Validating internal controls for quantitative plant gene expression studies

scientific article

Validating internal controls for quantitative plant gene expression studies is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1024680665
P356DOI10.1186/1471-2229-4-14
P3181OpenCitations bibliographic resource ID404718
P932PMC publication ID515301
P698PubMed publication ID15317655
P5875ResearchGate publication ID8393269

P50authorIgor YakovlevQ52295970
P2093author name stringAmy M Brunner
Steven H Strauss
P2860cites workStatistical tests for differential expression in cDNA microarray experimentsQ21194873
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Expression stability of six housekeeping genes: A proposal for resistance gene quantification studies of Pseudomonas aeruginosa by real-time quantitative RT-PCR.Q38355163
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Quantification of human Aiolos splice variants by real-time PCR.Q44225397
Quantification of multiple mRNA levels in rat brain regions using real time optical PCR.Q44387198
Optimization of quantitative real-time RT-PCR parameters for the study of lymphoid malignanciesQ44394901
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P433issue1
P407language of work or nameEnglishQ1860
P304page(s)14
P577publication date2004-08-18
P1433published inBMC Plant BiologyQ15760766
P1476titleValidating internal controls for quantitative plant gene expression studies
P478volume4

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Q46611215Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis.
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Q91831164Evaluation of internal control genes for quantitative realtime PCR analyses for studying fruit development of dwarf tomato cultivar 'Micro-Tom'
Q34406685Evaluation of new reference genes in papaya for accurate transcript normalization under different experimental conditions
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Q33507167Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR.
Q34348305Evaluation of qPCR reference genes in two genotypes of Populus for use in photoperiod and low-temperature studies
Q34948325Evaluation of reference genes for RT qPCR analyses of structure-specific and hormone regulated gene expression in Physcomitrella patens gametophytes
Q34847484Evaluation of reference genes for RT-qPCR expression studies in hop (Humulus lupulus L.) during infection with vascular pathogen verticillium albo-atrum
Q41886142Evaluation of reference genes for accurate normalization of gene expression for real time-quantitative PCR in Pyrus pyrifolia using different tissue samples and seasonal conditions.
Q33754378Evaluation of reference genes for quantitative real-time PCR in oil palm elite planting materials propagated by tissue culture
Q34322237Evaluation of reference genes for real-time quantitative PCR studies in Candida glabrata following azole treatment
Q59115123Evaluation of six commonly used reference genes for gene expression studies in herbicide-resistantAvena fatuabiotypes
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Q58775435Expression of a hyperthermophilic endoglucanase in hybrid poplar modifies the plant cell wall and enhances digestibility
Q88733940Expression of endogenous proteins in maize hybrids in a multi-location field trial in India
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Q89748110Identification and validation of reference genes for RT-qPCR normalization in wheat meiosis
Q38663232Identification and validation of reference genes for gene expression studies in sweet osmanthus (Osmanthus fragrans) based on transcriptomic sequence data
Q33411039Identification and validation of reference genes for quantitative RT-PCR normalization in wheat
Q34935432Identification and validation of reference genes for transcript normalization in strawberry (Fragaria × ananassa) defense responses.
Q35361797Identification of Appropriate Reference Genes for qRT-PCR Analysis of Heat-Stressed Mammary Epithelial Cells in Riverine Buffaloes (Bubalus bubalis)
Q41665420Identification of Optimal Reference Genes for Expression Analysis in Radish (Raphanus sativus L.) and Its Relatives Based on Expression Stability
Q36185737Identification of Reference Genes for Quantitative Real-Time PCR in Date Palm (Phoenix dactylifera L.) Subjected to Drought and Salinity
Q33692410Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant
Q40112651Identification of internal control genes in milk-derived mammary epithelial cells during lactation cycle of Indian zebu cow.
Q42697456Identification of new protein-protein and protein-DNA interactions linked with wood formation in Populus trichocarpa.
Q64901547Identification of reliable reference genes for qRT-PCR in the ephemeral plant Arabidopsis pumila based on full-length transcriptome data.
Q94475190Identification of stable reference genes for qPCR studies in common wheat (Triticum aestivum L.) seedlings under short-term drought stress
Q39168452Identification of suitable endogenous control genes for quantitative RT-PCR analysis of miRNA in bovine solid tissues
Q30586784Identification of suitable housekeeping genes for normalization of quantitative real-time PCR data during different physiological stages of mammary gland in riverine buffaloes (Bubalus bubalis).
Q33397852Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions
Q55265449Identifying optimal reference genes for the normalization of microRNA expression in cucumber under viral stress.
Q39776225Increased accumulation and decreased catabolism of anthocyanins in red grape cell suspension culture following magnesium treatment
Q35206986Increased glutamine in leaves of poplar transgenic with pine GS1a caused greater anthranilate synthetase α-subunit (ASA1) transcript and protein abundances: an auxin-related mechanism for enhanced growth in GS transgenics?
