miRNA in situ hybridization in formaldehyde and EDC-fixed tissues

scientific article published on 11 January 2009

miRNA in situ hybridization in formaldehyde and EDC-fixed tissues is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/NMETH.1294
P932PMC publication ID2838186
P698PubMed publication ID19137005
P5875ResearchGate publication ID23771232

P50authorThomas TuschlQ90093
Mihaela ZavolanQ15671899
Markus HafnerQ30502536
Sara H RouhanifardQ83173599
P2093author name stringPhilipp Berninger
Janos Ludwig
Aleksandra Mihailovic
Cindy Lim
John T G Pena
Daniel Holoch
Cherin Sohn-Lee
P2860cites workMesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growthQ24536456
A mammalian microRNA expression atlas based on small RNA library sequencingQ24644709
Cerebellar neurodegeneration in the absence of microRNAsQ24676165
Altered MicroRNA expression confined to specific epithelial cell subpopulations in breast cancerQ28261558
MicroRNAs of the mammalian eye display distinct and overlapping tissue specificityQ28273936
MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expressionQ28281639
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1.Q33722837
Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samplesQ34709376
Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blotQ35829307
Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR.Q35902026
Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probesQ36180247
MicroRNA expression in the adult mouse central nervous systemQ36470289
The neuronal microRNA systemQ36657801
A novel use for a carbodiimide compound for the fixation of fluorescent and non-fluorescent calcium indicators in situ following physiological experimentsQ36854339
In situ detection of precursor and mature microRNAs in paraffin embedded, formalin fixed tissues and cell preparationsQ37044776
The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family membersQ37089444
Thermodynamics of DNA-RNA heteroduplex formation: effects of locked nucleic acid nucleotides incorporated into the DNA strand.Q38294854
RAKE and LNA-ISH reveal microRNA expression and localization in archival human brainQ38439681
Reactions of Nucleic Acids and NucleoDroteins with FormaldehydeQ39925947
Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplificationQ46941943
Thermodynamics and NMR of internal G.T mismatches in DNAQ73611953
In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probesQ82043764
P433issue2
P304page(s)139-141
P577publication date2009-01-11
P1433published inNature MethodsQ680640
P1476titlemiRNA in situ hybridization in formaldehyde and EDC-fixed tissues
P478volume6

