Collapse and repair of replication forks in Escherichia coli

scientific article

Collapse and repair of replication forks in Escherichia coli is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1111/J.1365-2958.1995.TB02403.X
P698PubMed publication ID7565099
P5875ResearchGate publication ID15634217

P2093author name stringKuzminov A
P2860cites workThe double-strand-break repair model for recombinationQ28267259
DNA Sequence and Analysis of 136 Kilobases of the Escherichia coli Genome: Organizational Symmetry around the Origin of ReplicationQ34306353
The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzymeQ34355622
Conjugational recombination in E. coli: myths and mechanismsQ37623662
Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion.Q38315860
Homologous pairing in vitro stimulated by the recombination Hotspot, ChiQ38334215
Transduction versus "Conjuduction": Evidence for Multiple Roles for Exonuclease V in Genetic Recombination in Escherichia coliQ39895818
Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genomeQ40840136
Characterization of DNA adenine methylation mutants of Escherichia coli K12Q41039288
Molecular and functional analysis of the ruv region of Escherichia coli K-12 reveals three genes involved in DNA repair and recombinationQ41866318
Hyper-recombination in dam mutants of Escherichia coli K-12Q42007594
Substrate specificity of the DNA unwinding activity of the RecBC enzyme of Escherichia coliQ44449043
Replication of bacteriophage lambda DNA dependent on the function of host and viral genes. I. Interaction of red, gam and rec.Q45302058
Reverse branch migration of Holliday junctions by RecG protein: a new mechanism for resolution of intermediates in recombination and DNA repair.Q54649605
Discontinuous DNA replication in a lig-7 strain of Escherichia coli is not the result of mismatch repair, nucleotide-excision repair, or the base-excision repair of DNA uracil.Q54721276
Recombination of bacteriophage lambda in recD mutants of Escherichia coli.Q54736666
Formation of a RuvAB-Holliday Junction Complex in VitroQ58028630
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)373-384
P577publication date1995-05-01
P1433published inMolecular MicrobiologyQ6895967
P1476titleCollapse and repair of replication forks in Escherichia coli
P478volume16

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cites work (P2860)
Q48031487A broadening view of recombinational DNA repair in bacteria
Q43879381A dynamic RecA filament permits DNA polymerase-catalyzed extension of the invading strand in recombination intermediates
Q53651010A homozygous recA mutant of Synechocystis PCC6803: construction strategy and characteristics eliciting a novel RecA independent UVC resistance in dark.
Q64387298A new role for Escherichia coli Dam DNA methylase in prevention of aberrant chromosomal replication
Q34585540A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination.
Q73316835A single nuclease active site of the Escherichia coli RecBCD enzyme catalyzes single-stranded DNA degradation in both directions
Q27931070A yeast gene, MGS1, encoding a DNA-dependent AAA(+) ATPase is required to maintain genome stability.
Q35169608AKT1/BRCA1 in the control of homologous recombination and genetic stability: the missing link between hereditary and sporadic breast cancers
Q47848559Abortive recombination in Escherichia coli ruv mutants blocks chromosome partitioning
Q34088211Adaptive mutation in Escherichia coli
Q34603905Adaptive mutation: has the unicorn landed?
Q24623723Adaptive mutation: implications for evolution
Q41073516Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system: stress responses producing genetic change
Q34605521Alteration of N-terminal phosphoesterase signature motifs inactivates Saccharomyces cerevisiae Mre11.
Q33961513An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo
Q33602920Analysis of the SOS response in Salmonella enterica serovar typhimurium using RNA fingerprinting by arbitrarily primed PCR.
Q33778360Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms
Q33527006BRIT1/MCPH1 is essential for mitotic and meiotic recombination DNA repair and maintaining genomic stability in mice
Q89965269Bacillus subtilis RarA Acts as a Positive RecA Accessory Protein
Q57753310Bacillus subtilis RarA modulates replication restart
Q55315209Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection.
