Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information

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Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information is …
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scholarly articleQ13442814

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P356DOI10.1016/J.VIROL.2012.10.003
P698PubMed publication ID23123013
P5875ResearchGate publication ID232811633

P50authorEmmanuelle CharpentierQ17280087
Peter FineranQ42092554
P2860cites workCsy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticumQ52422407
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein.Q52422434
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomesQ21090166
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of actionQ21203780
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeatsQ21284230
CRISPR Provides Acquired Resistance Against Viruses in ProkaryotesQ21508827
Virioplankton: Viruses in Aquatic EcosystemsQ22061799
CRISPR-based adaptive immune systemsQ24609425
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase IIIQ24628207
A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial ImmunityQ24669850
Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene productQ24679073
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeatsQ27650625
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotesQ27653417
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defenseQ27655927
Sequence- and Structure-Specific RNA Processing by a CRISPR EndonucleaseQ27664403
Structure of a CRISPR-associated protein Cas2 fromDesulfovibrio vulgarisQ27666215
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repairQ27666531
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)Q27667493
Structural and Biochemical Analysis of Nuclease Domain of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Protein 3 (Cas3)Q27670901
Cas5d Protein Processes Pre-crRNA and Assembles into a Cascade-like Interference Complex in Subtype I-C/Dvulg CRISPR-Cas SystemQ27670930
Ecology of prokaryotic virusesQ28258560
Small CRISPR RNAs guide antiviral defense in prokaryotesQ28290898
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNAQ28297640
In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas SystemQ28485452
RNA-guided genetic silencing systems in bacteria and archaeaQ29614421
CRISPR/Cas, the immune system of bacteria and archaeaQ29614423
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elementsQ29615788
Evolution and classification of the CRISPR-Cas systemsQ29616645
Phage response to CRISPR-encoded resistance in Streptococcus thermophilusQ29617060
Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophagesQ37955485
Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.Q41446390
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phagesQ41584259
CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection.Q41894905
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludisQ41995245
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3Q42128481
The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.Q46482246
Long tandemly repeated repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC 7120.Q48063355
The rise and fall of CRISPRs – dynamics of spacer acquisition and lossQ50946708
Comparative analysis of CRISPR loci in lactic acid bacteria genomesQ52422277
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal originQ29617073
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaeaQ29617488
Structures of the RNA-guided surveillance complex from a bacterial immune systemQ30587075
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and SalmonellaQ33608753
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systemsQ33960829
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.Q33985645
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeatsQ34004457
Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilusQ34008610
Bacteriophage resistance mechanismsQ34021879
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time.Q34024986
CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulationQ34068759
CRISPR/Cas system and its role in phage-bacteria interactionsQ34119422
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune systemQ34166291
Structural basis for CRISPR RNA-guided DNA recognition by CascadeQ34175461
Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing siteQ34240056
CRISPR interference directs strand specific spacer acquisitionQ34256881
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coliQ34259727
Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coliQ34286625
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity systemQ34287113
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms.Q34290429
Double-stranded Endonuclease Activity in Bacillus halodurans Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated Cas2 ProteinQ34297176
Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing methodQ34323913
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coliQ34631401
CRISPR: New Horizons in Phage Resistance and Strain IdentificationQ34634890
On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typingQ34682070
Virus population dynamics and acquired virus resistance in natural microbial communitiesQ34780702
Short motif sequences determine the targets of the prokaryotic CRISPR defence systemQ34953078
SSO1450--a CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA.Q34980083
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactionsQ35064344
Bacteriophage genomicsQ35565615
Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interferenceQ35626315
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary viromeQ35896326
Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenaxQ35943228
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domainQ36458420
CRISPR-based adaptive and heritable immunity in prokaryotesQ37568446
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectCRISPRQ412563
P304page(s)202-209
P577publication date2012-11-02
P1433published inVirologyQ7934867
P1476titleMemory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information
P478volume434

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