Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

scientific article published on 20 April 2011

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S00425-011-1410-3
P698PubMed publication ID21505864

P50authorJian-Fei KuangQ83388040
P2093author name stringLei Chen
Wang-jin Lu
Jian-guo Li
Hai-ying Zhong
Jian-ye Chen
Jian-fei Kuang
P2860cites workExpression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger dropQ37193289
How to do successful gene expression analysis using real-time PCR.Q37647080
Cloning of an ADP-ribosylation factor gene from banana (Musa acuminata) and its expression patterns in postharvest ripening fruitQ39577203
Genome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisQ40388663
Silencing Sl-EBF1 and Sl-EBF2 expression causes constitutive ethylene response phenotype, accelerated plant senescence, and fruit ripening in tomatoQ42639243
Molecular characterization and differential expression of beta-1,3-glucanase during ripening in banana fruit in response to ethylene, auxin, ABA, wounding, cold and light-dark cyclesQ43063768
Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumberQ43224029
Evaluation of candidate reference genes for expression studies in Pisum sativum under different experimental conditionsQ44146853
Normalization of reverse transcription quantitative-PCR with housekeeping genes in riceQ44694694
A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).Q46038299
EIN3-like gene expression during fruit ripening of Cavendish banana (Musa acuminata cv. Grande naine).Q46697440
Role of phenylalanine ammonia-lyase in heat pretreatment-induced chilling tolerance in banana fruitQ46753434
Differential feedback regulation of ethylene biosynthesis in pulp and peel tissues of banana fruitQ48082668
The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants.Q51887823
Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations.Q51892953
Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress.Q51916986
Ethylene-induced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in Arabidopsis.Q52602278
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genesQ24534395
Validating internal controls for quantitative plant gene expression studiesQ24804305
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experimentsQ28236560
Guideline to reference gene selection for quantitative real-time PCRQ28237161
Quantification of mRNA using real-time RT-PCRQ28296375
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlationsQ29304271
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data setsQ29615465
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR dataQ29616810
Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR dataQ30000967
Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR.Q30851279
An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry developmentQ33263600
Validation of internal control for gene expression study in soybean by quantitative real-time PCR.Q33345926
Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosusQ33360989
Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development processQ33395091
Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditionsQ33397852
Identification and validation of reference genes for quantitative RT-PCR normalization in wheatQ33411039
Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizanthaQ33477648
Selection of reliable reference genes for gene expression studies in peach using real-time PCRQ33484407
Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.Q33507167
Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybridaQ33522477
Validation of reference genes for quantitative RT-PCR studies of gene expression in perennial ryegrass (Lolium perenne L.)Q33525408
Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR.Q33531347
The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethyleneQ33722398
Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems.Q34146463
Real-time PCR for mRNA quantitationQ34439106
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.Q34524574
Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stressQ34561245
Post-analysis follow-up and validation of microarray experimentsQ35010180
Real-time RT-PCR normalisation; strategies and considerations.Q36091282
P433issue2
P304page(s)377-390
P577publication date2011-04-20
P1433published inPlantaQ15762724
P1476titleValidation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions
P478volume234

Reverse relations

cites work (P2860)
Q21261986A banana aquaporin gene, MaPIP1;1, is involved in tolerance to drought and salt stresses
Q47829419A comprehensive investigation of starch degradation process and identification of a transcriptional activator MabHLH6 during banana fruit ripening.
Q42675852A ripening-induced transcription factor MaBSD1 interacts with promoters of MaEXP1/2 from banana fruit.
Q37147031Assessment of Suitable Reference Genes for Quantitative Gene Expression Studies in Melon Fruits
Q38613610Automated identification of reference genes based on RNA-seq data.
Q90007605Banana MaBZR1/2 associate with MaMPK14 to modulate cell wall modifying genes during fruit ripening
Q48227096Banana Transcription Factor MaERF11 Recruits Histone Deacetylase MaHDA1 and Represses the Expression of MaACO1 and Expansins during Fruit Ripening
Q36845356Banana ethylene response factors are involved in fruit ripening through their interactions with ethylene biosynthesis genes
Q41191104Banana fruit NAC transcription factor MaNAC5 cooperates with MaWRKYs to enhance the expression of pathogenesis-related genes against Colletotrichum musae.