Q60921634Biological consequences for bacteria of homologous recombination
Q36845153Borrelia burgdorferi vlsE antigenic variation is not mediated by RecA
Q34037586Break-induced DNA replication
Q27933666Break-induced replication: a review and an example in budding yeast
Q38116136Break-induced replication: functions and molecular mechanism
Q52664387Broken replication forks trigger heritable DNA breaks in the terminus of a circular chromosome.
Q35150239Bypass of a nick by the replisome of bacteriophage T7
Q52190263Cell division is required for resolution of dimer chromosomes at the dif locus of Escherichia coli.
Q39939404Cell-cycle coordination between DNA replication and recombination revealed by a vertebrate N-end rule degron-Rad51.
Q60529742Characteristics of Chi distribution on different bacterial genomes
Q28343741Characterization of homologous recombination induced by replication inhibition in mammalian cells
Q28205315Chromosomal stability and the DNA double-stranded break connection
Q36016450Chromosome demise in the wake of ligase-deficient replication
Q34311628Circles: the replication-recombination-chromosome segregation connection
Q33525506Co-orientation of replication and transcription preserves genome integrity
Q54453203Concerted action of plasmid maintenance functions: partition complexes create a requirement for dimer resolution.
Q64388320Control of crossing over
Q34723611Cooperation of RAD51 and RAD54 in regression of a model replication fork
Q53054701DNA Methylation.
Q34509028DNA Mismatch Repair
Q24643546DNA gyrase, topoisomerase IV, and the 4-quinolones
Q37821754DNA motifs that sculpt the bacterial chromosome.
Q28278869DNA polymerase II (epsilon) of Saccharomyces cerevisiae dissociates from the DNA template by sensing single-stranded DNA
Q24630816DNA replication meets genetic exchange: chromosomal damage and its repair by homologous recombination
Q35037441Defending genome integrity during S-phase: putative roles for RecQ helicases and topoisomerase III.
Q33886806Deletions at stalled replication forks occur by two different pathways
Q47238083Direct observation of end resection by RecBCD during double-stranded DNA break repair in vivo
Q28210616Do bacteria have sex?
Q35188037Double-strand end repair via the RecBC pathway in Escherichia coli primes DNA replication
Q35208627Double-strand-break repair recombination in Escherichia coli: physical evidence for a DNA replication mechanism in vivo
Q92266072Elucidating the functional role of Mycobacterium smegmatis recX in stress response
Q42967681Enhanced deletion formation by aberrant DNA replication in Escherichia coli
Q37585041Enlightenment of yeast mitochondrial homoplasmy: diversified roles of gene conversion
Q34609122Evidence that stationary-phase hypermutation in the Escherichia coli chromosome is promoted by recombination
Q34297067Evolving responsively: adaptive mutation
Q34604021Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae
Q37093000Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled
Q33700686Frail hypotheses in evolutionary biology
Q47968713Functional uncoupling of twin polymerases: mechanism of polymerase dissociation from a lagging-strand block.
Q41713848Genetic instability of the Streptomyces chromosome
Q33967556Genetic requirements for RAD51- and RAD54-independent break-induced replication repair of a chromosomal double-strand break
Q24563143Genome of bacteriophage P1
Q33886793Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation
Q53940315Genomics, Chi sites and codons: 'islands of preferred DNA pairing' are oceans of ORFs.
Q34435844Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease
Q60919860Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways
Q24631768Historical overview: searching for replication help in all of the rec places
Q37574376Holliday junction trap shows how cells use recombination and a junction-guardian role of RecQ helicase
Q27929886Holliday junctions accumulate in replication mutants via a RecA homolog-independent mechanism
Q34308000Homologous Recombination-Experimental Systems, Analysis, and Significance
Q64389088How Acts of Infidelity Promote DNA Break Repair: Collision and Collusion Between DNA Repair and Transcription
Q33635502Human MUS81-EME2 can cleave a variety of DNA structures including intact Holliday junction and nicked duplex
Q33302939Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling
Q35740518Identification of the lactococcal exonuclease/recombinase and its modulation by the putative Chi sequence.
