A network-based analysis of systemic inflammation in humans (scientific article (publication date: 13 October 2005))

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Q92219359	Hedgehog Signaling Inhibition by Smoothened Antagonist BMS-833923 Reduces Osteoblast Differentiation and Ectopic Bone Formation of Human Skeletal (Mesenchymal) Stem Cells
Q55554983	Hei-Gu-Teng Zhuifenghuoluo Granule Modulates IL-12 Signal Pathway to Inhibit the Inflammatory Response in Rheumatoid Arthritis.
Q33754596	Hematopoiesis and its disorders: a systems biology approach
Q37174882	High basal metabolic rate is a risk factor for mortality: the Baltimore Longitudinal Study of Aging.
Q35613820	High dynamic range characterization of the trauma patient plasma proteome
Q37065085	High-power femtosecond-terahertz pulse induces a wound response in mouse skin
Q35913459	High-throughput mRNA profiling characterizes the expression of inflammatory molecules in sepsis caused by Burkholderia pseudomallei
Q34486620	Hope for GWAS: relevant risk genes uncovered from GWAS statistical noise.
Q35161494	Host responses to sepsis vary in different low-lethality murine models
Q35927969	Human endometriosis is associated with plasma cells and overexpression of B lymphocyte stimulator
Q38304297	Human experimental endotoxemia in modeling the pathophysiology, genomics, and therapeutics of innate immunity in complex cardiometabolic diseases
Q37846867	Human genetic susceptibility to intracellular pathogens
Q34938931	Human growth is associated with distinct patterns of gene expression in evolutionarily conserved networks.
Q35247557	Human metabolic response to systemic inflammation: assessment of the concordance between experimental endotoxemia and clinical cases of sepsis/SIRS.
Q33851664	Human papillomavirus deregulates the response of a cellular network comprising of chemotactic and proinflammatory genes
Q59807396	Hydrocortisone, Ascorbic Acid and Thiamine (HAT Therapy) for the Treatment of Sepsis. Focus on Ascorbic Acid
Q35107280	Hyperglycemic Ins2AkitaLdlr⁻/⁻ mice show severely elevated lipid levels and increased atherosclerosis: a model of type 1 diabetic macrovascular disease
Q38412875	IMMUNE CELL PHENOTYPE AND FUNCTION IN SEPSIS.
Q43294926	ISG15 governs mitochondrial function in macrophages following vaccinia virus infection.
Q34321053	Identification and validation of Ifit1 as an important innate immune bottleneck
Q30002303	Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression
Q53544703	Identification of cellular targets for the human papillomavirus E6 and E7 oncogenes by RNA interference and transcriptome analyses.
Q40462980	Identification of differentially activated cell-signaling networks associated with pichinde virus pathogenesis by using systems kinomics.
Q64890677	Identification of differentially expressed genes in MG63 osteosarcoma cells with drug‑resistance by microarray analysis.
Q49412994	Identification of differentially expressed genes in human breast cancer cells induced by 4-hydroxyltamoxifen and elucidation of their pathophysiological relevance and mechanisms.
Q34114194	Identification of fetal and maternal single nucleotide polymorphisms in candidate genes that predispose to spontaneous preterm labor with intact membranes
Q34519267	Identification of genes whose expression is altered by obesity throughout the arterial tree.
Q51051024	Identification of inflammatory bowel disease-related proteins using a reverse k-nearest neighbor search.
Q36657572	Identification of innate immunity genes and pathways using a comparative genomics approach
Q47275675	Identification of key pathogenic genes of sepsis based on the Gene Expression Omnibus database
Q38938112	Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis
Q38962390	Identification of molecular sub-networks associated with cell survival in a chronically SIVmac-infected human CD4+ T cell line
Q37245426	Identification of neuronal target genes for CCAAT/enhancer binding proteins
Q39118557	Identification of novel DNA-methylated genes that correlate with human prostate cancer and high-grade prostatic intraepithelial neoplasia.
