A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT

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A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT is …
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scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PPAT.1004967
P3181OpenCitations bibliographic resource ID1984816
P932PMC publication ID4466236
P698PubMed publication ID26068099

P50authorJun LiuQ42230328
Pengfei DingQ59824182
Kirsty A McFarlandQ63368329
P2093author name stringTimothy R Hughes
Bin Xia
Simon L Dove
Bo Duan
Ally Yang
William Wiley Navarre
Grace Tong
Shujuan Jin
P2860cites workExpression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomesQ21092850
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shiftsQ24651272
Molecular archaeology of the Escherichia coli genomeQ24681270
Horizontal gene transfer and the evolution of bacterial and archaeal population structureQ27006506
Solution structure of an A-tract DNA bendQ27630345
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosisQ27659569
Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteinsQ27670439
Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein KaisoQ27672177
Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of LerQ27675789
Molecular Basis for Sequence-Dependent Induced DNA BendingQ27676020
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coliQ27730385
The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motifQ27741511
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANAQ27860611
The Amber biomolecular simulation programsQ27860745
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMRQ27860778
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
NMR View: A computer program for the visualization and analysis of NMR dataQ27860951
Enzymatic assembly of DNA molecules up to several hundred kilobasesQ28241142
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structuresQ28484476
Mycobacterium tuberculosis Lsr2 is a global transcriptional regulator required for adaptation to changing oxygen levels and virulenceQ28487483
H-NS mediates the silencing of laterally acquired genes in bacteriaQ28490022
Biofilm formation in Pseudomonas aeruginosa: fimbrial cup gene clusters are controlled by the transcriptional regulator MvaTQ28493209
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificitiesQ29301030
Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic markQ29614516
Multivalent engagement of chromatin modifications by linked binding modulesQ29617236
Diversity and complexity in DNA recognition by transcription factorsQ29619632
Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filamentQ30462610
Vibrio cholerae H-NS silences virulence gene expression at multiple steps in the ToxR regulatory cascadeQ33180697
Locus of enterocyte effacement-encoded regulator (Ler) of pathogenic Escherichia coli competes off histone-like nucleoid-structuring protein (H-NS) through noncooperative DNA bindingQ33619316
Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosaQ33911477
Absence of a simple code: how transcription factors read the genomeQ34111752
High-order oligomerization is required for the function of the H-NS family member MvaT in Pseudomonas aeruginosaQ34297693
Advancing the quorum in Pseudomonas aeruginosa: MvaT and the regulation of N-acylhomoserine lactone production and virulence gene expressionQ34310534
Bacterial nucleoid-associated protein uncouples transcription levels from transcription timingQ34334679
Evolutionary expansion of a regulatory network by counter-silencingQ34430675
H-NS represses inv transcription in Yersinia enterocolitica through competition with RovA and interaction with YmoA.Q34976494
Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coliQ34976630
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arraysQ35040920
Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolutionQ35070419
CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structuresQ35075570
Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteriaQ35111368
Determination and inference of eukaryotic transcription factor sequence specificityQ35249717
Silencing by H-NS potentiated the evolution of SalmonellaQ35398967
A bacterial two-hybrid system based on transcription activationQ35738269
Origins of specificity in protein-DNA recognition.Q35774615
The promoter architectural landscape of the Salmonella PhoP regulonQ35910863
Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencingQ36093140
Basis for the essentiality of H-NS family members in Pseudomonas aeruginosaQ36197554
What drives proteins into the major or minor grooves of DNA?Q36630637
Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA.Q36851768
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferencesQ36865636
Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2.Q36878497
H-NS family members function coordinately in an opportunistic pathogenQ36999879
DNA A-tracts are not curved in solutions containing high concentrations of monovalent cationsQ37056125
Transcription factor function and promoter architecture govern the evolution of bacterial regulonsQ37112455
Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS.Q37431786
The unique structure of A-tracts and intrinsic DNA bendingQ37512527
Widespread suppression of intragenic transcription initiation by H-NS.Q37582976
Silencing of foreign DNA in bacteriaQ37977667
Exploring the costs of horizontal gene transfer.Q38109292
Selective silencing of foreign DNA with low GC content by the H-NS protein in SalmonellaQ38312504
mvaT mutation modifies the expression of the Pseudomonas aeruginosa multidrug efflux operon mexEF-oprN.Q38316292
Analysis of RovA, a transcriptional regulator of Yersinia pseudotuberculosis virulence that acts through antirepression and direct transcriptional activationQ38319336
Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopyQ38322291
Effect of anaerobiosis on expression of virulence factors in Vibrio choleraeQ40936183
A global modulatory role for the Yersinia enterocolitica H-NS protein.Q41443942
Evolution of transcriptional regulatory circuits in bacteriaQ41902514
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.Q43116314
Characterization of BpH3, an H-NS-like protein in Bordetella pertussisQ48050071
Regulatory evolution at the host-pathogen interfaceQ48228297
SANE (Structure Assisted NOE Evaluation): an automated model-based approach for NOE assignmentQ57078228
MvaT proteins in Pseudomonas spp.: a novel class of H-NS-like proteinsQ57176930
H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencingQ63430392
Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulationQ64449517
Structural and thermodynamic strategies for site-specific DNA binding proteinsQ73195463
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesggplot2Q326489
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)e1004967
P577publication date2015-06-01
P1433published inPLOS PathogensQ283209
P1476titleA Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT
P478volume11

Reverse relations

cites work (P2860)
Q58728313A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity
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Q58696868How bacterial xenogeneic silencer rok distinguishes foreign from self DNA in its resident genome
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Q52597474MucR binds multiple target sites in the promoter of its own gene and is a heat-stable protein: Is MucR a H-NS-like protein?
Q36497535MvaT Family Proteins Encoded on IncP-7 Plasmid pCAR1 and the Host Chromosome Regulate the Host Transcriptome Cooperatively but Differently
Q30830810Silencing of cryptic prophages in Corynebacterium glutamicum
Q92565084Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins
Q27728178Structural similarities and differences in H-NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440
Q91650136The architects of bacterial DNA bridges: a structurally and functionally conserved family of proteins

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