TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data

scientific article published on 08 April 2019

TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/jcheminf/SydowMDV19
P6179Dimensions Publication ID1113301019
P356DOI10.1186/S13321-019-0351-X
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s13321-019-0351-x
P932PMC publication ID6454689
P698PubMed publication ID30963287

P50authorAndrea VolkamerQ50731316
Dominique SydowQ59668391
Andrea MorgerQ86834181
Maximilian DrillerQ92959286
P2093author name stringMaximilian Driller
Andrea Morger
P2860cites workMatplotlib: A 2D Graphics EnvironmentQ17278583
DrugBank: a comprehensive resource for in silico drug discovery and explorationQ24188653
The Protein Data BankQ24515306
The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and BioinformaticsQ27061829
Recent Developments of the Chemistry Development Kit (CDK) - An Open-Source Java Library for Chemo- and BioinformaticsQ27065423
The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)Q27653890
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settingsQ27861111
FMCS: a novel algorithm for the multiple MCS problemQ27885304
PubChem Substance and Compound databasesQ27942588
ChEMBL: a large-scale bioactivity database for drug discoveryQ28315179
Open source molecular modelingQ28598346
ChEMBL web services: streamlining access to drug discovery data and utilitiesQ28647641
The Generation of a Unique Machine Description for Chemical Structures-A Technique Developed at Chemical Abstracts ServiceQ28837925
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settingsQ28842973
New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassaysQ29615588
Extended-connectivity fingerprintsQ29616639
Efficient ring perception for the Chemistry Development KitQ30149545
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searchingQ30149558
Teach-Discover-Treat (TDT): collaborative computational drug discovery for neglected diseasesQ30485753
PyPDB: a Python API for the Protein Data BankQ30993527
Molecular similarity: a key technique in molecular informaticsQ31126264
Lessons learnt from assembling screening libraries for drug discovery for neglected diseasesQ33309109
Maximum common subgraph isomorphism algorithms for the matching of chemical structuresQ35037939
Representation and identification of activity cliffsQ38689897
Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malariaQ41588963
Editorial: Artificial Neural Networks as Models of Neural Information ProcessingQ47383057
Glossary of terms used in medicinal chemistry (IUPAC Recommendations 1998)Q54260077
Molecular similarity in medicinal chemistry.Q54708065
Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General PublicQ56879557
The NumPy Array: A Structure for Efficient Numerical ComputationQ57317251
Impact of Binding Site Comparisons on Medicinal Chemistry and Rational Molecular DesignQ62835023
Perceptual insensitivity to higher-order statistical moments of coherent random dot motionQ90367051
Expression and Function of the Epidermal Growth Factor Receptor in Physiology and DiseaseQ100409369
Data Structures for Statistical Computing in PythonQ104437798
BioPandas: Working with molecular structures in pandas DataFramesQ113308259
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesNumPyQ197520
scikit-learnQ1026367
Jupyter notebook fileQ70357595
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectopen-source softwareQ1130645
RDKitQ54152347
P304page(s)29
P577publication date2019-04-08
P1433published inJournal of CheminformaticsQ6294930
P1476titleTeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
P478volume11

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cites work (P2860)
Q115009487An open-source molecular builder and free energy preparation workflow
Q115010874Molecular Docking with Open Access Software: Development of an Online Laboratory Handbook and Remote Workflow for Chemistry and Pharmacy Master’s Students to Undertake Computer-Aided Drug Design
Q113274660TeachOpenCADD 2022: open source and FAIR Python pipelines to assist in structural bioinformatics and cheminformatics research
Q90710291TeachOpenCADD-KNIME: A Teaching Platform for Computer-Aided Drug Design Using KNIME Workflows
Q111900256Teaching of Biopharmaceutics in a Drug Design Course: Use of GastroPlus as Educational Software
Q94335553Towards reproducible computational drug discovery
Q114061419Using Jupyter Notebooks for re-training machine learning models
Q90428394Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace

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