Q36719595Banana fruit VQ motif-containing protein5 represses cold-responsive transcription factor MaWRKY26 involved in the regulation of JA biosynthetic genes
Q37286556Characteristics of Three Thioredoxin Genes and Their Role in Chilling Tolerance of Harvested Banana Fruit
Q103804434Characteristics of banana B genome MADS-box family demonstrate their roles in fruit development, ripening, and stress
Q44376684Characterization of two monoterpene synthases involved in floral scent formation in Hedychium coronarium
Q41903512Cloning and evaluation of reference genes for quantitative real-time PCR analysis in Amorphophallus
Q37657611Comparative physiological and transcriptomic analyses provide integrated insight into osmotic, cold, and salt stress tolerance mechanisms in banana
Q35167867Comprehensive selection of reference genes for gene expression normalization in sugarcane by real time quantitative rt-PCR.
Q41253800Constitutive and stress-inducible overexpression of a native aquaporin gene (MusaPIP2;6) in transgenic banana plants signals its pivotal role in salt tolerance
Q64118884Different Hydrophobins of Are Involved in Hyphal Growth, Attachment, Water-Air Interface Penetration and Plant Infection
Q30394822Differential proteome analysis during early somatic embryogenesis in Musa spp. AAA cv. Grand Naine
Q35674039Evaluation of Appropriate Reference Genes for Gene Expression Normalization during Watermelon Fruit Development
Q31097578Evaluation of Sorghum [Sorghum bicolor (L.)] Reference Genes in Various Tissues and under Abiotic Stress Conditions for Quantitative Real-Time PCR Data Normalization
Q34273769Evaluation of candidate reference genes for gene expression normalization in Brassica juncea using real time quantitative RT-PCR.
Q39195713Evaluation of internal control for gene expression in Phalaenopsis by quantitative real-time PCR.
Q34406685Evaluation of new reference genes in papaya for accurate transcript normalization under different experimental conditions
Q34348305Evaluation of qPCR reference genes in two genotypes of Populus for use in photoperiod and low-temperature studies
Q41886142Evaluation of reference genes for accurate normalization of gene expression for real time-quantitative PCR in Pyrus pyrifolia using different tissue samples and seasonal conditions.
Q55437204Evaluation of suitable reference genes for qRT-PCR normalization in strawberry (Fragaria × ananassa) under different experimental conditions.
Q35999639Expression Stabilities of Candidate Reference Genes for RT-qPCR in Chinese Jujube (Ziziphus jujuba Mill.) under a Variety of Conditions
Q42645275Expression profiles of a banana fruit linker histone H1 gene MaHIS1 and its interaction with a WRKY transcription factor
Q33918617Flowering time in banana (Musa spp.), a day neutral plant, is controlled by at least three FLOWERING LOCUS T homologues.
Q92813284Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Q36088735Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana
Q30316238Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR Analyses
Q37273399Genome-Wide Identification, Phylogeny, and Expression Analyses of the 14-3-3 Family Reveal Their Involvement in the Development, Ripening, and Abiotic Stress Response in Banana
Q37117613Genome-wide analyses of the bZIP family reveal their involvement in the development, ripening and abiotic stress response in banana
Q33799567Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
Q89567654Genome-wide identification and characterization of the CKII gene family in the cultivated banana cultivar (Musa spp. cv Tianbaojiao) and the wild banana (Musa itinerans)
Q35815282Genome-wide identification and characterization of the superoxide dismutase gene family in Musa acuminata cv. Tianbaojiao (AAA group).
Q92565062Identification and Evaluation of Reference Genes for Normalization of Gene Expression in Developmental Stages, Sexes, and Tissues of Diaphania caesalis (Lepidoptera, Pyralidae)
Q36989974Identification and Validation of Reference Genes for RT-qPCR Analysis in Non-Heading Chinese Cabbage Flowers
Q36985587Identification and Validation of Reference Genes for qRT-PCR Studies of Gene Expression in Dioscorea opposita
Q34834170Identification and evaluation of reliable reference genes for quantitative real-time PCR analysis in tea plant (Camellia sinensis (L.) O. Kuntze)
Q35165463Identification and validation of reference genes for quantitative real-time PCR normalization and its applications in lycium
Q34935432Identification and validation of reference genes for transcript normalization in strawberry (Fragaria × ananassa) defense responses.
