RBR E3-ligases at work

scientific article published on 27 January 2014

RBR E3-ligases at work is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/EMBR.201338166
P932PMC publication ID3989860
P698PubMed publication ID24469331

P50authorTitia SixmaQ21402771
P2093author name stringJudith J Smit
P2860cites workRecruitment of the linear ubiquitin chain assembly complex stabilizes the TNF-R1 signaling complex and is required for TNF-mediated gene inductionQ22001513
Cloning and characterization of human prostate coactivator ARA54, a novel protein that associates with the androgen receptorQ22009068
TRIADs: a new class of proteins with a novel cysteine-rich signatureQ22010435
The ubiquitin-conjugating enzymes UbcH7 and UbcH8 interact with RING finger/IBR motif-containing domains of HHARI and H7-AP1Q22010656
Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligaseQ22254584
Parkin functions as an E2-dependent ubiquitin- protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1Q24290518
A novel centrosomal ring-finger protein, dorfin, mediates ubiquitin ligase activityQ24290890
Features of the parkin/ariadne-like ubiquitin ligase, HHARI, that regulate its interaction with the ubiquitin-conjugating enzyme, Ubch7Q24291032
N-Terminally extended human ubiquitin-conjugating enzymes (E2s) mediate the ubiquitination of RING-finger proteins, ARA54 and RNF8Q24291166
An unfolded putative transmembrane polypeptide, which can lead to endoplasmic reticulum stress, is a substrate of ParkinQ24291412
LUBAC synthesizes linear ubiquitin chains via a thioester intermediateQ24293061
The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesisQ24293633
TRIAD1 inhibits MDM2‐mediated p53 ubiquitination and degradationQ24293959
OTULIN antagonizes LUBAC signaling by specifically hydrolyzing Met1-linked polyubiquitinQ24294696
Mutations in the intellectual disability gene Ube2a cause neuronal dysfunction and impair parkin-dependent mitophagyQ39150269
Linear ubiquitination of NEMO negatively regulates the interferon antiviral response through disruption of the MAVS-TRAF3 complexQ39295722
E3 ubiquitin ligase RNF31 cooperates with DAX-1 in transcriptional repression of steroidogenesisQ39880486
Identification of ubiquitin ligase activity of RBCK1 and its inhibition by splice variant RBCK2 and protein kinase Cbeta.Q40008621
Functional modulation of parkin through physical interaction with SUMO-1.Q40235074
A regulated interaction with the UIM protein Eps15 implicates parkin in EGF receptor trafficking and PI(3)K-Akt signallingQ40252247
Transcription factor single-minded 2 (SIM2) is ubiquitinated by the RING-IBR-RING-type E3 ubiquitin ligasesQ40408101
Parkin facilitates the elimination of expanded polyglutamine proteins and leads to preservation of proteasome function.Q40658225
Parkin prevents mitochondrial swelling and cytochrome c release in mitochondria-dependent cell death.Q40670474
Ubiquitination of a new form of alpha-synuclein by parkin from human brain: implications for Parkinson's diseaseQ40795664
The E3 ligase HOIP specifies linear ubiquitin chain assembly through its RING-IBR-RING domain and the unique LDD extension.Q41774507
Identification of the ubiquitin ligase Triad1 as a regulator of endosomal transportQ42013252
Analysis of nuclear factor-κB (NF-κB) essential modulator (NEMO) binding to linear and lysine-linked ubiquitin chains and its role in the activation of NF-κB.Q42043277
Comparative genomics of the RBR family, including the Parkinson's disease-related gene parkin and the genes of the ariadne subfamilyQ42049727
The familial Parkinson disease gene PARK2 is a multisite tumor suppressor on chromosome 6q25.2-27 that regulates cyclin E.Q42534456
Target specificity of the E3 ligase LUBAC for ubiquitin and NEMO relies on different minimal requirements.Q42925205
S-nitrosylation regulates mitochondrial quality control via activation of parkinQ43090462
Downregulation of uridine-cytidine kinase like-1 decreases proliferation and enhances tumor susceptibility to lysis by apoptotic agents and natural killer cellsQ43298963
Hox‐mediated regulation of doublesex sculpts sex‐specific abdomen morphology in DrosophilaQ43867627
Alpha-synuclein and parkin contribute to the assembly of ubiquitin lysine 63-linked multiubiquitin chainsQ45271574
Ubiquitin in the immune systemQ46551356
Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34.Q46711534
Spontaneous mutations in the mouse Sharpin gene result in multiorgan inflammation, immune system dysregulation and dermatitis.Q48151205
Understanding cell death in parkinson's diseaseQ48389460
Neddylation positively regulates the ubiquitin E3 ligase activity of parkinQ48695224
