outbreak of multidrug-resistant Salmonella enterica serotype Typhimurium Definitive Type 104 infection linked to commercial ground beef, northeastern United States, 2003-2004. |
| Q50073422 | Outbreak with multi-resistant Salmonella Typhimurium DT104 linked to carpaccio, Denmark, 2005. |
| Q36233236 | Outbreaks associated with cantaloupe, watermelon, and honeydew in the United States, 1973-2011. |
| Q36114735 | Outbreaks attributed to fresh leafy vegetables, United States, 1973-2012. |
| Q64128792 | Outbreaks of Salmonella enterica infections linked to animal contact: Demographic and outbreak characteristics and comparison to foodborne outbreaks-United States, 2009-2014 |
| Q50058583 | Outbreaks of salmonellosis in Minnesota (1998 through 2006) associated with frozen, microwaveable, breaded, stuffed chicken products |
| Q35671257 | PCR melting profile as a tool for outbreak studies of Salmonella enterica in chickens |
| Q37400248 | PGAdb-builder: A web service tool for creating pan-genome allele database for molecular fine typing |
| Q42619738 | Pathogen profiling for disease management and surveillance. |
| Q38076522 | Pathogenesis of listeriosis during pregnancy |
| Q48080920 | Pathotyping of Salmonella enterica by analysis of single-nucleotide polymorphisms in cyaA and flanking 23S ribosomal sequences |
| Q33714343 | Performance assessment of DNA fragment sizing by high-sensitivity flow cytometry and pulsed-field gel electrophoresis |
| Q41038427 | Persistence of Escherichia coli O157 isolates on bovine farms in England and Wales. |
| Q37511401 | Phage types and genotypes of shiga toxin-producing Escherichia coli O157:H7 isolates from humans and animals in spain: identification and characterization of two predominating phage types (PT2 and PT8). |
| Q35993279 | Phenotypic & molecular characterization of AmpC β-lactamases among Escherichia coli, Klebsiella spp. & Enterobacter spp. from five Indian Medical Centers |
| Q47194191 | Phenotypic and Genotypic Eligible Methods for Salmonella Typhimurium Source Tracking |
| Q33359875 | Phenotypic and genotypic analyses of enterohemorrhagic Escherichia coli O145 strains from patients in Germany |
| Q33547216 | Phylogenetic analysis of enterohemorrhagic Escherichia coli O157, Germany, 1987-2008 |
| Q64277343 | Phylogenetic characterization of from pig production and humans in Thailand and Laos border provinces |
| Q37282954 | Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms |
| Q34978874 | Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains |
| Q34380583 | Precautions against biological and chemical terrorism directed at food and water supplies |
| Q34835077 | Predictive microbiology: providing a knowledge-based framework for change management |
| Q43170906 | Prevalence and Persistence of Listeria monocytogenes in Ready-to-Eat Tilapia Sashimi Processing Plants |
| Q46877865 | Prevalence of Escherichia coli O157:H7 in the American bison (Bison bison). |
| Q34655405 | Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms |
| Q42259548 | Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates |
| Q91902521 | Public health and clinical laboratories: Partners in the age of emerging infections |
| Q35927552 | Public health surveillance and the prevention of injuries in sports: what gets measured gets done |
| Q36789378 | PulseNet China |
| Q38057688 | PulseNet China, a model for future laboratory-based bacterial infectious disease surveillance in China |
| Q93039504 | PulseNet: Entering the Age of Next-Generation Sequencing |
| Q34130232 | Pulsed field gel electrophoresis: A review of application and interpretation in the molecular epidemiology of infectious disease |
| Q48406868 | Pulsed-field gel electrophoresis |
| Q57113902 | Pulsed-field gel electrophoresis (PFGE) analysis of temporally matched Listeria monocytogenes isolates from human clinical cases, foods, ruminant farms, and urban and natural environments reveals source-associated as well as widely distributed PFGE t |
| Q35093176 | Pulsed-field gel electrophoresis diversity of human and bovine clinical Salmonella isolates. |
| Q34907958 | Pulsed-field gel electrophoresis for Salmonella infection surveillance, Texas, USA, 2007. |
