Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria

scientific article published on 17 July 2017

Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.12688/F1000RESEARCH.11905.1
P932PMC publication ID5580409
P698PubMed publication ID28928948

P50authorSereina RinikerQ24013775
Anang A. ShelatQ56223986
Gregory A. LandrumQ42716526
Floriane MontanariQ43370852
P2093author name stringW Patrick Walters
Johanna M Jansen
Julie Maier
Santiago D Villalba
P2860cites workReview of the clinical pharmacokinetics of artesunate and its active metabolite dihydroartemisinin following intravenous, intramuscular, oral or rectal administrationQ21034080
Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival ForestsQ22673963
Thousands of chemical starting points for antimalarial lead identificationQ24289329
Global phenotypic screening for antimalarialsQ26824875
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Antimalarial drug discovery - approaches and progress towards new medicines.Q27693245
Human malaria parasites in continuous cultureQ28131626
A Teach-Discover-Treat Application of ZincPharmer: An Online Interactive Pharmacophore Modeling and Virtual Screening ToolQ28547139
Open-source platform to benchmark fingerprints for ligand-based virtual screeningQ28681290
New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassaysQ29615588
Prediction of biological activity for high-throughput screening using binary kernel discrimination.Q52053492
Stacked generalizationQ56058040
Extremely randomized treesQ56221779
Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data SetsQ56337260
Treatment and Prevention of MalariaQ58828673
Extended-connectivity fingerprintsQ29616639
Chemical genetics of Plasmodium falciparumQ29617272
Teach-Discover-Treat (TDT): collaborative computational drug discovery for neglected diseasesQ30485753
New methods for ligand-based virtual screening: use of data fusion and machine learning to enhance the effectiveness of similarity searchingQ31035059
Molecular similarity: a key technique in molecular informaticsQ31126264
Streamlining lead discovery by aligning in silico and high-throughput screeningQ33248993
How similar are those molecules after all? Use two descriptors and you will have three different answersQ34347842
Why do we need so many chemical similarity search methods?Q35053182
Designing screens: how to make your hits a hit.Q35096198
The origins of antimalarial drug resistanceQ35911992
There is no such thing as 'diversity'!Q36153682
Antimalarial drug resistance: a review of the biology and strategies to delay emergence and spreadQ36722524
Antimalarial drug discovery - the path towards eradication.Q37449662
Performance of machine learning methods for ligand-based virtual screeningQ37481577
Back to the future: lessons learned in modern target-based and whole-cell lead optimization of antimalarials.Q37975527
Malaria medicines: a glass half full?Q38497838
Simple and inexpensive fluorescence-based technique for high-throughput antimalarial drug screening.Q40815903
The properties of known drugs. 1. Molecular frameworksQ40933327
Heterogeneous classifier fusion for ligand-based virtual screening: or, how decision making by committee can be a good thing.Q45958380
Support-vector-machine-based ranking significantly improves the effectiveness of similarity searching using 2D fingerprints and multiple reference compoundsQ47243773
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesNumPyQ197520
scikit-learnQ1026367
Jupyter notebook fileQ70357595
P921main subjectmalariaQ12156
workflowQ627335
P304page(s)1136
P577publication date2017-07-17
P1433published inF1000ResearchQ27701587
P1476titleVirtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
P478volume6

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cites work (P2860)
Q500294983D-e-Chem: Structural Cheminformatics Workflows for Computer-Aided Drug Discovery.
Q94506762Identification of novel antiplasmodial compound by hierarquical virtual screening and in vitro assays
Q50013783Optimal Design of Experiments by Combining Coarse and Fine Measurements.
Q64067149TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
Q94335553Towards reproducible computational drug discovery
Q92657309Virtual Screening Techniques in Drug Discovery: Review and Recent Applications

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