Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays

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Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1035094532
P356DOI10.1038/NPROT.2009.98
P932PMC publication ID2858690
P698PubMed publication ID19798082
P5875ResearchGate publication ID26864451

P50authorJ. Keith JoungQ28033740
P2093author name stringDaniel F Voytas
Jeffry D Sander
Morgan L Maeder
Stacey Thibodeau-Beganny
P2860cites workIn vivo site-specific DNA methylation with a designed sequence-enabled DNA methylase.Q46025403
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Progress and prospects: zinc-finger nucleases as gene therapy agentsQ24650545
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modificationQ24651280
Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleasesQ24652815
High-frequency modification of plant genes using engineered zinc-finger nucleasesQ24654686
Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleasesQ24680179
A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactionsQ24681782
Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selectionQ24683209
Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexesQ27635218
Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactionsQ27733960
Enhancing Gene Targeting with Designed Zinc Finger NucleasesQ28202461
Engineering polydactyl zinc-finger transcription factorsQ28217078
Highly efficient endogenous human gene correction using designed zinc-finger nucleasesQ28243157
Precise genome modification in the crop species Zea mays using zinc-finger nucleasesQ28243268
Gene targeting using zinc finger nucleasesQ28265983
Unexpected failure rates for modular assembly of engineered zinc fingersQ28278303
Zinc-finger nucleases: the next generation emergesQ28283445
Targeted transgene integration in plant cells using designed zinc finger nucleasesQ28305200
An improved zinc-finger nuclease architecture for highly specific genome editingQ28307951
Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleasesQ28307957
Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector deliveryQ29014419
Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleasesQ29615069
Chimeric nucleases stimulate gene targeting in human cellsQ29615384
Custom DNA-binding proteins come of age: polydactyl zinc-finger proteinsQ30699677
Scanning the human genome with combinatorial transcription factor libraries.Q30887293
Human zinc fingers as building blocks in the construction of artificial transcription factors.Q30887297
Comprehensive DNA recognition through concerted interactions from adjacent zinc fingersQ32028923
Genetic reprogramming of tumor cells by zinc finger transcription factorsQ33221141
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.Q33280963
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.Q33285803
Engineering Cys2His2 zinc finger domains using a bacterial cell-based two-hybrid selection systemQ33322077
Modulation of drug resistance by artificial transcription factors.Q33322421
Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).Q33406501
Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domainsQ33786657
Targeted mutagenesis using zinc-finger nucleases in ArabidopsisQ33836378
Stimulation of homologous recombination through targeted cleavage by chimeric nucleasesQ33927812
Custom-designed zinc finger nucleases: what is next?Q34067230
Regulation of transgene expression in plants with polydactyl zinc finger transcription factorsQ34192580
Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factorsQ34192593
Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavageQ34222841
Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cellsQ34353549
Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding siteQ34434986
Design, engineering, and characterization of zinc finger nucleasesQ34559924
Efficient gene targeting in Drosophila with zinc-finger nucleasesQ34588397
Critical parameters for genome editing using zinc finger nucleasesQ34592886
Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleasesQ34615432
Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cellsQ35133826
Targeted gene addition into a specified location in the human genome using designed zinc finger nucleasesQ35645641
Synergy between adjacent zinc fingers in sequence-specific DNA recognitionQ36152818
Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.Q36347830
Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases.Q36545930
Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.Q37018820
Synthesis of programmable integrasesQ37126112
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arraysQ37202413
The use of zinc finger peptides to study the role of specific factor binding sites in the chromatin environment.Q38288344
Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteinsQ38357603
Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin geneQ38473641
Expanding or restricting the target site repertoire of zinc-finger nucleases: the inter-domain linker as a major determinant of target site selectivityQ39500874
Comparison of zinc finger nucleases for use in gene targeting in mammalian cellsQ40003411
DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleasesQ40047890
Mammalian gene targeting with designed zinc finger nucleasesQ40371944
Activation of vascular endothelial growth factor A transcription in tumorigenic glioblastoma cell lines by an enhancer with cell type-specific DNase I accessibilityQ40742581
Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A.Q40832375
Induction of angiogenesis in a mouse model using engineered transcription factorsQ42808653
P433issue10
P921main subjectopen-source softwareQ1130645
P304page(s)1471-1501
P577publication date2009-09-17
P1433published inNature ProtocolsQ3337109
P1476titleOligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays
P478volume4

Reverse relations

cites work (P2860)
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