Q34264912	Identification of novel low-dose bisphenol a targets in human foreskin fibroblast cells derived from hypospadias patients
Q30438982	Identification of pediatric septic shock subclasses based on genome-wide expression profiling
Q37332611	Identification of the Rock-dependent transcriptome in rodent fibroblasts
Q33712853	Identification of the early VIP-regulated transcriptome and its associated, interactome in resting and activated murine CD4 T cells
Q33633046	Identification of the key differential transcriptional responses of human whole blood following TLR2 or TLR4 ligation in-vitro
Q28082850	Identifying Novel Biomarkers in Sarcoidosis Using Genome-Based Approaches
Q33421110	Identifying disease-specific genes based on their topological significance in protein networks
Q26823854	Identifying novel spatiotemporal regulators of innate immunity
Q90261730	Immune therapy in sepsis: Are we ready to try again?
Q33858844	Immunological network signatures of cancer progression and survival
Q51462733	Impact of a mechanical massage on gene expression profile and lipid mobilization in female gluteofemoral adipose tissue.
Q35159879	Impact of exercise training on endothelial transcriptional profiles in healthy swine: a genome-wide microarray analysis.
Q28743723	Importance of correlation between gene expression levels: application to the type I interferon signature in rheumatoid arthritis
Q26825209	In silico modeling: methods and applications to trauma and sepsis
Q28474971	In silico simulation of corticosteroids effect on an NFkB- dependent physicochemical model of systemic inflammation
Q34091078	In vivo endotoxin synchronizes and suppresses clock gene expression in human peripheral blood leukocytes
Q35977966	Incidence, clinical predictors, genomics, and outcome of acute kidney injury among trauma patients.
Q35672031	Increased expression of neutrophil-related genes in patients with early sepsis-induced ARDS.
Q36313986	Individual matrix metalloproteinases control distinct transcriptional responses in airway epithelial cells infected with Pseudomonas aeruginosa.
Q33784887	Induced sputum proteome in healthy subjects and asthmatic patients
Q37159157	Inductive and suppressive networks regulate TLR9-dependent gene expression in vivo
Q37606976	Inflammation and epigenetic regulation in osteoarthritis
Q51554277	Inflammation in induced sputum after aluminium oxide exposure: an experimental chamber study.
Q90168064	Inflammation-related biomarkers in major psychiatric disorders: a cross-disorder assessment of reproducibility and specificity in 43 meta-analyses
Q35933310	Inflammatory gene polymorphisms and risk of postoperative myocardial infarction after cardiac surgery
Q40218186	Inflammatory signals from photoreceptor modulate pathological retinal angiogenesis via c-Fos.
Q27692695	Inflection points in sepsis biology: from local defense to systemic organ injury
Q98466327	Influence of the MUC1 Cell Surface Mucin on Gastric Mucosal Gene Expression Profiles in Response to Helicobacter pylori Infection in Mice
Q43201052	Ingenuity pathway analysis of clozapine-induced obesity.
Q30471332	Ingestion-controlling network: what's language got to do with it?
Q36498232	Inhibition of Hif1α prevents both trauma-induced and genetic heterotopic ossification
Q36305612	Innate immunity gene expression changes in critically ill patients with sepsis and disease-related malnutrition
Q30484002	InnateDB: facilitating systems-level analyses of the mammalian innate immune response.
Q31165480	Insights from computational modeling in inflammation and acute rejection in limb transplantation
Q34436868	Insights into the pathogenesis of axial spondyloarthropathy from network and pathway analysis
Q30774194	Insights into the pathophysiology of catch-up compared with non-catch-up growth in children born small for gestational age: an integrated analysis of metabolic and transcriptomic data
Q37055842	Integrated approaches to uncovering transcription regulatory networks in mammalian cells
Q60922135	Integration of DNA methylation patterns and genetic variation in human pediatric tissues help inform EWAS design and interpretation
Q26824897	Integrative approaches for finding modular structure in biological networks
Q35976931	Integrative miRNA-mRNA profiling of adipose tissue unravels transcriptional circuits induced by sleep fragmentation
Q30278644	Integrative pathway genomics of lung function and airflow obstruction
Q37207041	Interactions among type I and type II interferon, tumor necrosis factor, and beta-estradiol in the regulation of immune response-related gene expressions in systemic lupus erythematosus
Q35634220	Interferon regulatory factor 7 is a major hub connecting interferon-mediated responses in virus-induced asthma exacerbations in vivo
Q35692077	Interleukin-1 receptor-associated kinase 3 gene associates with susceptibility to acute lung injury
Q31155261	Interleukin-6 receptor rs7529229 T/C polymorphism is associated with left main coronary artery disease phenotype in a Chinese population
Q48273918	Intermittent hypoxia activates temporally coordinated transcriptional programs in visceral adipose tissue
Q34197603	Intermittent hypoxia mobilizes bone marrow-derived very small embryonic-like stem cells and activates developmental transcriptional programs in mice
Q36633643	Intracellular signal-responsive artificial gene regulation.