Q33347061Induction of PtoCDKB and PtoCYCB transcription by temperature during cambium reactivation in Populus tomentosa Carr
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Q37255303Nitrogen metabolism of two contrasting poplar species during acclimation to limiting nitrogen availability
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Q51892953Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations.
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Q51331575Phosphorus and nitrogen physiology of two contrasting poplar genotypes when exposed to phosphorus and/or nitrogen starvation.
Q46736041Poplar trees for phytoremediation of high levels of nitrate and applications in bioenergy.
Q43942704Poplars with a PtDDM1-RNAi transgene have reduced DNA methylation and show aberrant post-dormancy morphology
Q37395426Pseudomonas aeruginosa PAO1 virulence factors and poplar tree response in the rhizosphere.
Q45220811Quantitative expression analysis of mleP gene and two genes involved in the ABC transport system in Oenococcus oeni during rehydration
Q35559434RNA sequencing of Populus x canadensis roots identifies key molecular mechanisms underlying physiological adaption to excess zinc
Q34720865Rapid one-step quantitative reverse transcriptase PCR assay with competitive internal positive control for detection of enteroviruses in environmental samples
Q33850341RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization
Q36674229Reference Gene Selection for RT-qPCR Analysis of Flower Development in Chrysanthemum morifolium and Chrysanthemum lavandulifolium
Q36259862Reference Gene Selection for qPCR Normalization of Kosteletzkya virginica under Salt Stress
Q39456566Reference gene selection for qPCR in Ammopiptanthus mongolicus under abiotic stresses and expression analysis of seven ROS-scavenging enzyme genes
Q44831716Reference gene selection for quantitative real-time PCR in Chrysanthemum subjected to biotic and abiotic stress
Q34542374Reference gene selection for quantitative real-time PCR normalization in Caragana intermedia under different abiotic stress conditions
Q34243632Reference gene selection for quantitative real-time PCR normalization in Quercus suber
Q34035487Reference gene selection for quantitative real-time PCR normalization in Reaumuria soongorica
Q33696597Reference gene selection for quantitative reverse transcription-polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill
Q34032790Reference genes for gene expression studies in wheat flag leaves grown under different farming conditions
Q38933954Reference genes for high-throughput quantitative reverse transcription-PCR analysis of gene expression in organs and tissues of Eucalyptus grown in various environmental conditions.
Q51464273Reference genes for the normalization of gene expression in eucalyptus species.
Q38147050Reference genes in real-time PCR.
Q34682162Reference genes selection and normalization of oxidative stress responsive genes upon different temperature stress conditions in Hypericum perforatum L
Q36107810Screening Reliable Reference Genes for RT-qPCR Analysis of Gene Expression in Moringa oleifera
Q48066293Seasonal and cell type specific expression of sulfate transporters in the phloem of Populus reveals tree specific characteristics for SO(4)(2-) storage and mobilization
Q93055357Selection and Validation of Appropriate Reference Genes for Quantitative RT-PCR Analysis in Rubia yunnanensis Diels Based on Transcriptome Data
Q55480261Selection and Validation of Reference Genes for mRNA Expression by Quantitative Real-Time PCR Analysis in Neolamarckia cadamba.
Q33354441Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa
Q64069948Selection and validation of reference genes for quantitative expression analysis of miRNAs and mRNAs in Poplar
Q52660758Selection and validation of reference genes for quantitative gene expression analyses in black locust (Robinia pseudoacacia L.) using real-time quantitative PCR.
Q34898738Selection and validation of reference genes for quantitative gene expression studies by real-time PCR in eggplant (Solanum melongena L).
Q35067907Selection and validation of reference genes for real-time quantitative PCR in hyperaccumulating ecotype of Sedum alfredii under different heavy metals stresses
Q40908878Selection and validation of reliable reference genes in Gossypium raimondii
Q58652448Selection of Housekeeping Genes for Transgene Expression Analysis in Eucommia ulmoides Oliver Using Real-Time RT-PCR
Q59279056Selection of Reference Genes for Normalizing Quantitative Real-Time PCR Gene Expression Data with Multiple Variables in Coffea spp
Q35901652Selection of Reference Genes for Real-Time Quantitative PCR in Pinus massoniana Post Nematode Inoculation
Q35813872Selection of Reliable Reference Genes for Gene Expression Studies of a Promising Oilseed Crop, Plukenetia volubilis, by Real-Time Quantitative PCR.
Q33634179Selection of Suitable Reference Genes for Quantitative Real-time PCR in Sapium sebiferum
Q36101411Selection of Suitable Reference Genes for RT-qPCR Normalization under Abiotic Stresses and Hormone Stimulation in Persimmon (Diospyros kaki Thunb).
Q33534047Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR
Q51943925Selection of housekeeping genes for gene expression studies on the development of fruit bearing shoots in Chinese jujube (Ziziphus jujube Mill.).
Q33395091Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
Q33368297Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues
Q46067563Selection of reference gene in Eucalyptus camaldulensis for real-time qRT-PCR.
Q39390277Selection of reference genes for diurnal and developmental time-course real-time PCR expression analyses in lettuce
Q34020382Selection of reference genes for gene expression studies in Siberian Apricot (Prunus sibirica L.) Germplasm using quantitative real-time PCR
Q34045146Selection of reference genes for qPCR in hairy root cultures of peanut
