iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D.

scientific article

iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/GIGASCIENCE/GIX054
P932PMC publication ID5554349
P698PubMed publication ID28814063

P2093author name stringAaron Gabow
Manda Wilson
Zeynep H Gümüs
Vaja Liluashvili
Eugene Fluder
Selim Kalayci
P2860cites workMulti-level graph layout on the GPU.Q51624876
Graph drawing by force-directed placementQ55954181
An algorithm for drawing general undirected graphsQ56428731
A faster algorithm for betweenness centrality*Q56486283
Organization of modular networksQ59280451
Network Medicine Strikes a Blow against Breast CancerQ59304980
Effects of stereoscopic and rotational displays in a three-dimensional path-tracing taskQ72617916
Integrative annotation of variants from 1092 humans: application to cancer genomicsQ22065599
Scale-free networks in cell biologyQ22306161
Charting the molecular network of the drug target Bcr-AblQ24317707
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Community structure in social and biological networksQ24534298
Modularity and community structure in networksQ24548534
Global topological features of cancer proteins in the human interactomeQ24672981
Osprey: a network visualization systemQ24791459
High-betweenness proteins in the yeast protein interaction networkQ24811703
VisANT: data-integrating visual framework for biological networks and modulesQ24812791
Pathguide: a pathway resource listQ25256662
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and futureQ26796849
Emergence of Scaling in Random NetworksQ27037290
Collective dynamics of 'small-world' networksQ27861064
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortalQ28288215
Computational solutions to large-scale data management and analysisQ28743172
Lethality and centrality in protein networksQ29547267
Network motifs: simple building blocks of complex networksQ29547340
Network motifs in the transcriptional regulation network of Escherichia coliQ29547342
Circos: an information aesthetic for comparative genomicsQ29547653
Drug-target networkQ29614447
A network-based analysis of systemic inflammation in humansQ29617040
Architecture of the human regulatory network derived from ENCODE dataQ29617046
CR1 and the "vanishing amyloid" hypothesis of Alzheimer's diseaseQ30421877
A century of Gestalt psychology in visual perception: I. Perceptual grouping and figure-ground organizationQ30424382
Co-expression among constituents of a motif in the protein-protein interaction networkQ30491292
3DScapeCS: application of three dimensional, parallel, dynamic network visualization in CytoscapeQ30557509
BiNA: a visual analytics tool for biological network dataQ30759823
Fulfilling the promise: drug discovery in the post-genomic era.Q30886248
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics dataQ30997243
Construction, visualisation, and clustering of transcription networks from microarray expression dataQ31134525
4D bioinformatics: a new look at the ribosome as an exampleQ33187867
Novel breast cancer biomarkers identified by integrative proteomic and gene expression mappingQ33322353
Arena3D: visualization of biological networks in 3D.Q33387948
CAVEman: Standardized anatomical context for biomedical data mappingQ33403775
Automated network analysis identifies core pathways in glioblastomaQ33532647
Visualization of omics data for systems biologyQ33535721
Discovering hidden relationships between renal diseases and regulated genes through 3D network visualizationsQ33744411
The knowledge-integrated network biomarkers discovery for major adverse cardiac eventsQ33789038
Interpretation of genomic variants using a unified biological network approachQ34625256
Dynamic modularity in protein interaction networks predicts breast cancer outcomeQ34934057
Computational methods of analysis of protein-protein interactionsQ35165246
Pharmacophylogenomics: genes, evolution and drug targetsQ35194747
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamicsQ35753717
Systems biology in drug discoveryQ35911464
The efficiency of multi-target drugs: the network approach might help drug designQ36088532
Network theory to understand microarray studies of complex diseasesQ36615270
Protein kinase C epsilon: an oncogene and emerging tumor biomarkerQ37109953
A systems biology approach to drug discoveryQ37115945
Identification of discriminating biomarkers for human disease using integrative network biologyQ37357916
Exploring biological networks with Cytoscape softwareQ45054960
A Study of Layout, Rendering, and Interaction Methods for Immersive Graph VisualizationQ46493190
Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensionsQ47323344
Functional and topological characterization of protein interaction networksQ47866212
Integration of metabolic networks and gene expression in virtual realityQ48481722
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P433issue8
P921main subjectstereoscopyQ35158
visualizationQ451553
open-source softwareQ1130645
immersive analyticsQ115416976
P1104number of pages13
P304page(s)1-13
P577publication date2017-08-01
P1433published inGigaScienceQ19969338
P1476titleiCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D.
P478volume6

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cites work (P2860)
Q64245763BioVR: a platform for virtual reality assisted biological data integration and visualization
Q90439302Exploring Biological Networks in 3D, Stereoscopic 3D, and Immersive 3D with iCAVE
Q55486457OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space.
Q90581720Using OmicsNet for Network Integration and 3D Visualization