Q34420404	Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
Q38796321	Investigating the neuroimmunogenic architecture of schizophrenia
Q41761380	Investigating the validity of current network analysis on static conglomerate networks by protein network stratification
Q33723516	Is human blood a good surrogate for brain tissue in transcriptional studies?
Q37104899	Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device
Q37557080	KERIS: kaleidoscope of gene responses to inflammation between species
Q33993559	Kdo2-Lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4.
Q34984636	Knock down of GCN5 histone acetyltransferase by siRNA decreases ethanol-induced histone acetylation and affects differential expression of genes in human hepatoma cells
Q89094735	Knockdown of Crispld2 in zebrafish identifies a novel network for nonsyndromic cleft lip with or without cleft palate candidate genes
Q89586763	Knockdown of MCM10 Gene Impairs Glioblastoma Cell Proliferation, Migration and Invasion and the Implications for the Regulation of Tumorigenesis
Q33528276	Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
Q34544374	LPS ligand and culture additives improve production of monomeric MD-1 and 2 in Pichia pastoris by decreasing aggregation and intermolecular disulfide bonding
Q36240643	LPS-induced modules of co-expressed genes in equine peripheral blood mononuclear cells
Q35800407	Lactobacillus rhamnosus CNCMI-4317 Modulates Fiaf/Angptl4 in Intestinal Epithelial Cells and Circulating Level in Mice.
Q37802870	Large-scale protein interactome mapping: strategies and opportunities
Q48193297	Large-scale reduction of tyrosine kinase activities in human monocytes stimulated in vitro with N. meningitidis
Q34082462	Leukocyte subset-derived genomewide expression profiles in pediatric septic shock
Q91681740	Leukocyte transcriptional signatures dependent on LPS dosage in human endotoxemia
Q28704307	Leveraging models of cell regulation and GWAS data in integrative network-based association studies
Q52998087	Lies, damn lies, and statistics: the perils of the P value.
Q36070874	Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling
Q24650951	Lipid A modification systems in gram-negative bacteria
Q92155264	Lipid metabolism impairment in patients with sepsis secondary to hospital acquired pneumonia, a proteomic analysis
Q34439268	Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition
Q36890028	Local sparse bump hunting reveals molecular heterogeneity of colon tumors
Q33805159	Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics.
Q36392640	Longitudinal increases in mitochondrial DNA levels in blood cells are associated with survival in critically ill patients
Q27332261	Low-dose curcumin stimulates proliferation, migration and phagocytic activity of olfactory ensheathing cells
Q26823225	Lysosome and Cytoskeleton Pathways Are Robustly Enriched in the Blood of Septic Patients: A Meta-Analysis of Transcriptomic Data
Q35878417	MAPT isoforms: differential transcriptional profiles related to 3R and 4R splice variants
Q33734468	MYC regulation of a "poor-prognosis" metastatic cancer cell state
Q35039679	Macrophage immunoregulatory pathways in tuberculosis
Q36511461	Malaria tolerance--for whom the cell tolls?
Q37340565	Management of neonatal sepsis by Gram-negative pathogens
Q42753051	Manipulation of inflammation in ARDS: achievable goal or distant target?