Q33993117Imbalanced base excision repair increases spontaneous mutation and alkylation sensitivity in Escherichia coli
Q34933382Impact of ciprofloxacin exposure on Staphylococcus aureus genomic alterations linked with emergence of rifampin resistance
Q34271071Impairment of lagging strand synthesis triggers the formation of a RuvABC substrate at replication forks
Q33714636In vivo evidence for a recA-independent recombination process in Escherichia coli that permits completion of replication of DNA containing UV damage in both strands
Q43993843Inactivation of Mre11 does not affect VSG gene duplication mediated by homologous recombination in Trypanosoma brucei.
Q48300492Inactivation of genes involved in base excision repair of Corynebacterium glutamicum and survival of the mutants in presence of various mutagens
Q53052801Increased ultraviolet radiation sensitivity of Escherichia coli grown at low temperature.
Q39694895Induction of a DNA nickase in the presence of its target site stimulates adaptive mutation in Escherichia coli.
Q39845234Influence of disruption of the recA gene on genetic instability and genome rearrangement in Streptomyces lividans
Q28141289Initiation of genetic recombination and recombination-dependent replication
Q24548334Interaction of human rad51 recombination protein with single-stranded DNA binding protein, RPA
Q35738776Interplay between DNA replication, recombination and repair based on the structure of RecG helicase
Q39729394Isolation and characterization of the C-terminal nuclease domain from the RecB protein of Escherichia coli
Q38257014Linking RNA polymerase backtracking to genome instability in E. coli
Q30412742Mechanisms for Structural Variation in the Human Genome
Q22065788Mechanisms of gene duplication and amplification
Q37586957Mechanisms of mutagenesis: DNA replication in the presence of DNA damage
Q33692291Mechanisms of mutation in nondividing cells. Insights from the study of adaptive mutation in Escherichia coli
Q59198308Mechanisms of regulation of eukaryotic homologous DNA recombination
Q33847662Mechanisms of stationary phase mutation: a decade of adaptive mutation
Q92083775Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2.
Q42110225Meiotic deletion at the BUF1 locus of the fungus Magnaporthe grisea is controlled by interaction with the homologous chromosome
Q27932674Migrating bubble during break-induced replication drives conservative DNA synthesis
Q35190848Mismatch repair protein MutL becomes limiting during stationary-phase mutation
Q39843576Modulation of recombination and DNA repair by the RecG and PriA helicases of Escherichia coli K-12.
Q36268081Multiple pathways of duplication formation with and without recombination (RecA) in Salmonella enterica.
Q35870700Multiple pathways process stalled replication forks
Q35869358Mutation as a stress response and the regulation of evolvability
Q42524559Mutations in the yeast SRB2 general transcription factor suppress hpr1-induced recombination and show defects in DNA repair
Q36254839New insights into the kinetic resistance to anticancer agents
Q28610023Nuclear foci of mammalian recombination proteins are located at single-stranded DNA regions formed after DNA damage
Q33966750Opposing roles of the holliday junction processing systems of Escherichia coli in recombination-dependent adaptive mutation
Q30499016Oxidative stress resistance in Deinococcus radiodurans
Q47558874Oxygen and RNA in stress-induced mutation.
Q42557010Palindromes as substrates for multiple pathways of recombination in Escherichia coli
Q39958831Partial suppression of the fission yeast rqh1(-) phenotype by expression of a bacterial Holliday junction resolvase
Q42283278Pathways for Homologous Recombination Between Chromosomal Direct Repeats in Salmonella typhimurium
Q46724332Patterns of chromosomal fragmentation due to uracil-DNA incorporation reveal a novel mechanism of replication-dependent double-stranded breaks
Q47673536Phenotypes of dnaXE145A Mutant Cells Indicate that the Escherichia coli Clamp Loader Has a Role in the Restart of Stalled Replication Forks.
