scholarly article | Q13442814 |
P356 | DOI | 10.1002/PROT.22805 |
P953 | full work available online at | https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fprot.22805 |
https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.22805 | ||
P698 | PubMed publication ID | 20665475 |
P50 | author | Nuri A Temiz | Q88533603 |
Marta Bueno | Q92562817 | ||
P2093 | author name string | Carlos J. Camacho | |
P2860 | cites work | The structural basis of Arf effector specificity: the crystal structure of ARF6 in a complex with JIP4 | Q24318796 |
FastContact: a free energy scoring tool for protein-protein complex structures | Q24684487 | ||
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein | Q24811831 | ||
I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure | Q24812223 | ||
Buried water molecules contribute to the conformational stability of a protein | Q27640733 | ||
Structural Rigidity of a Large Cavity-containing Protein Revealed by High-pressure Crystallography | Q27643796 | ||
A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene | Q27643869 | ||
Binding of Rac1, Rnd1, and RhoD to a Novel Rho GTPase Interaction Motif Destabilizes Dimerization of the Plexin-B1 Effector Domain | Q27648718 | ||
Structure of the yeast tRNA m7G methylation complex | Q27649501 | ||
Insights into Oncogenic Mutations of Plexin-B1 Based on the Solution Structure of the Rho GTPase Binding Domain | Q27649860 | ||
Computational redesign of protein-protein interaction specificity | Q47610852 | ||
On the contribution of water-mediated interactions to protein-complex stability | Q48006774 | ||
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. | Q50602336 | ||
Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level | Q51641693 | ||
Continuum electrostatic analysis of preferred solvation sites around proteins in solution | Q58489183 | ||
Role of hydrogen bonds in protein-DNA recognition: a comparison of generalized born and finite difference Poisson-Boltzmann solvation treatments | Q77618567 | ||
Do water molecules mediate protein-DNA recognition? | Q77642681 | ||
SIMPLE estimate of the free energy change due to aliphatic mutations: superior predictions based on first principles | Q80377686 | ||
Structural and mutational analyses of the interaction between the barley alpha-amylase/subtilisin inhibitor and the subtilisin savinase reveal a novel mode of inhibition | Q27650848 | ||
Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme | Q27652053 | ||
The Ternary Structure of the Double-headed Arrowhead Protease Inhibitor API-A Complexed with Two Trypsins Reveals a Novel Reactive Site Conformation | Q27656750 | ||
Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme | Q27656918 | ||
Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer | Q27661466 | ||
Direct observation of protein solvation and discrete disorder with experimental crystallographic phases | Q27732222 | ||
Structural and energetic responses to cavity-creating mutations in hydrophobic cores: observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities | Q27732624 | ||
Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions | Q27733960 | ||
High-resolution structures of variant Zif268–DNA complexes: implications for understanding zinc finger–DNA recognition | Q27749639 | ||
Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography | Q27766416 | ||
Scoring a diverse set of high-quality docked conformations: a metascore based on electrostatic and desolvation interactions | Q28299530 | ||
Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases | Q28307957 | ||
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations | Q29615143 | ||
Theoretical studies of the response of a protein structure to cavity-creating mutations. | Q30326429 | ||
Energy functions for protein design: adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity. | Q30350272 | ||
Energetics of aliphatic deletions in protein cores | Q30355991 | ||
Acidic groups docked to well defined wetted pockets at the core of the binding interface: a tale of scoring and missing protein interactions in CAPRI. | Q30364207 | ||
Structural and energetic consequences of mutations in a solvated hydrophobic cavity. | Q33211090 | ||
Energetics of the protein-DNA-water interaction | Q33268780 | ||
Cavities and atomic packing in protein structures and interfaces | Q33384132 | ||
A review about nothing: are apolar cavities in proteins really empty? | Q33412209 | ||
Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting | Q33627552 | ||
The role of water in protein-DNA recognition | Q35771586 | ||
Protein-DNA recognition patterns and predictions. | Q36115484 | ||
Water at biomolecular binding interfaces | Q36715297 | ||
Intramolecular cavities in globular proteins | Q36738537 | ||
Hydrogen bonds in protein-DNA complexes: where geometry meets plasticity | Q36934003 | ||
Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interface | Q37259073 | ||
Protein-protein interaction and quaternary structure | Q37277360 | ||
Computational analysis of binding of P1 variants to trypsin. | Q38272484 | ||
Computational protein design is a challenge for implicit solvation models | Q40311373 | ||
Cavities in protein-DNA and protein-RNA interfaces | Q42061863 | ||
Buried waters and internal cavities in monomeric proteins | Q42844341 | ||
Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of u | Q43547605 | ||
Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details. | Q45393724 | ||
Organic ligand binding by a hydrophobic cavity in a designed tetrameric coiled-coil protein | Q46179749 | ||
Role of water mediated interactions in protein-protein recognition landscapes | Q46386473 | ||
P433 | issue | 15 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | chemical model | Q25109595 |
protein interaction domains and motifs | Q70688808 | ||
P304 | page(s) | 3226-3234 | |
P577 | publication date | 2010-11-01 | |
2010-11-15 | |||
P1433 | published in | Proteins | Q7251514 |
P1476 | title | Novel modulation factor quantifies the role of water molecules in protein interactions | |
P478 | volume | 78 |
Q37337992 | Molecular simulations of a dynamic protein complex: role of salt-bridges and polar interactions in configurational transitions |
Q60305725 | Predicting protein targets for drug-like compounds using transcriptomics |
Q30380975 | Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures. |
Search more.