Reverse relations

cites work (P2860)
Q28117980A Sex-Specific MicroRNA-96/5-Hydroxytryptamine 1B Axis Influences Development of Pulmonary Hypertension
Q91235239A gene regulatory network to control EMT programs in development and disease
Q49185499A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence
Q35440962A sensitive alternative for microRNA in situ hybridizations using probes of 2'-O-methyl RNA + LNA.
Q37015874A whole-mount in situ hybridization method for microRNA detection in Caenorhabditis elegans
Q37426569Absolute quantification of microRNAs by using a universal reference
Q37262741Advances in microRNA experimental approaches to study physiological regulation of gene products implicated in CNS disorders
Q39400566An electrochemical signal 'off-on' sensing platform for microRNA detection
Q37120889Analysis of microRNA niches: techniques to measure extracellular microRNA and intracellular microRNA in situ
Q36506773Attenuation of Semliki Forest virus neurovirulence by microRNA-mediated detargeting
Q35681765Biodistribution of small interfering RNA at the organ and cellular levels after lipid nanoparticle-mediated delivery
Q51867789Cell-specific visualization of jasmonates in wounded tomato and Arabidopsis leaves using jasmonate-specific antibodies.
Q41676073Climbing fibers induce microRNA transcription in cerebellar Purkinje cells
Q37189876Combined fluorescent in situ hybridization for detection of microRNAs and immunofluorescent labeling for cell-type markers
Q92669298Combined microRNA and mRNA detection in mammalian retinas by in situ hybridization chain reaction
Q33895890Defining larger roles for "tiny" RNA molecules: role of miRNAs in neurodegeneration research
Q39646859Detection of MicroRNAs in Cultured Cells and Paraffin-Embedded Tissue Specimens by In Situ Hybridization
Q39158031Detection of miRNA in live cells by using templated RuII-catalyzed unmasking of a fluorophore.
Q27010091Detection of miRNAs with a nanopore single-molecule counter
Q55279990Differential 3' Processing of Specific Transcripts Expands Regulatory and Protein Diversity Across Neuronal Cell Types.
Q37218797Differential regulation of mature and precursor microRNA expression by NMDA and metabotropic glutamate receptor activation during LTP in the adult dentate gyrus in vivo
Q56752555Distinct expression of the neurotoxic microRNA family let-7 in the cerebrospinal fluid of patients with Alzheimer's disease
Q37428304Double In situ Hybridization for MicroRNAs and mRNAs in Brain Tissues.
Q37603435Downregulated expression of microRNA-124 in pediatric intestinal failure patients modulates macrophages activation by inhibiting STAT3 and AChE.
Q34259934Downregulation of miR-92a is associated with aggressive breast cancer features and increased tumour macrophage infiltration
Q36270953Dysregulated miRNA biogenesis downstream of cellular stress and ALS-causing mutations: a new mechanism for ALS.
Q30422283Effect of channel length on the electrical response of carbon nanotube field-effect transistors to deoxyribonucleic acid hybridization
Q64107024Emerging Roles of miRNAs in Brain Development and Perinatal Brain Injury
Q92032316Enterovirus A71 Oncolysis of Malignant Gliomas
Q57028633Expressing MicroRNA Sponge Drastically Improves the Insecticidal Activity of Baculovirus via Increasing the Level of Ecdysteroid Hormone in Larvae
Q35606143Expression profiling of synaptic microRNAs from the adult rat brain identifies regional differences and seizure-induced dynamic modulation
Q33658229Frequent downregulation of miR-34 family in human ovarian cancers
Q38015647Frontiers in preclinical safety biomarkers: microRNAs and messenger RNAs
Q34137987Functional MicroRNA Is Transferred between Glioma Cells
Q35740397Functional Studies of microRNAs in Neural Stem Cells: Problems and Perspectives
Q36465866General principals of miRNA biogenesis and regulation in the brain.
Q45817658General principles and methods for routine automated microRNA in situ hybridization and double labeling with immunohistochemistry
Q36237785Heterogeneity of miR-10b expression in circulating tumor cells
Q34037296HistoFlex--a microfluidic device providing uniform flow conditions enabling highly sensitive, reproducible and quantitative in situ hybridizations
Q49339932Hypothalamic miR-219 regulates individual metabolic differences in response to diet-induced weight cycling.
Q36114127Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study.
Q37298609Imaging individual microRNAs in single mammalian cells in situ.
Q34539123Impact of gastro-oesophageal reflux on microRNA expression, location and function.
Q54372283Impact of microRNA in normal and pathological respiratory epithelia.
Q36284875In situ measurement of miR-205 in malignant melanoma tissue supports its role as a tumor suppressor microRNA.
Q34332494K-Lysine acetyltransferase 2a regulates a hippocampal gene expression network linked to memory formation
Q38211596Lin28 and let-7: ancient milestones on the road from pluripotency to neurogenesis
Q38241162Long-term climbing fibre activity induces transcription of microRNAs in cerebellar Purkinje cells
Q46286049MicroRNA Detection by Whole-Mount In Situ Hybridization in C. elegans
Q33853911MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production
Q36037933MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review
Q48174132MicroRNA loss enhances learning and memory in mice
Q34009331MicroRNA profiling in subventricular zone after stroke: MiR-124a regulates proliferation of neural progenitor cells through Notch signaling pathway
Q37464945MicroRNA regulation of endothelial TREX1 reprograms the tumour microenvironment
Q35105269MicroRNA regulation of homeostatic synaptic plasticity
Q38323084MicroRNA regulation of the synaptic plasticity-related gene Arc.
Q35614391MicroRNA-124 is a subventricular zone neuronal fate determinant.
Q24634064MicroRNA-132–mediated loss of p120RasGAP activates the endothelium to facilitate pathological angiogenesis
Q51246978MicroRNA-135b inhibits odontoblast-like differentiation of human dental pulp cells by regulating Smad5 and Smad4.
Q40135764MicroRNA-146a Promotes Oligodendrogenesis in Stroke.
Q47109370MicroRNA-146b-5p Identified in Porcine Liver Donation Model is Associated with Early Allograft Dysfunction in Human Liver Transplantation
Q48257972MicroRNA-195-5p Regulates Osteogenic Differentiation of Periodontal Ligament Cells Under Mechanical Loading.
Q33692185MicroRNA-21 protects neurons from ischemic death
Q36580732MicroRNA-21 silencing enhances the cytotoxic effect of the antiangiogenic drug sunitinib in glioblastoma
Q59800766MicroRNA-29b Mediates Lung Mesenchymal-Epithelial Transition and Prevents Lung Fibrosis in the Silicosis Model