Q39432621Precarious maintenance of simple DNA repeats in eukaryotes
Q33938191PriA and phage T4 gp59: factors that promote DNA replication on forked DNA substrates microreview
Q64387578PriA mediates DNA replication pathway choice at recombination intermediates
Q73329368Progressive loss of lambda prophage recombinogenicity in UV-irradiated Escherichia coli: the role of RecBCD enzyme
Q40587137Promoting and avoiding recombination: contrasting activities of the Escherichia coli RuvABC Holliday junction resolvase and RecG DNA translocase
Q36853184Prompt repair of hydrogen peroxide-induced DNA lesions prevents catastrophic chromosomal fragmentation
Q44837014Purification and characterization of DnaC810, a primosomal protein capable of bypassing PriA function
Q37025967R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli
Q35583008RecA-Dependent Recovery of Arrested DNA Replication Forks
Q37621630RecA-dependent mutants in Escherichia coli reveal strategies to avoid chromosomal fragmentation.
Q41982811RecA-dependent replication in the nrdA101(Ts) mutant of Escherichia coli under restrictive conditions
Q39527474RecA-mediated rescue of Escherichia coli strains with replication forks arrested at the terminus
Q24650931RecBCD enzyme and the repair of double-stranded DNA breaks
Q35908909RecBCD is required to complete chromosomal replication: Implications for double-strand break frequencies and repair mechanisms
Q39728517RecG helicase activity at three- and four-strand DNA structures.
Q42410405RecG protein and single-strand DNA exonucleases avoid cell lethality associated with PriA helicase activity in Escherichia coli
Q34108141Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans.
Q42046114Recombination enhancement by replication (RER) in Rhizobium etli.
Q39498597Recombination is essential for viability of an Escherichia coli dam (DNA adenine methyltransferase) mutant
Q33858878Recombination phenotypes of Escherichia coli greA mutants
Q41984467Recombination-dependent growth in exonuclease-depleted recBC sbcBC strains of Escherichia coli K-12.
Q64387300Recombinational DNA repair in a cellular context: a search for the homology search
Q33962242Recombinational repair and restart of damaged replication forks.
Q29619755Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
Q43725800Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease
Q46145277Reconstitution of an SOS response pathway: derepression of transcription in response to DNA breaks
Q37214505Reduced lipopolysaccharide phosphorylation in Escherichia coli lowers the elevated ori/ter ratio in seqA mutants
Q39758873Repair and antirepair DNA helicases in Helicobacter pylori
Q57753866Replication Fork Breakage and Restart in Escherichia coli
Q43910861Replication arrests during a single round of replication of the Escherichia coli chromosome in the absence of DnaC activity
Q33885416Replication fork arrest and DNA recombination
Q34089698Replication fork collapse at replication terminator sequences
Q33835816Replication fork inhibition in seqA mutants of Escherichia coli triggers replication fork breakage
Q35839032Replication forks stalled at ultraviolet lesions are rescued via RecA and RuvABC protein-catalyzed disintegration in Escherichia coli
Q34311622Rescue of arrested replication forks by homologous recombination
Q34470485Roles of E. coli double-strand-break-repair proteins in stress-induced mutation
Q42094982Roles of ExoI and SbcCD nucleases in "reckless" DNA degradation in recA mutants of Escherichia coli
Q77550034RuvAB acts at arrested replication forks
Q30008790SSB and the RecG DNA helicase: an intimate association to rescue a stalled replication fork
Q33326797SSB antagonizes RecX-RecA interaction
Q74297494Saccharomyces cerevisiae lacking Snm1, Rev3 or Rad51 have a normal S-phase but arrest permanently in G2 after cisplatin treatment
Q53627728Selection for chromosome architecture in bacteria.
Q34119281Separate DNA Pol II- and Pol IV-dependent pathways of stress-induced mutation during double-strand-break repair in Escherichia coli are controlled by RpoS.
Q37093293Single-strand interruptions in replicating chromosomes cause double-strand breaks
Q33743436Sister chromatid exchange frequencies in Escherichia coli analyzed by recombination at the dif resolvase site.
Q61799278Spatial and temporal organization of RecA in the DNA-damage response
Q39494346Specific effects of a recB mutation on the HfrH strain of Escherichia coli.
