| scholarly article | Q13442814 |
| P2093 | author name string | Amanda E Hargrove | |
| Emily J McFadden | |||
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| Discovery and functional analysis of lncRNAs: Methodologies to investigate an uncharacterized transcriptome | Q26781885 | ||
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| MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. | Q34142871 | ||
| RNA Mimics of Green Fluorescent Protein | Q34204419 | ||
| Estimation of Secondary Structure in Ribonucleic Acids | Q34223410 | ||
| Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification | Q34247942 | ||
| Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data | Q34253269 | ||
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| Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli | Q34300894 | ||
| Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity | Q34312979 | ||
| Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA | Q34378909 | ||
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| Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). | Q34573154 | ||
| Mapping networks of physical interactions between genomic elements using 5C technology | Q34578862 | ||
| Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex | Q35916791 | ||
| The Xist RNA-PRC2 complex at 20-nm resolution reveals a low Xist stoichiometry and suggests a hit-and-run mechanism in mouse cells | Q35946288 | ||
| Control of Chromatin Structure by Long Noncoding RNA. | Q36096797 | ||
| NEAT1 Long Noncoding RNA and Paraspeckle Bodies Modulate HIV-1 Posttranscriptional Expression | Q36576671 | ||
| Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators. | Q36609876 | ||
| N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding | Q36653832 | ||
| Solution NMR of large molecules and assemblies | Q36702066 | ||
| Long noncoding RNAs and the genetics of cancer. | Q36959100 | ||
| Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci | Q37015478 | ||
| Small angle neutron and X-ray scattering in structural biology: recent examples from the literature | Q37063348 | ||
| The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex | Q37266000 | ||
| Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus. | Q37441308 | ||
| Long noncoding RNAs: fresh perspectives into the RNA world | Q37524850 | ||
| Transcriptional Silencing by Single-Stranded RNAs Targeting a Noncoding RNA That Overlaps a Gene Promoter | Q37541625 | ||
| An unusual topological structure of the HIV-1 Rev response element | Q37570088 | ||
| Isotope labeling strategies for NMR studies of RNA | Q37605627 | ||
| Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry | Q37628044 | ||
| Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing. | Q37972715 | ||
| Structure and function of long noncoding RNAs in epigenetic regulation | Q38086776 | ||
| MALAT1 — a paradigm for long noncoding RNA function in cancer | Q38093120 | ||
| Overcoming the challenges of siRNA activation of innate immunity: design better therapeutic siRNAs | Q38260609 | ||
| Visualization of lncRNA by single-molecule fluorescence in situ hybridization | Q38301924 | ||
| Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution | Q38303414 | ||
| Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain | Q38313742 | ||
| Fluorescence Polarization Anisotropy to Measure RNA Dynamics | Q38357799 | ||
| Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles | Q38389887 | ||
| The Functions of MicroRNAs: mRNA Decay and Translational Repression | Q38599455 | ||
| MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures. | Q38849879 | ||
| PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation. | Q38883808 | ||
| Opposing Roles for the lncRNA Haunt and Its Genomic Locus in Regulating HOXA Gene Activation during Embryonic Stem Cell Differentiation | Q38884896 | ||
| Downregulated LncRNA-ANCR promotes osteoblast differentiation by targeting EZH2 and regulating Runx2 expression | Q39189037 | ||
| RNAi in Cultured Mammalian Cells Using Synthetic siRNAs: Table 1 | Q39285226 | ||
| The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth | Q39442136 | ||
| Visualization of Single RNA Transcripts in Situ | Q39465222 | ||
| The gene-silencing efficiency of siRNA is strongly dependent on the local structure of mRNA at the targeted region | Q40514682 | ||
| Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses | Q28283946 | ||
| Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq | Q28513635 | ||
| Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE) | Q28914729 | ||
| Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture | Q29300664 | ||
| Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome | Q29547359 | ||
| Localization of ASH1 mRNA particles in living yeast | Q29614818 | ||
| Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution | Q29617336 | ||
| Non-coding RNAs in human disease | Q29618039 | ||
| Epigenetic regulation by long noncoding RNAs | Q29618108 | ||
| Improved free-energy parameters for predictions of RNA duplex stability | Q29618274 | ||
| The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids | Q29619486 | ||
| Towards an integrative structural biology approach: combining Cryo-TEM, X-ray crystallography, and NMR. | Q30361547 | ||
| Structural architecture of the human long non-coding RNA, steroid receptor RNA activator | Q30413466 | ||
| Promiscuous RNA binding by Polycomb repressive complex 2. | Q30457030 | ||
| Toward a consensus on the binding specificity and promiscuity of PRC2 for RNA. | Q30459421 | ||
| The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse | Q30586611 | ||
| Improving RNA secondary structure prediction with structure mapping data | Q30901947 | ||
| Long noncoding RNAs and prostate carcinogenesis: the missing 'linc'? | Q33358455 | ||
| Methods to enable the design of bioactive small molecules targeting RNA. | Q33609375 | ||
| Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin. | Q33631109 | ||
| Jarid2 and PRC2, partners in regulating gene expression | Q33631152 | ||
| Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs | Q33741897 | ||
| REAP: A two minute cell fractionation method | Q33743569 | ||
| Methods for comprehensive experimental identification of RNA-protein interactions | Q33745576 | ||
| Atomic accuracy in predicting and designing noncanonical RNA structure | Q33789129 | ||
| The mutate-and-map protocol for inferring base pairs in structured RNA. | Q33841723 | ||
| Identification of an imprinted gene, Meg3/Gtl2 and its human homologue MEG3, first mapped on mouse distal chromosome 12 and human chromosome 14q. | Q33897694 | ||
| Regulatory interactions between RNA and polycomb repressive complex 2. | Q33938354 | ||
| Surface plasmon resonance investigation of RNA aptamer-RNA ligand interactions. | Q33958459 | ||
| Transcriptional regulatory functions of nuclear long noncoding RNAs | Q33970112 | ||
| Next-generation transcriptome assembly | Q34012644 | ||
| Kcnq1ot1: A chromatin regulatory RNA | Q34025826 | ||
| Accelerated chromatin biochemistry using DNA-barcoded nucleosome libraries | Q34034234 | ||
| Functional Characterization of Long Noncoding RNA Lnc_bc060912 in Human Lung Carcinoma Cells. | Q34043672 | ||
| The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. | Q34043853 | ||
| A 1536-well fluorescence polarization assay to screen for modulators of the MUSASHI family of RNA-binding proteins. | Q34054941 | ||
| A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET. | Q34094042 | ||
| P433 | issue | 11 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1615-1630 | |
| P577 | publication date | 2016-02-09 | |
| P13046 | publication type of scholarly work | review article | Q7318358 |
| P1433 | published in | Biochemistry | Q764876 |
| P1476 | title | Biochemical Methods To Investigate lncRNA and the Influence of lncRNA:Protein Complexes on Chromatin | |
| P478 | volume | 55 |
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