Q33258052Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies
Q33559169Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.).
Q34221360Selection of reference genes for quantitative gene expression studies in Platycladus orientalis (Cupressaceae) Using real-time PCR
Q51928925Selection of reference genes for quantitative real-time PCR analysis in canine mammary tumors using the GeNorm algorithm.
Q33477648Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha
Q39743549Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
Q35591795Selection of reference genes for transcriptional analysis of edible tubers of potato (Solanum tuberosum L.).
Q33484407Selection of reliable reference genes for gene expression studies in peach using real-time PCR
Q50723467Selection of reliable reference genes for quantitative real-time polymerase chain reaction studies in maize grains.
Q36682194Selection of suitable reference genes for assessing gene expression in pearl millet under different abiotic stresses and their combinations
Q90858526Selection of suitable reference genes for gene expression studies in myxosporean (Myxozoa, Cnidaria) parasites
Q35556557Selection of suitable reference genes for qPCR normalization under abiotic stresses and hormone stimuli in carrot leaves
Q87858405Selection of suitable soybean EF1α genes as internal controls for real-time PCR analyses of tissues during plant development and under stress conditions
Q50642419Selection of the internal control gene for real-time quantitative rt-PCR assays in temperature treated Leptospira.
Q46311207Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar.
Q36813323Silencing the genes for dopa decarboxylase or dopachrome conversion enzyme reduces melanization of foreign targets in Anopheles gambiae
Q36064266Small GTP-binding protein PdRanBP regulates vascular tissue development in poplar
Q51916986Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress.
Q100307401Systematic selection and validation of suitable reference genes for quantitative real-time PCR normalization studies of gene expression in Nitraria tangutorum
Q50779619The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in poplar.
Q34602340The Populus superoxide dismutase gene family and its responses to drought stress in transgenic poplar overexpressing a pine cytosolic glutamine synthetase (GS1a).
Q33362195The SHORT-ROOT-like gene PtSHR2B is involved in Populus phellogen activity
Q34002845The glutamine synthetase gene family in Populus
Q43081561The molecular basis of aerobic metabolic remodeling differs between oxidative muscle and liver of threespine sticklebacks in response to cold acclimation
Q54313450The response to daylight or continuous ozone of phenylpropanoid and lignin biosynthesis pathways in poplar differs between leaves and wood.
Q43066955The tyrosyl-DNA phosphodiesterase gene family in Medicago truncatula Gaertn.: bioinformatic investigation and expression profiles in response to copper- and PEG-mediated stress
Q47162545Transcriptional and Hormonal Regulation of Weeping Trait in Salix matsudana.
Q35781808Transgenerational changes in the genome stability and methylation in pathogen-infected plants: (virus-induced plant genome instability).
Q42068895Using RNA-seq data to select reference genes for normalizing gene expression in apple roots
Q35738779Validating Internal Control Genes for the Accurate Normalization of qPCR Expression Analysis of the Novel Model Plant Setaria viridis
Q36693542Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
Q54397124Validation and application of reference genes for quantitative gene expression analyses in various tissues of Bupleurum chinense.
Q36051836Validation of Reference Genes for Gene Expression by Quantitative Real-Time RT-PCR in Stem Segments Spanning Primary to Secondary Growth in Populus tomentosa
Q34123033Validation of a set of reference genes to study response to herbicide stress in grasses
Q42699718Validation of endogenous internal real-time PCR controls in renal tissues
Q33345926Validation of internal control for gene expression study in soybean by quantitative real-time PCR.
Q30000656Validation of reference genes aiming accurate normalization of qRT-PCR data in Dendrocalamus latiflorus Munro
Q33632746Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR.
Q46130893Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions
Q34623692Validation of reference genes for expression analysis by quantitative real-time PCR in Leptinotarsa decemlineata (Say).
Q33531347Validation of reference genes for gene expression analysis in chicory (Cichorium intybus) using quantitative real-time PCR.
Q46091592Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR.
Q34431266Validation of reference genes for gene expression studies in virus-infected Nicotiana benthamiana using quantitative real-time PCR.
Q33525408Validation of reference genes for quantitative RT-PCR studies of gene expression in perennial ryegrass (Lolium perenne L.)
Q36348164Validation of reference genes for quantitative expression analysis by real-time rt-PCR in four lepidopteran insects
Q33522477Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida
Q34612380Validation of reference genes in Solenopsis invicta in different developmental stages, castes and tissues
Q40139328Validation of reference transcripts in strawberry (Fragaria spp.).
Q39607537Validation of suitable reference genes for gene expression analysis in the halophyte Salicornia europaea by real-time quantitative PCR.
Q34699986Variation of expression levels of seven housekeeping genes at different life-history stages in Porphyra yezoensis
Q36182818Whole-Transcriptome Selection and Evaluation of Internal Reference Genes for Expression Analysis in Protocorm Development of Dendrobium officinale Kimura et Migo
Q36348439microRNAs as reference genes for quantitative PCR in cotton.

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