Q37352792Specificity in suppression of SOS expression by recA4162 and uvrD303.
Q39844324Stability of linear DNA in recA mutant Escherichia coli cells reflects ongoing chromosomal DNA degradation
Q36574251Stable DNA replication: interplay between DNA replication, homologous recombination, and transcription
Q40459862Stress-Induced Mutagenesis.
Q27635329Structural analysis of DNA replication fork reversal by RecG
Q46200700Suppression of spontaneous chromosomal rearrangements by S phase checkpoint functions in Saccharomyces cerevisiae
Q58732442The ATPase activity of E. coli RecA prevents accumulation of toxic complexes formed by erroneous binding to undamaged double stranded DNA
Q46027925The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation.
Q33960277The Mre11-Rad50-Xrs2 protein complex facilitates homologous recombination-based double-strand break repair in Saccharomyces cerevisiae
Q35193453The RecBC enzyme loads RecA protein onto ssDNA asymmetrically and independently of chi, resulting in constitutive recombination activation
Q39679859The RuvABC resolvase is indispensable for recombinational repair in sbcB15 mutants of Escherichia coli
Q44267647The S. cerevisiae Mag1 3-methyladenine DNA glycosylase modulates susceptibility to homologous recombination.
Q34491677The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli
Q33903483The SOS response regulates adaptive mutation
Q27935475The Saccharomyces cerevisiae RAD9, RAD17, RAD24 and MEC3 genes are required for tolerating irreparable, ultraviolet-induced DNA damage
Q34748884The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
Q24630851The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA
Q33867563The breast cancer susceptibility gene, BRCA2: at the crossroads between DNA replication and recombination?
Q26859022The chromosome cycle of prokaryotes
Q27860542The complete genome sequence of Escherichia coli K-12
Q29614220The importance of repairing stalled replication forks
Q31497967The intrinsically unstable life of DNA triplet repeats associated with human hereditary disorders
Q42637285The mutT defect does not elevate chromosomal fragmentation in Escherichia coli because of the surprisingly low levels of MutM/MutY-recognized DNA modifications
Q41728146The nuclease activity of the yeast DNA2 protein, which is related to the RecB-like nucleases, is essential in vivo
Q52927782The orientation bias of Chi sequences is a general tendency of G-rich oligomers.
Q33347783The role of the Fanconi anemia network in the response to DNA replication stress
Q34017416The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli
Q42550654The transcription factor DksA prevents conflicts between DNA replication and transcription machinery
Q41924740The transcription fidelity factor GreA impedes DNA break repair
Q34433258The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner
Q47955222Thermostable flap endonuclease from the archaeon, Pyrococcus horikoshii, cleaves the replication fork-like structure endo/exonucleolytically
Q40423760Tn7 recognizes transposition target structures associated with DNA replication using the DNA-binding protein TnsE.
Q64388355Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminates
Q64387291Tools To Live By: Bacterial DNA Structures Illuminate Cancer
Q42430219Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation
Q39500237Transcriptional and mutational analyses of the Streptomyces lividans recX gene and its interference with RecA activity
Q34603730Transient and heritable mutators in adaptive evolution in the lab and in nature
Q37398739Trapping and breaking of in vivo nicked DNA during pulsed field gel electrophoresis
Q36186742Travel, sex, and food: what's speciation got to do with it?
Q33966542Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli.
Q36713351Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli
Q34612124Two types of recombination hotspots in bacteriophage T4: one requires DNA damage and a replication origin and the other does not.
Q33984271Tying up loose ends: nonhomologous end-joining in Saccharomyces cerevisiae
Q33995863Viability of rep recA mutants depends on their capacity to cope with spontaneous oxidative damage and on the DnaK chaperone protein
Q33993510Visualization of repair of double-strand breaks in the bacteriophage T7 genome without normal DNA replication
Q37976150What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli?
Q41352428When checkpoints fail
Q74825051Yeast ARMs (DNA at-risk motifs) can reveal sources of genome instability

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