Q21145361	Mapping gene associations in human mitochondria using clinical disease phenotypes
Q36236245	Mechanistic Study of the Phytocompound, 2- β -D-Glucopyranosyloxy-1-hydroxytrideca-5,7,9,11-tetrayne in Human T-Cell Acute Lymphocytic Leukemia Cells by Using Combined Differential Proteomics and Bioinformatics Approaches
Q34274318	Merging experimental data and in silico analysis: a systems-level approach to autoimmune disease and cancer.
Q38615950	Meta-analysis of high-throughput datasets reveals cellular responses following hemorrhagic fever virus infection.
Q36203024	Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization
Q31119681	Meta-analysis of microarray-derived data from PACAP-deficient adrenal gland in vivo and PACAP-treated chromaffin cells identifies distinct classes of PACAP-regulated genes.
Q64107278	Metabolic gene NR4A1 as a potential therapeutic target for non-smoking female non-small cell lung cancer patients
Q37599467	Metabolomics in pneumonia and sepsis: an analysis of the GenIMS cohort study
Q35997428	Methamphetamine abuse affects gene expression in brain-derived microglia of SIV-infected macaques to enhance inflammation and promote virus targets
Q51771549	Method of regulatory network that can explore protein regulations for disease classification.
Q28390889	MicroRNA signature characterizes primary tumors that metastasize in an esophageal adenocarcinoma rat model
Q99406327	MicroRNA-3148 acts as molecular switch promoting malignant transformation and adipocytic differentiation of immortalized human bone marrow stromal cells via direct targeting of the SMAD2/TGFβ pathway
Q37766208	MicroRNAs--regulators of signaling networks in dilated cardiomyopathy
Q34700334	Microarray and pathway analysis reveal distinct mechanisms underlying cannabinoid-mediated modulation of LPS-induced activation of BV-2 microglial cells
Q37080710	Microarray and pathway analysis reveals decreased CDC25A and increased CDC42 associated with slow growth of BCL2 overexpressing immortalized breast cell line
Q33570300	Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients
Q37642583	Microfluidics-based capture of human neutrophils for expression analysis in blood and bronchoalveolar lavage
Q35238520	Microsomal prostaglandin E synthase-2 is not essential for in vivo prostaglandin E2 biosynthesis
Q33778336	Minimal peroxide exposure of neuronal cells induces multifaceted adaptive responses
Q41905411	Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.
Q37739000	Mitochondrial Dysfunction and Immune Cell Metabolism in Sepsis.
Q34990992	Mitochondrial dysfunction during sepsis: still more questions than answers.
Q46929110	Mitochondrial dysfunctions in myalgic encephalomyelitis/chronic fatigue syndrome explained by activated immuno-inflammatory, oxidative and nitrosative stress pathways
Q36443509	Modeling cellular machinery through biological network comparison
Q35917642	Modeling community-wide molecular networks of multicellular systems
Q34611156	Modeling endotoxin-induced systemic inflammation using an indirect response approach
Q38058812	Modeling physiologic variability in human endotoxemia.
Q35737359	Modulating LPS signal transduction at the LPS receptor complex with synthetic Lipid A analogues
Q58732411	Modulation in the microRNA repertoire is responsible for the stage-specific effects of Akt suppression on murine neuroendocrine prostate cancer
Q38295550	Modulation of immune response gene expression by echinacea extracts: results of a gene array analysis
Q37078095	Module-based breast cancer classification
Q34624769	Modules, networks and systems medicine for understanding disease and aiding diagnosis.
Q57773503	Molecular Diagnostics in Sepsis: From Bedside to Bench
Q37114392	Molecular and genetic inflammation networks in major human diseases.
Q35659340	Molecular architecture of the stria vascularis membrane transport system, which is essential for physiological functions of the mammalian cochlea.
Q37663707	Molecular networks for the study of TCM pharmacology.
Q40200166	Molecular portrait of high productivity in recombinant NS0 cells
Q34192190	Molecular signatures in post-mortem brain tissue of younger individuals at high risk for Alzheimer's disease as based on APOE genotype
Q34585151	Monitoring immune dysfunctions in the septic patient: a new skin for the old ceremony
Q37419056	Monitoring of multiple sclerosis immunotherapy: from single candidates to biomarker networks.