Identification of molecular determinants required for interaction of ubiquitin‐conjugating enzymes and RING finger proteinsQ77231665
Diverse effects of pathogenic mutations of Parkin that catalyze multiple monoubiquitylation in vitroQ81597727
Parkin mediates nonclassical, proteasomal-independent ubiquitination of synphilin-1: implications for Lewy body formationQ24296620
OTULIN restricts Met1-linked ubiquitination to control innate immune signalingQ24296844
Parkin is a component of an SCF-like ubiquitin ligase complex and protects postmitotic neurons from kainate excitotoxicityQ24297369
Linear ubiquitination prevents inflammation and regulates immune signallingQ24298581
SHARPIN is a component of the NF-κB-activating linear ubiquitin chain assembly complexQ24298605
SHARPIN forms a linear ubiquitin ligase complex regulating NF-κB activity and apoptosisQ24298626
Structure of the C-terminal RING finger from a RING-IBR-RING/TRIAD motif reveals a novel zinc-binding domain distinct from a RINGQ24298636
Human homologue of ariadne promotes the ubiquitylation of translation initiation factor 4E homologous protein, 4EHPQ24299901
A20 inhibits LUBAC-mediated NF-κB activation by binding linear polyubiquitin chains via its zinc finger 7Q24300148
UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybridsQ24300880
Mitofusin 1 and mitofusin 2 are ubiquitinated in a PINK1/parkin-dependent manner upon induction of mitophagyQ24300975
Parkin Mono-ubiquitinates Bcl-2 and Regulates AutophagyQ24301563
The p53-inducible E3 ubiquitin ligase p53RFP induces p53-dependent apoptosisQ24301611
Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiencyQ24301912
A ubiquitin ligase complex assembles linear polyubiquitin chainsQ24305030
Autoregulation of Parkin activity through its ubiquitin-like domainQ24307382
Ubiquitin binding mediates the NF-kappaB inhibitory potential of ABIN proteinsQ24307510
p53RFP, a p53-inducible RING-finger protein, regulates the stability of p21WAF1Q24307639
Mutations in the parkin gene cause autosomal recessive juvenile parkinsonismQ24309753
The ubiquitin ligase Triad1 inhibits myelopoiesis through UbcH7 and Ubc13 interacting domainsQ24311700
Phosphorylation of parkin by Parkinson disease-linked kinase PINK1 activates parkin E3 ligase function and NF-kappaB signalingQ24313304
Involvement of linear polyubiquitylation of NEMO in NF-kappaB activationQ24315943
The Parkinson's disease-linked proteins Fbxo7 and Parkin interact to mediate mitophagyQ24316726
Parkin is recruited selectively to impaired mitochondria and promotes their autophagyQ24317471
The E3 ubiquitin-protein ligase Triad1 inhibits clonogenic growth of primary myeloid progenitor cellsQ24317495
The E3 ligase parkin maintains mitochondrial integrity by increasing linear ubiquitination of NEMOQ24321825
A human protein-protein interaction network: a resource for annotating the proteomeQ24324450
A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome systemQ24336529
NK lytic-associated molecule, involved in NK cytotoxic function, is an E3 ligaseQ24337285
TRIAD1 and HHARI bind to and are activated by distinct neddylated Cullin-RING ligase complexesQ24337489
HOIL-1L interacting protein (HOIP) as an NF-kappaB regulating component of the CD40 signaling complexQ24338233
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction networkQ24338947
Ariadne-1: a vital Drosophila gene is required in development and defines a new conserved family of ring-finger proteinsQ24548126
Differential expression of homeobox genes in functionally distinct CD34+ subpopulations of human bone marrow cellsQ24564511
Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34Q24602536
Structural basis for autoinhibition and phosphorylation-dependent activation of c-CblQ24621898
Localization of a gene for an autosomal recessive form of juvenile Parkinsonism to chromosome 6q25.2-27Q24680250
Ubiquitin in the immune systemQ26998711
Mechanistic insights into active site-associated polyubiquitination by the ubiquitin-conjugating enzyme Ube2g2Q27653834
Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activationQ27654230
Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysisQ27670947
Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complexQ27675967
Structure of HHARI, a RING-IBR-RING Ubiquitin Ligase: Autoinhibition of an Ariadne-Family E3 and Insights into Ligation MechanismQ27678298
Electron microscopy structure of human APC/CCDH1–EMI1 reveals multimodal mechanism of E3 ligase shutdownQ27678304
Structure of the human Parkin ligase domain in an autoinhibited stateQ27678455
Structure and function of Parkin E3 ubiquitin ligase reveals aspects of RING and HECT ligasesQ27678625