Q90241771Identification of Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4) responsive miRNAs in banana root
Q92015930Identification of early fruit development reference genes in plum
Q35133421Identification of internal reference genes for gene expression normalization between the two sexes in dioecious white Campion
Q35805109Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing
Q34999688Identification of reference genes for qRT-PCR analysis in Yesso scallop Patinopecten yessoensis
Q38923888Identification of suitable qPCR reference genes in leaves of Brassica oleracea under abiotic stresses
Q51275990Identification of the valid reference genes for quantitative RT-PCR in annual ryegrass (Lolium multiflorum) under salt stress.
Q46575281Induction of jasmonate signalling regulators MaMYC2s and their physical interactions with MaICE1 in methyl jasmonate-induced chilling tolerance in banana fruit
Q36846875Molecular Characterization of MaCCS, a Novel Copper Chaperone Gene Involved in Abiotic and Hormonal Stress Responses in Musa acuminata cv. Tianbaojiao
Q36823519Molecular characterization of CONSTANS-Like (COL) genes in banana (Musa acuminata L. AAA Group, cv. Grand Nain).
Q36199670Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening
Q46444631Molecular characterization of cold-responsive basic helix-loop-helix transcription factors MabHLHs that interact with MaICE1 in banana fruit.
Q39577697Molecular cloning and expression of five glutathione S-transferase (GST) genes from Banana (Musa acuminata L. AAA group, cv. Cavendish).
Q39454831MusaDHN-1, a novel multiple stress-inducible SK(3)-type dehydrin gene, contributes affirmatively to drought- and salt-stress tolerance in banana
Q39484100MusaSAP1, a A20/AN1 zinc finger gene from banana functions as a positive regulator in different stress responses
Q35014468MusaWRKY71 overexpression in banana plants leads to altered abiotic and biotic stress responses
Q45407080Nitrogen starvation, salt and heat stress in coffee (Coffea arabica L.): identification and validation of new genes for qPCR normalization
Q44079543Normalizing gene expression by quantitative PCR during somatic embryogenesis in two representative conifer species: Pinus pinaster and Picea abies.
Q91762188Overexpression of Banana ATG8f Modulates Drought Stress Resistance in Arabidopsis
Q99635665Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans
Q42377279Pectin methylesterases contribute the pathogenic differences between races 1 and 4 of Fusarium oxysporum f. sp. cubense
Q90245941Proteomic analysis of somatic embryo development in Musa spp. cv. Grand Naine (AAA)
Q34459179Quantitative RT-PCR analysis of differentially expressed genes in Quercus suber in response to Phytophthora cinnamomi infection.
Q38906210RT-qPCR demonstrates light-dependent AtRBCS1A and AtRBCS3B mRNA expressions in Arabidopsis thaliana leaves
Q37549435RT-qPCR normalization genes in the red alga Chondrus crispus.
Q39266651Reference gene selection for qRT-PCR in Caragana korshinskii Kom. under different stress conditions
Q51243250Reference gene selection for quantitative real-time RT-PCR normalization in Iris. lactea var. chinensis roots under cadmium, lead, and salt stress conditions.
Q36096920Reference gene selection in the desert plant Eremosparton songoricum
Q36357915Reliable reference genes for normalization of gene expression data in tea plants (Camellia sinensis) exposed to metal stresses
Q64267957Sampling for DUS Test of Flower Colors of L. in View of Spatial and Temporal Changes of Flower Colorations, Anthocyanin Contents, and Gene Expression Levels
Q36107810Screening Reliable Reference Genes for RT-qPCR Analysis of Gene Expression in Moringa oleifera
Q55480261Selection and Validation of Reference Genes for mRNA Expression by Quantitative Real-Time PCR Analysis in Neolamarckia cadamba.
Q37057205Selection and Verification of Candidate Reference Genes for Mature MicroRNA Expression by Quantitative RT-PCR in the Tea Plant (Camellia sinensis).
Q51350629Selection and evaluation of reference genes for expression analysis of Cassi.
Q54944670Selection and evaluation of reference genes for qRT-PCR analysis in Euscaphis konishii Hayata based on transcriptome data.