Q37243739	Motif-specific sampling of phosphoproteomes
Q42672310	Mouse-specific tandem IgY7-SuperMix immunoaffinity separations for improved LC-MS/MS coverage of the plasma proteome.
Q37288384	Mucosa-reparing and microbiota-balancing therapeutic effect of Bacillus subtilis alleviates dextrate sulfate sodium-induced ulcerative colitis in mice
Q23917421	Multi-walled carbon nanotube-induced gene expression in the mouse lung: association with lung pathology
Q56601695	Multiple effects of a short-term dexamethasone treatment in human skeletal muscle and adipose tissue
Q33924871	Multiscale model for the assessment of autonomic dysfunction in human endotoxemia
Q38690754	Murine Models of Sepsis and Trauma: Can We Bridge the Gap?
Q37092859	NALP3-Inflammasome-Related Gene Polymorphisms in Patients with Prehypertension and Coronary Atherosclerosis.
Q42644858	NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.
Q34316790	NetWalker: a contextual network analysis tool for functional genomics
Q38258734	Network Medicine: New Paradigm in the -Omics Era.
Q26740527	Network analysis and juvenile idiopathic arthritis (JIA): a new horizon for the understanding of disease pathogenesis and therapeutic target identification
Q26822484	Network analysis: a new approach to study endocrine disorders
Q58249849	Network approaches to the genetic dissection of phenotypes in animals and humans
Q33373148	Network evaluation from the consistency of the graph structure with the measured data
Q29547462	Network medicine: a network-based approach to human disease
Q92510086	Network of Mediators for Vascular Inflammation and Leakage Is Dysbalanced during Cytoreductive Surgery for Late-Stage Ovarian Cancer
Q35118812	Network representations of immune system complexity
Q35599116	Network-Based Identification of Smoking-Associated Gene Signature for Lung Cancer
Q91105875	Network-based Biased Tree Ensembles (NetBiTE) for Drug Sensitivity Prediction and Drug Sensitivity Biomarker Identification in Cancer
Q29616384	Network-based classification of breast cancer metastasis
Q28397059	Network-based identification of biomarkers coexpressed with multiple pathways
Q46132991	Network-guided regression for detecting associations between DNA methylation and gene expression.
Q99576354	New Agents in Development for Sepsis: Any Reason for Hope?
Q34303687	New approaches to sepsis: molecular diagnostics and biomarkers.
Q79440723	Nicotine exposure alters in vivo human responses to endotoxin
Q37200639	Noninjurious mechanical ventilation activates a proinflammatory transcriptional program in the lung
Q90169385	Notch Signaling Inhibition by LY411575 Attenuates Osteoblast Differentiation and Decreased Ectopic Bone Formation Capacity of Human Skeletal (Mesenchymal) Stem Cells
Q37367885	Novel pharmacologic approaches to the management of sepsis: targeting the host inflammatory response
Q35219825	Novel regulators of the systemic response to lipopolysaccharide
Q24624194	Novel susceptibility loci for second primary tumors/recurrence in head and neck cancer patients: large-scale evaluation of genetic variants
Q33636236	Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue
Q37584566	Nutrition of the critically ill - emphasis on liver and pancreas
Q36607663	Nutrition of the critically ill — a 21st-century perspective.
Q34626421	Of mice and men: comparative proteomics of bronchoalveolar fluid.
Q38491004	On the importance of small changes in RNA expression
Q33342373	Onto-CC: a web server for identifying Gene Ontology conceptual clusters
Q28291731	Overlapping gene expression profiles of cell migration and tumor invasion in human bladder cancer identify metallothionein 1E and nicotinamide N-methyltransferase as novel regulators of cell migration
Q92509199	PUM1 knockdown prevents tumor progression by activating the PERK/eIF2/ATF4 signaling pathway in pancreatic adenocarcinoma cells
Q38137634	PainNetworks: a web-based resource for the visualisation of pain-related genes in the context of their network associations
Q33335133	Parasite burden and CD36-mediated sequestration are determinants of acute lung injury in an experimental malaria model.