Q33920068MicroRNA-9 Modulates Hes1 ultradian oscillations by forming a double-negative feedback loop
Q41910545MicroRNA-9 reveals regional diversity of neural progenitors along the anterior-posterior axis
Q36086370MicroRNA-Attenuated Clone of Virulent Semliki Forest Virus Overcomes Antiviral Type I Interferon in Resistant Mouse CT-2A Glioma
Q37726449MicroRNA-mediated gene silencing
Q34696427MicroRNAs and their applications in kidney diseases
Q36305641MicroRNAs are exported from malignant cells in customized particles
Q28072056MicroRNAs as regulators and mediators of forkhead box transcription factors function in human cancers
Q34325959MicroRNAs in human cancer
Q36073231MicroRNAs in the axon locally mediate the effects of chondroitin sulfate proteoglycans and cGMP on axonal growth
Q34594189MicroRNAs: Meta-controllers of gene expression in synaptic activity emerge as genetic and diagnostic markers of human disease
Q41881092Molecular mapping of tumor heterogeneity on clinical tissue specimens with multiplexed quantum dots
Q34348056Multicolor microRNA FISH effectively differentiates tumor types
Q42935075Multiple microRNAs regulate human FOXP2 gene expression by targeting sequences in its 3' untranslated region
Q36643896Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution
Q42592557Multiplexed detection and characterization of rare tumor cells in Hodgkin's lymphoma with multicolor quantum dots
Q35023450Multiplexed miRNA fluorescence in situ hybridization for formalin-fixed paraffin-embedded tissues
Q28744351Neuronal activity regulates hippocampal miRNA expression
Q91236266Non-reversible tissue fixation retains extracellular vesicles for in situ imaging
Q42566308Normal midbrain dopaminergic neuron development and function in miR-133b mutant mice
Q28829032Nucleic Acid Templated Chemical Reaction in a Live Vertebrate
Q40402745Optimized protocol for retinal wholemount preparation for imaging and immunohistochemistry.
Q36375834PDGF-B-mediated downregulation of miR-21: new insights into PDGF signaling in glioblastoma
Q64903283Protection of tissue physicochemical properties using polyfunctional crosslinkers.
Q39368513Quantitative analysis of microRNAs in tissue microarrays by in situ hybridization.
Q57631431Quantitative and multiplex microRNA assays from unprocessed cells in isolated nanoliter well arrays
Q35677744Quantitative assessment of miR34a as an independent prognostic marker in breast cancer
Q50673090RT-qPCR with chimeric dU stem-loop primer is efficient for the detection of bacterial small RNAs.
Q28510360Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132
Q34034660Revealing details: whole mount microRNA in situ hybridization protocol for zebrafish embryos and adult tissues
Q84557762Robust one-day in situ hybridization protocol for detection of microRNAs in paraffin samples using LNA probes
Q48030266SOX9 regulates microRNA miR-202-5p/3p expression during mouse testis differentiation
Q48161854Sensitive whole mount in situ localization of small RNAs in plants.
Q42057217Simultaneous visualization of the subfemtomolar expression of microRNA and microRNA target gene using HILO microscopy.
Q34576000Single cell microRNA analysis using microfluidic flow cytometry
Q35784346Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
Q27011992Small RNA Detection by in Situ Hybridization Methods
Q37461155Small RNA in situ hybridization in Caenorhabditis elegans, combined with RNA-seq, identifies germline-enriched microRNAs
Q33938849Small RNA sequencing and functional characterization reveals MicroRNA-143 tumor suppressor activity in liposarcoma
Q37138610Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis
Q94960300Spatially resolved and multiplexed MicroRNA quantification from tissue using nanoliter well arrays
Q33676275Specificity protein 1 (Sp1) maintains basal epithelial expression of the miR-200 family: implications for epithelial-mesenchymal transition
Q33899783Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
Q36855037The MicroRNA-17-92 cluster enhances axonal outgrowth in embryonic cortical neurons
Q24657924The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo
Q64923974The distinct role of CD73 in the progression of pancreatic cancer.
Q34179483Therapeutic hypothermia alters microRNA responses to traumatic brain injury in rats
Q38691274Timing mechanisms in neuronal pathfinding, synaptic reorganization, and neuronal regeneration
Q35190111Tissue slide-based microRNA characterization of tumors: how detailed could diagnosis become for cancer medicine?
Q57074704Tissue-specific miRNA Expression Profiling in Mouse Heart Sections Using In Situ Hybridization
Q39029842Toehold-initiated rolling circle amplification for visualizing individual microRNAs in situ in single cells
Q35597051Translational study of microRNAs and its application in kidney disease and hypertension research
Q33352351Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice
Q33995527Understanding microRNAs in neurodegeneration
Q34790039Universal stem-loop primer method for screening and quantification of microRNA.
Q37118801Up-regulation of microRNA-142 in simian immunodeficiency virus encephalitis leads to repression of sirtuin1.
Q33867483Use of two novel approaches to discriminate between closely related host microRNAs that are manipulated by Toxoplasma gondii during infection
Q48220830Validation of a microRNA-based qRT-PCR test for accurate identification of tumor tissue origin
Q42914735Whole mount in situ hybridization detection of mRNAs using short LNA containing DNA oligonucleotide probes.
Q35695410ZEB1-associated drug resistance in cancer cells is reversed by the class I HDAC inhibitor mocetinostat.
Q53234100let-7 microRNA regulates neurogliogenesis in the mammalian retina through Hmga2.
Q24337886miR-129-3p controls cilia assembly by regulating CP110 and actin dynamics
Q36725043miR-145 and miR-143 regulate odontoblast differentiation through targeting Klf4 and Osx genes in a feedback loop
Q36806091miR-21 represses Pdcd4 during cardiac valvulogenesis.
Q24619682miR-31 functions as a negative regulator of lymphatic vascular lineage-specific differentiation in vitro and vascular development in vivo
Q24608004miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy
Q28674047miR-9 and miR-140-5p target FoxP2 and are regulated as a function of the social context of singing behavior in zebra finches
Q34324586miR379-410 cluster miRNAs regulate neurogenesis and neuronal migration by fine-tuning N-cadherin.
Q38899010miRNA in situ hybridization in circulating tumor cells--MishCTC
Q24628889miRNAs in human cancer
Q35422390microRNA-34c is a novel target to treat dementias

Search more.