A molecular explanation for the recessive nature of parkin-linked Parkinson’s diseaseQ27678628
Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIPQ27680404
Structure of parkin reveals mechanisms for ubiquitin ligase activationQ27684576
The Parkin-Like Human Homolog of Drosophila Ariadne-1 (HHARI) Can Induce Aggresome Formation in Mammalian Cells and Is Immunologically Detectable in Lewy BodiesQ28117293
Human Homolog of Drosophila Ariadne (HHARI) is a marker of cellular proliferation associated with nuclear bodiesQ28119176
Expression of HOX genes, HOX cofactors, and MLL in phenotypically and functionally defined subpopulations of leukemic and normal human hematopoietic cellsQ28137796
Dorfin Localizes to Lewy Bodies and Ubiquitylates Synphilin-1Q28204442
Gfi1 ubiquitination and proteasomal degradation is inhibited by the ubiquitin ligase Triad1Q28237491
S-nitrosylation of parkin regulates ubiquitination and compromises parkin's protective functionQ28258212
???Q64860635
Triad3A, an E3 ubiquitin-protein ligase regulating Toll-like receptorsQ28258400
Parkin-mediated K63-linked polyubiquitination targets misfolded DJ-1 to aggresomes via binding to HDAC6Q28397050
ARIH2 is essential for embryogenesis, and its hematopoietic deficiency causes lethal activation of the immune systemQ28593507
Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarizationQ29615622
Drosophila parkin requires PINK1 for mitochondrial translocation and ubiquitinates mitofusinQ29615625
PINK1 is activated by mitochondrial membrane potential depolarization and stimulates Parkin E3 ligase activity by phosphorylating Serine 65Q29622844
E3 ubiquitin-protein ligase activity of Parkin is dependent on cooperative interaction of RING finger (TRIAD) elementsQ30713868
Parkin mediates apparent E2-independent monoubiquitination in vitro and contains an intrinsic activity that catalyzes polyubiquitination.Q33916165
PARK2 deletions occur frequently in sporadic colorectal cancer and accelerate adenoma development in Apc mutant mice.Q34093865
Dorfin ubiquitylates mutant SOD1 and prevents mutant SOD1-mediated neurotoxicityQ34141572
Parc: a cytoplasmic anchor for p53.Q34170344
The p38 subunit of the aminoacyl-tRNA synthetase complex is a Parkin substrate: linking protein biosynthesis and neurodegeneration.Q34202584
Mitochondrial hexokinase HKI is a novel substrate of the Parkin ubiquitin ligaseQ34306228
PINK1 drives Parkin self-association and HECT-like E3 activity upstream of mitochondrial bindingQ34322599
Biochemical analysis of Parkinson's disease-causing variants of Parkin, an E3 ubiquitin-protein ligase with monoubiquitylation capacityQ34528753
Gene expression profiling of acute myeloid leukemia with translocation t(8;16)(p11;p13) and MYST3-CREBBP rearrangement reveals a distinctive signature with a specific pattern of HOX gene expression.Q34569216
Novel Regulation of Parkin Function through c-Abl-Mediated Tyrosine Phosphorylation: Implications for Parkinson's DiseaseQ34577087
Linear Ubiquitin Assembly Complex Negatively Regulates RIG-I- and TRIM25-Mediated Type I Interferon InductionQ34760296
HoxA10 Influences Protein Ubiquitination by Activating Transcription of ARIH2, the Gene Encoding Triad1Q34947670
Oxidative modifications of alpha-synuclein.Q35170996
Parkin mediates the degradation-independent ubiquitination of Hsp70Q35609973
Parkin and relatives: the RBR family of ubiquitin ligasesQ35777606
Structure of an E3:E2~Ub complex reveals an allosteric mechanism shared among RING/U-box ligases.Q36291328
PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagyQ36476931
The ring between ring fingers (RBR) protein familyQ36762636
Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chainsQ37191956
The ubiquitin ligase parkin mediates resistance to intracellular pathogensQ37458253
MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemiaQ38294261
P433issue2
P304page(s)142-154
P577publication date2014-01-27
P1433published inEMBO ReportsQ5323356
P1476titleRBR E3-ligases at work
P478volume15

Reverse relations

cites work (P2860)
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Q39265294Linear ubiquitin chains: enzymes, mechanisms and biology
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Q26751380Ubiquitin modifications
Q36410188Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners
Q39033646Ubiquitination and the Regulation of Membrane Proteins
Q42113382Ubiquitination of ERMES components by the E3 ligase Rsp5 is involved in mitophagy
Q55328184Ubiquitination regulation of inflammatory responses through NF-κB pathway.

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