Q38980695	Partitioning the heritability of coronary artery disease highlights the importance of immune-mediated processes and epigenetic sites associated with transcriptional activity
Q37748077	Pathogenic mechanisms of allergic inflammation: atopic asthma as a paradigm
Q33762394	Pathophysiology of endotoxin tolerance: mechanisms and clinical consequences
Q33349282	Pathophysiology of septic encephalopathy--an unsolved puzzle
Q40191051	Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line
Q26995884	Pathway mapping and development of disease-specific biomarkers: protein-based network biomarkers
Q42161246	Pathway-based identification of a smoking associated 6-gene signature predictive of lung cancer risk and survival
Q38644316	Patients experiencing statin-induced myalgia exhibit a unique program of skeletal muscle gene expression following statin re-challenge
Q36737572	Patterns of cell signaling pathway activation that characterize mammary development.
Q35131265	Patterns of gene expression in peripheral blood mononuclear cells and outcomes from patients with sepsis secondary to community acquired pneumonia
Q34500398	Peripheral blood leukocyte gene expression patterns and metabolic parameters in habitually snoring and non-snoring children with normal polysomnographic findings.
Q33529091	Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells
Q34280020	Persistent systemic inflammation is associated with poor clinical outcomes in COPD: a novel phenotype
Q47148355	Personalized physiological medicine
Q37015336	Pharmacogenomics and end-organ susceptibility to injury in the perioperative period
Q37646786	Pharmacogenomics of insulin-like growth factor-I generation during GH treatment in children with GH deficiency or Turner syndrome
Q40964104	Phenotypic changes in the brain of SIV-infected macaques exposed to methamphetamine parallel macrophage activation patterns induced by the common gamma-chain cytokine system
Q38113306	Phosphoproteomics-based network medicine.
Q34978316	Physiologic variability at the verge of systemic inflammation: multiscale entropy of heart rate variability is affected by very low doses of endotoxin
Q37688169	Plasma MiRNA alterations between NSCLC patients harboring Del19 and L858R EGFR mutations
Q34154148	Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics
Q33319553	Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram
Q40204179	Platelet-derived microvesicles induce differential gene expression in monocytic cells: a DNA microarray study
Q59235075	Polimorfismos del ADN mitocondrial y mortalidad en la sepsis. ¿Hemos hallado la aguja en el pajar?
Q35015398	Polymorphisms in maternal and fetal genes encoding for proteins involved in extracellular matrix metabolism alter the risk for small-for-gestational-age
Q36953651	Post-transcriptional gene regulation by HuR promotes a more tumorigenic phenotype
Q45231130	Postnatal amniotic fluid intake reduces gut inflammatory responses and necrotizing enterocolitis in preterm neonates
Q30454963	Potential Impact of miR-137 and Its Targets in Schizophrenia
Q61443557	Potential biomarkers of acute myocardial infarction based on weighted gene co-expression network analysis
Q31142350	Potential cancer-related role of circadian gene TIMELESS suggested by expression profiling and in vitro analyses
Q42152227	Pre-conditioning with synthetic CpG-oligonucleotides attenuates myocardial ischemia/reperfusion injury via IL-10 up-regulation
Q36751746	Prediction of disease-gene-drug relationships following a differential network analysis
Q34535852	Prediction of human disease-related gene clusters by clustering analysis
Q38502201	Preliminary evidence for leukocyte transcriptional signatures for pediatric ventilator-associated pneumonia.
Q36746938	Presymptomatic prediction of sepsis in intensive care unit patients.
Q31158139	Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data
Q81028408	Profiling genes in the ICU: are we there yet?
Q35850143	Profiling signaling polarity in chemotactic cells.
Q40510040	Prostaglandin E₂ constrains systemic inflammation through an innate lymphoid cell-IL-22 axis
Q30416903	Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation
Q37125547	Protein networks in disease
Q30002405	Protein-protein interactions: analysis and prediction
Q35988805	Proteolytic Cleavage of AMPKα and Intracellular MMP9 Expression Are Both Required for TLR4-Mediated mTORC1 Activation and HIF-1α Expression in Leukocytes.
