Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

scientific article published on 8 August 2012

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKS737
P932PMC publication ID3479195
P698PubMed publication ID22879377
P5875ResearchGate publication ID230645545

P50authorRolf BackofenQ2163211
Lennart RandauQ56547329
Judith ZoephelQ47545594
P2093author name stringDaniel Maticzka
Hagen Richter
Jeanette Schermuly
Judith Zoephel
P2860cites workI-TASSER server for protein 3D structure predictionQ21284202
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeatsQ21284230
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein.Q52422434
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic propertiesQ34951113
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactionsQ35064344
Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenaxQ35943228
The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complexQ36032844
Methanogens and the diversity of archaebacteriaQ37063211
CRISPR-based adaptive and heritable immunity in prokaryotesQ37568446
A universal method to produce in vitro transcripts with homogeneous 3' endsQ39616026
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3Q42128481
Hydrolysis of dilute acid pretreated mixed hardwood and purified microcrystalline cellulose by cell-free broth from Clostridium thermocellum.Q43024849
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.Q45250186
CRISPR Provides Acquired Resistance Against Viruses in ProkaryotesQ21508827
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary informationQ24602467
I-TASSER: a unified platform for automated protein structure and function predictionQ24605680
CRISPR-based adaptive immune systemsQ24609425
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase IIIQ24628207
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotesQ27653417
Sequence- and Structure-Specific RNA Processing by a CRISPR EndonucleaseQ27664403
Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and CleavageQ27666877
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)Q27667493
An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3Q27667849
Recognition and maturation of effector RNAs in a CRISPR interference pathwayQ27667851
Structural and Biochemical Analysis of Nuclease Domain of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Protein 3 (Cas3)Q27670901
Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral ImmunityQ27676627
Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing ComplexQ27677966
Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNAQ27678649
Clustal W and Clustal X version 2.0Q27860517
DaliLite workbench for protein structure comparisonQ27860897
CRISPR/Cas, the immune system of bacteria and archaeaQ29614423
CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaeaQ29614740
Evolution and classification of the CRISPR-Cas systemsQ29616645
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal originQ29617073
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeatsQ33350195
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitroQ33552459
CRISPR-Cas: an adaptive immunity system in prokaryotesQ33607825
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune systemQ34166291
Structural basis for CRISPR RNA-guided DNA recognition by CascadeQ34175461
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequenceQ34190309
Binding and cleavage of CRISPR RNA by Cas6Q34210424
Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.Q34245546
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coliQ34631401
CRISPR: new horizons in phage resistance and strain identificationQ34634890
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue19
P407language of work or nameEnglishQ1860
P921main subjectCRISPRQ412563
Acetivibrio thermocellusQ3681172
P304page(s)9887-9896
P577publication date2012-08-08
P1433published inNucleic Acids ResearchQ135122
P1476titleCharacterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
P478volume40

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cites work (P2860)
Q36772374A Non-Stem-Loop CRISPR RNA Is Processed by Dual Binding Cas6.
Q90265541A Simple Criterion for Inferring CRISPR Array Direction
Q52431158A Small RNA Isolation and Sequencing Protocol and Its Application to Assay CRISPR RNA Biogenesis in Bacteria.
Q42005996A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii
Q34322670A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.
Q53702835A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.
Q42055024An active immune defense with a minimal CRISPR (clustered regularly interspaced short palindromic repeats) RNA and without the Cas6 protein
Q43097718An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference.
Q92040652Approaches to study CRISPR RNA biogenesis and the key players involved
Q59356236Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity
Q51743000Biochemical analysis of the Cas6-1 RNA endonuclease associated with the subtype I-D CRISPR-Cas system in Synechocystis sp. PCC 6803.
Q26853377Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
Q38077262C/D box sRNA, CRISPR RNA and tRNA processing in an archaeon with a minimal fragmented genome
Q35752735C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules
Q91996453CRISPR Genome Editing Systems in the Genus Clostridium: a Timely Advancement
Q26824296CRISPR interference: a structural perspective
Q40585694CRISPR-Cas Systems Optimize Their Immune Response by Specifying the Site of Spacer Integration
Q28069426CRISPR-Cas: biology, mechanisms and relevance
Q27027325CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus
Q37079810CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.
Q28679191CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
Q42848311CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
Q36581178Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei
Q31096987Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic data
Q47441552Class 2 CRISPR-Cas RNA-guided endonucleases: Swiss Army knives of genome editing
Q37359961Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.
Q47820998Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) RNAs in the Porphyromonas gingivalis CRISPR-Cas I-C System.
Q41840786Comparative analysis ofCas6b processing and CRISPR RNA stability.
Q33617186Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia
Q41627154Coupling transcriptional activation of CRISPR-Cas system and DNA repair genes by Csa3a in Sulfolobus islandicus
Q38282014Cutting it close: CRISPR-associated endoribonuclease structure and function
Q38454128DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes
Q28542520DNA binding properties of the small cascade subunit Csa5
Q92344201Development of both type I-B and type II CRISPR/Cas genome editing systems in the cellulolytic bacterium Clostridium thermocellum
Q41863092Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B.
Q38121774Exploiting CRISPR/Cas: interference mechanisms and applications.
Q34314875Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems.
Q36017330Function of the CRISPR-Cas System of the Human Pathogen Clostridium difficile.
Q35865998Functional Analysis of Porphyromonas gingivalis W83 CRISPR-Cas Systems.
Q41968713Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus.
Q41117712Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum
Q34722556Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile.
Q39094838In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex.
Q42592480Interference activity of a minimal Type I CRISPR-Cas system from Shewanella putrefaciens
Q38057517Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information
Q40662616Modulating the Cascade architecture of a minimal Type I-F CRISPR-Cas system
Q91254459Molecular mechanisms of CRISPR-Cas spacer acquisition
Q64056373Origins and evolution of CRISPR-Cas systems
Q39289070Plasticity of archaeal C/D box sRNA biogenesis
Q37079815Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis
Q27011249Progress and prospects of engineered sequence-specific DNA modulating technologies for the management of liver diseases
Q28649354RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
Q27676664Recognition and Cleavage of a Nonstructured CRISPR RNA by Its Processing Endoribonuclease Cas6
Q90299131Selective Maintenance of Multiple CRISPR Arrays Across Prokaryotes
Q34860823Structural Principles of CRISPR RNA Processing
Q47132073Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs
Q28818412Structure Principles of CRISPR-Cas Surveillance and Effector Complexes
Q27680458Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3
Q27677046Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing
Q34394269TALEN and CRISPR/Cas Genome Editing Systems: Tools of Discovery.
Q38360348The Adaptive Immune System of Haloferax volcanii
Q51148515The Biology of CRISPR-Cas: Backward and Forward.
Q36706289The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae
Q52323301The nuts and bolts of the Haloferax CRISPR-Cas system I-B.
Q34044491The role of Cas8 in type I CRISPR interference.
Q89766835The size of the immune repertoire of bacteria
Q42219752The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus
Q41904442Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III.
Q41898322Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus
Q42544865crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus
Q36923603pNEB193-derived suicide plasmids for gene deletion and protein expression in the methane-producing archaeon, Methanosarcina acetivorans

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