| Q37059039 | Pulsed-field gel electrophoresis typing of oxacillin-resistant Staphylococcus aureus isolates from the United States: establishing a national database |
| Q42700137 | Pulsed-field profile diversities of Salmonella Enteritidis, S. Infantis, and S. Corvallis in Japan |
| Q38686492 | Pulsotype Diversity of Clostridium botulinum Strains Containing Serotypes A and/or B Genes |
| Q28391379 | Quality sample collection, handling, and preservation for an effective microbial forensics program |
| Q35981823 | Rapid characterisation of Klebsiella oxytoca isolates from contaminated liquid hand soap using mass spectrometry, FTIR and Raman spectroscopy. |
| Q50080020 | Re-assessment of risk factors for sporadic Salmonella serotype Enteritidis infections: a case-control study in five FoodNet Sites, 2002-2003. |
| Q44576300 | Real-time subtyping via PFGE reveals potential epidemiological relatedness among human salmonellosis cases in Northern Italy |
| Q34375210 | Recent advances in understanding enteric pathogenic Escherichia coli. |
| Q26753033 | Recent and emerging innovations in Salmonella detection: a food and environmental perspective |
| Q38462672 | Recurrent multistate outbreak of Salmonella Newport associated with tomatoes from contaminated fields, 2005. |
| Q50073620 | Relationship of pulsed-field profiles with key phage types of Salmonella enterica serotype Enteritidis in Europe: results of an international multi-centre study |
| Q37175327 | Resistance genes, phage types and pulsed field gel electrophoresis pulsotypes in Salmonella enterica strains from laying hen farms in southern Italy |
| Q41006900 | Resistance-Gene Cassettes Associated With Salmonella enterica Genotypes |
| Q35804910 | Salmonella enterica pulsed-field gel electrophoresis clusters, Minnesota, USA, 2001-2007 |
| Q36558994 | Salmonella enterica serovar Typhi variants in long-term carriers |
| Q42112113 | Salmonella serovar identification using PCR-based detection of gene presence and absence |
| Q47145087 | Scientific Opinion of the Panel on Biological Hazards (BIOHAZ) - Monitoring of verotoxigenic Escherichia coli (VTEC) and identification of human pathogenic VTEC types |
| Q47154045 | Scientific Opinion on the evaluation of molecular typing methods for major food‐borne microbiological hazards and their use for attribution modelling, outbreak investigation and scanning surveillance: Part 1 (evaluation of methods and applications) |
| Q49874383 | Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis |
| Q42038888 | Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp. |
| Q38887442 | Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco |
| Q35942849 | Sequence typing confirms that a predominant Listeria monocytogenes clone caused human listeriosis cases and outbreaks in Canada from 1988 to 2010 |
| Q42394756 | Shiga toxin antigen detection should not replace sorbitol MacConkey agar screening of stool specimens |
| Q41847926 | Shiga-toxigenic Escherichia coli O157 in agricultural fair livestock, United States |
| Q38346001 | Shigella flexneri serotype 1 infections in men who have sex with men in Vancouver, Canada |
| Q33384897 | Short-term genome evolution of Listeria monocytogenes in a non-controlled environment |
| Q74331340 | Similar Listeria monocytogenes pulsotypes detected in several foods originating from different sources |
| Q34487636 | Simultaneous analysis of multiple enzymes increases accuracy of pulsed-field gel electrophoresis in assigning genetic relationships among homogeneous Salmonella strains |
| Q31161966 | Single-Nucleotide Polymorphisms in the Whole-Genome Sequence Data of Shiga Toxin-Producing Escherichia coli O157:H7/H- Strains by Cultivation |
| Q58743077 | Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses |
| Q37081114 | Subtyping of Salmonella enterica Subspecies I Using Single-Nucleotide Polymorphisms in Adenylate Cyclase |
| Q34748926 | Subtyping of Salmonella enterica serotype enteritidis strains by manual and automated PstI-SphI ribotyping |
| Q94464499 | Supershed Escherichia coli O157:H7 Has Potential for Increased Persistence on the Rectoanal Junction Squamous Epithelial Cells and Antibiotic Resistance |
| Q37302764 | Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections |
| Q37074965 | Teaming up to prevent foodborne disease |
| Q36170524 | The 'farm to plate' approach to food safety - Everyone's business |
| Q64125686 | The Cano-eMLST Program: An Approach for the Calculation of Canonical Extended Multi-Locus Sequence Typing, Making Comparison of Genetic Differences Among Bunches of Bacterial Strains |
| Q31162291 | The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data |
| Q35901714 | The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies |
| Q43526671 | The diversity of Mycoplasma hyopneumoniae within and between herds using pulsed-field gel electrophoresis |
| Q36517569 | The evaluation and application of multilocus variable number tandem repeat analysis (MLVA) for the molecular epidemiological study of Salmonella enterica subsp. enterica serovar Enteritidis infection |
| Q35073432 | The key role of pulsed-field gel electrophoresis in investigation of a large multiserotype and multistate food-borne outbreak of Salmonella infections centered in Pennsylvania |
| Q46407062 | The need for systematic molecular subtyping surveillance to timely detect food-borne, bacterial outbreaks |
| Q54472811 | The use of outbreak information in the interpretation of clustering of reported cases of Escherichia coli O157 in space and time in Alberta, Canada, 2000-2002. |
| Q44717402 | The use of randomization tests to assess the degree of similarity in PFGE patterns of E. coli O157 isolates from known outbreaks and statistical space-time clusters. |
| Q30233534 | Threat of a biological terrorist attack on the US food supply: the CDC perspective |
| Q37009045 | Timeliness of enteric disease surveillance in 6 US states |
| Q37740808 | Towards an integrated food safety surveillance system: a simulation study to explore the potential of combining genomic and epidemiological metadata. |
| Q50057267 | Transmission of Salmonella between wildlife and meat-production animals in Denmark |
| Q92717431 | Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States |
| Q36414074 | Use of molecular epidemiology in veterinary practice |
| Q97072015 | Use of next-generation sequencing in microbial risk assessment |
| Q35690449 | Use of pulsed-field gel electrophoresis of conserved XbaI fragments for identification of swine Salmonella serotypes |
| Q35220959 | Usefulness of inter-IS1 spacer polymorphisms for subtyping of Shigella sonnei isolates |
| Q36506341 | Using major outer membrane protein typing as an epidemiological tool to investigate outbreaks caused by milk-borne Campylobacter jejuni isolates in California |
| Q36891935 | Utility of Multilocus Sequence Typing as an Epidemiological Tool for Investigation of Outbreaks of Gastroenteritis Caused by Campylobacter jejuni |
| Q35220899 | Variable-number tandem repeats that are useful in genotyping isolates of Salmonella enterica subsp. enterica serovars Typhimurium and Newport |
| Q33378926 | Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks |
| Q93181876 | Viral, bacterial, and protozoan pathogens and fecal markers in wells supplying groundwater to public water systems in Minnesota, USA |
| Q58771969 | Virulence gene profiles and molecular genetic characteristics of diarrheagenic from a hospital in western China |
| Q35793964 | Web-based surveillance and global Salmonella distribution, 2000-2002 |
| Q64912888 | Whole Genome Sequencing Based Surveillance of L. monocytogenes for Early Detection and Investigations of Listeriosis Outbreaks. |
| Q59133332 | Whole-Genome Sequencing and Bioinformatic Analysis of Isolates from Foodborne Illness Outbreaks of Campylobacter jejuni and Salmonella enterica |
| Q38635425 | Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis |
| Q34325288 | Whole-genome mapping: a new paradigm in strain-typing technology |
| Q37666905 | Wine oxidation and the role of cork |
| Q21559414 | Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis |
| Q60922595 | Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States |
| Q93049719 | lptG contributes to changes in membrane permeability and the emergence of multidrug hypersusceptibility in a cystic fibrosis isolate of Pseudomonas aeruginosa |
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