Q35685397	Proteome from patients with metabolic syndrome is regulated by quantity and quality of dietary lipids.
Q30483815	Proteomic and computational analysis of bronchoalveolar proteins during the course of the acute respiratory distress syndrome
Q33512916	Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling
Q36328527	Proteomic characterization of epicardial-myocardial signaling reveals novel regulatory networks including a role for NF-κB in epicardial EMT.
Q42365502	Proteomic footprint of myocardial ischemia/reperfusion injury: Longitudinal study of the at-risk and remote regions in the pig model.
Q34626049	Proteomic profiling of bronchoalveolar lavage fluid in critically ill patients with ventilator-associated pneumonia
Q34082869	Proteomic signatures of human oral epithelial cells in HIV-infected subjects
Q47398299	Proteomic study revealed cellular assembly and lipid metabolism dysregulation in sepsis secondary to community-acquired pneumonia.
Q38266035	Proteomics for systems toxicology
Q40671746	Proteomics of the corpus callosum unravel pivotal players in the dysfunction of cell signaling, structure, and myelination in schizophrenia brains
Q38885740	Psychiatric disorders biochemical pathways unraveled by human brain proteomics
Q36272558	Pulsed Azidohomoalanine Labeling in Mammals (PALM) Detects Changes in Liver-Specific LKB1 Knockout Mice.
Q100385859	Quantitative analysis of global protein stability rates in tissues
Q35914539	Quantitative analysis of human immunodeficiency virus type 1-infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production
Q37649220	Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition
Q64123698	Quantitative temporal analysis of protein dynamics in cardiac remodeling
Q47341153	Quantitative trait loci influencing low density lipoprotein particle size in African Americans
Q42335704	RNA sequencing analyses reveal novel differentially expressed genes and pathways in pancreatic cancer
Q34530641	RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia
Q21093255	Racial disparity in pathophysiologic pathways of preterm birth based on genetic variants
Q37325253	Recent progress using systems biology approaches to better understand molecular mechanisms of immunity
Q42170665	Refinement and expansion of signaling pathways: the osmotic response network in yeast
Q33810589	Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model
Q33280659	Regulatory network of inflammation downstream of proteinase-activated receptors
Q35634129	Relationships among the concentrations of 25 inflammation-associated proteins during the first postnatal weeks in the blood of infants born before the 28th week of gestation
Q33513479	Relationships between hematopoiesis and hepatogenesis in the midtrimester fetal liver characterized by dynamic transcriptomic and proteomic profiles
Q33304879	Repeated BCG treatment of mouse bladder selectively stimulates small GTPases and HLA antigens and inhibits single-spanning uroplakins.
Q30539988	Resolvin D2 restores neutrophil directionality and improves survival after burns
Q31066861	Resources for integrative systems biology: from data through databases to networks and dynamic system models
Q36772416	Retinal lipid and glucose metabolism dictates angiogenesis through the lipid sensor Ffar1.
Q38470599	Revealing the Strong Functional Association of adipor2 and cdh13 with adipoq: A Gene Network Study.
Q50050228	Reverse Engineering the Inflammatory "Clock": From Computational Modeling to Rational Resetting.
Q41622494	Role of Oxidative Stress and Mitochondrial Dysfunction in Sepsis and Potential Therapies.
Q39387335	Role of miR-19b and its target mRNAs in 5-fluorouracil resistance in colon cancer cells.
Q91776383	Role of neuroendocrine modulation and biochemistry in the sepsis in Piaractus mesopotamicus
Q35043680	Role of tumor necrosis factor-α in the human systemic endotoxin-induced transcriptome
Q34438754	Roles of SIRT1 in the acute and restorative phases following induction of inflammation
Q36664121	Roles of heat-shock protein 70 in protecting against intestinal mucosal damage
Q35668432	Ruminal Transcriptomic Analysis of Grass-Fed and Grain-Fed Angus Beef Cattle
Q39705556	SMARCA2 and other genome-wide supported schizophrenia-associated genes: regulation by REST/NRSF, network organization and primate-specific evolution
Q38823959	SPARC overexpression alters microRNA expression profiles involved in tumor progression
Q36470840	SYSTEM-WIDE MAPPING OF ACTIVATED CIRCUITRY IN EXPERIMENTAL SYSTEMIC INFLAMMATORY RESPONSE SYNDROME.