Q92967250Selection and validation of reference genes for gene expression studies in Pseudomonas brassicacearum GS20 using real-time quantitative reverse transcription PCR
Q36639316Selection and validation of reference genes for normalization of quantitative real-time reverse transcription PCR analysis in Poria cocos (Schw.) Wolf (Fuling).
Q33354441Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa
Q34296839Selection and validation of reference genes for studying stress-related agarwood formation of Aquilaria sinensis
Q40908878Selection and validation of reliable reference genes in Gossypium raimondii
Q61453546Selection of Reference Genes for qRT-PCR Analysis in after Hot-Air Drying
Q36101411Selection of Suitable Reference Genes for RT-qPCR Normalization under Abiotic Stresses and Hormone Stimulation in Persimmon (Diospyros kaki Thunb).
Q98178537Selection of Suitable Reference Genes for qPCR Gene Expression Analysis of HepG2 and L02 in Four Different Liver Cell Injured Models
Q38915496Selection of candidate reference genes for real-time PCR studies in lettuce under abiotic stresses.
Q36158040Selection of reliable reference genes for quantitative real-time PCR gene expression analysis in Jute (Corchorus capsularis) under stress treatments
Q50723467Selection of reliable reference genes for quantitative real-time polymerase chain reaction studies in maize grains.
Q36104498Selection of suitable reference genes for quantitative RT-PCR normalization in the halophyte Halostachys caspica under salt and drought stress
Q61808456Selection of the optimal reference genes for expression analyses in different materials of
Q34516767Stable internal reference genes for the normalization of real-time PCR in different sweetpotato cultivars subjected to abiotic stress conditions
Q90640492Stable reference genes for RT-qPCR analysis of gene expression in the Musa acuminata-Pseudocercospora musae interaction
Q33785830The Banana Fruit SINA Ubiquitin Ligase MaSINA1 Regulates the Stability of MaICE1 to be Negatively Involved in Cold Stress Response
Q37080973The Banana Transcriptional Repressor MaDEAR1 Negatively Regulates Cell Wall-Modifying Genes Involved in Fruit Ripening
Q90420009The Involvement of the Banana F-Box Protein MaEBF1 in Regulating Chilling-Inhibited Starch Degradation through Interaction with a MaNAC67-Like Protein
Q33682539The MAPKKK and MAPKK gene families in banana: identification, phylogeny and expression during development, ripening and abiotic stress
Q36733440The banana fruit Dof transcription factor MaDof23 acts as a repressor and interacts with MaERF9 in regulating ripening-related genes
Q39043617The transcriptional regulatory network mediated by banana (Musa acuminata) dehydration-responsive element binding (MaDREB) transcription factors in fruit ripening
Q35004828Transcriptome and expression profile analysis of highly resistant and susceptible banana roots challenged with Fusarium oxysporum f. sp. cubense tropical race 4
Q64937451Transcriptomic analysis of resistant and susceptible banana corms in response to infection by Fusarium oxysporum f. sp. cubense tropical race 4.
Q39484094Transgenic banana plants overexpressing a native plasma membrane aquaporin MusaPIP1;2 display high tolerance levels to different abiotic stresses
Q36964552Validation of Reference Genes for RT-qPCR Studies of Gene Expression in Preharvest and Postharvest Longan Fruits under Different Experimental Conditions
Q33690034Validation of Suitable Reference Genes for RT-qPCR Data in Achyranthes bidentata Blume under Different Experimental Conditions
Q35165453Validation of potential reference genes for qPCR in maize across abiotic stresses, hormone treatments, and tissue types
Q61805436Validation of reference genes for gene expression studies in post-harvest leaves of tea plant ()
Q91908823Validation of reference genes for qRT-PCR data normalisation in lentil (Lens culinaris) under leaf developmental stages and abiotic stresses
Q38529832Validation of reference genes for quantitative RT-PCR normalization in Suaeda aralocaspica, an annual halophyte with heteromorphism and C4 pathway without Kranz anatomy
Q34612380Validation of reference genes in Solenopsis invicta in different developmental stages, castes and tissues
Q39607537Validation of suitable reference genes for gene expression analysis in the halophyte Salicornia europaea by real-time quantitative PCR.
Q36182818Whole-Transcriptome Selection and Evaluation of Internal Reference Genes for Expression Analysis in Protocorm Development of Dendrobium officinale Kimura et Migo
Q28821529Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

Search more.