Q37129368	Sarcoidosis activates diverse transcriptional programs in bronchoalveolar lavage cells.
Q30479226	Selective degradation of transcripts during meiotic maturation of mouse oocytes
Q43789576	Sepsis : putting knowledge into practice
Q94947502	Sepsis redefined: the search for surrogate markers
Q38453261	Sepsis: a roadmap for future research
Q64112480	Sepsis: evolving concepts and challenges
Q36757452	Sepsis: from pattern to mechanism and back.
Q37239817	Sepsis: links between pathogen sensing and organ damage
Q22255578	Sepsis: rethinking the approach to clinical research
Q33695664	Short- and long-term changes in gene expression mediated by the activation of TLR9
Q36973156	Similarly Lethal Strains of Extraintestinal Pathogenic Escherichia coli Trigger Markedly Diverse Host Responses in a Zebrafish Model of Sepsis.
Q50716381	Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.
Q101159101	Single-Cell Transcriptome Analysis Highlights a Role for Neutrophils and Inflammatory Macrophages in the Pathogenesis of Severe COVID-19
Q47245579	Sirtuin 1-Chromatin-Binding Dynamics Points to a Common Mechanism Regulating Inflammatory Targets in SIV Infection and in the Aging Brain
Q33403099	Sparse canonical methods for biological data integration: application to a cross-platform study.
Q30483613	Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network
Q54445458	Specific gene expression signature associated with development of autoimmune type-I diabetes using whole-blood microarray analysis.
Q33735322	Stimulatory effect of Echinacea purpurea extract on the trafficking activity of mouse dendritic cells: revealed by genomic and proteomic analyses
Q50885568	Strategic Targeting of Multiple BMP Receptors Prevents Trauma-Induced Heterotopic Ossification.
Q33551373	Streptococcus pneumoniae and Pseudomonas aeruginosa pneumonia induce distinct host responses
Q90572947	Structural Analysis of Hippocampal Kinase Signal Transduction
Q34340507	Studying and modelling dynamic biological processes using time-series gene expression data
Q34031515	Sub-typing of rheumatic diseases based on a systems diagnosis questionnaire
Q36286867	Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression
Q35027856	Subventricular zone microglia transcriptional networks
Q33558619	Support Vector Machines with Disease-gene-centric Network Penalty for High Dimensional Microarray Data
Q36093490	Survival and mitochondrial function in septic patients according to mitochondrial DNA haplogroup.
Q34400938	Susceptibility to acute rheumatic fever based on differential expression of genes involved in cytotoxicity, chemotaxis, and apoptosis
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P6179	Dimensions Publication ID	1010326831
P356	DOI	10.1038/NATURE03985
P3181	OpenCitations bibliographic resource ID	187811
P698	PubMed publication ID	16136080
P5875	ResearchGate publication ID	7625271

P2093	author name string	Tompkins RG
		Davis RW
		Xiao W
		Moldawer LL
		Baker HV
		Mindrinos MN
		Cobb JP
		Lowry SF
		Brownstein BH
		Cho RJ
		Richards DR
		Calvano SE
		Chen RO
		Felciano RM
		Miller-Graziano C
		Tschoeke SK
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P2507	corrigendum / erratum	Erratum: Corrigendum: A network-based analysis of systemic inflammation in humans	Q58072552
P433	issue	7061
P407	language of work or name	English	Q1860
P921	main subject	inflammation	Q101991
		systemic inflammation	Q7663815
P304	page(s)	1032-7
P577	publication date	2005-10-13
P1433	published in	Nature	Q180445
P1476	title	A network-based analysis of systemic inflammation in humans
P478	volume	437

A network-based analysis of systemic inflammation in humans

scientific article (publication date: 13 October 2005)

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