Prediction of the repeat domain structures and impact of parkinsonism-associated variations on structure and function of all functional domains of leucine-rich repeat kinase 2 (LRRK2).

scientific article published on 24 February 2014

Prediction of the repeat domain structures and impact of parkinsonism-associated variations on structure and function of all functional domains of leucine-rich repeat kinase 2 (LRRK2). is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/HUMU.22515
P698PubMed publication ID24470158
P5875ResearchGate publication ID259956808

P50authorFei LiuQ51829849
Terrence D. MulhernQ54965497
Heung-Chin ChengQ43053494
P2093author name stringJanetta G Culvenor
Ryan D Mills
P2860cites workGTPase activity and neuronal toxicity of Parkinson's disease-associated LRRK2 is regulated by ArfGAP1Q21144926
JNKK1 organizes a MAP kinase module through specific and sequential interactions with upstream and downstream components mediated by its amino-terminal extensionQ22007973
Genetic etiology of Parkinson disease associated with mutations in the SNCA, PARK2, PINK1, PARK7, and LRRK2 genes: a mutation updateQ22252904
Parkinson's disease-associated mutations in leucine-rich repeat kinase 2 augment kinase activityQ22254785
LRRK2 controls synaptic vesicle storage and mobilization within the recycling poolQ24292798
MKK6 binds and regulates expression of Parkinson's disease-related protein LRRK2Q24294736
GTP binding is essential to the protein kinase activity of LRRK2, a causative gene product for familial Parkinson's diseaseQ24294785
Biochemical characterization of highly purified leucine-rich repeat kinases 1 and 2 demonstrates formation of homodimersQ24298093
LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosisQ24299176
LRRK2 and the stress response: interaction with MKKs and JNK-interacting proteinsQ24300440
Kinase activity of mutant LRRK2 mediates neuronal toxicityQ24303603
ARHGEF7 (Beta-PIX) acts as guanine nucleotide exchange factor for leucine-rich repeat kinase 2Q24305448
Dynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesionQ24305940
GTPase activity regulates kinase activity and cellular phenotypes of Parkinson's disease-associated LRRK2Q24306167
LRRK2 directly phosphorylates Akt1 as a possible physiological substrate: Impairment of the kinase activity by Parkinson's disease-associated mutationsQ24306239
Insight into the mode of action of the LRRK2 Y1699C pathogenic mutantQ24306788
ArfGAP1 Is a GTPase Activating Protein for LRRK2: Reciprocal Regulation of ArfGAP1 by LRRK2Q24307742
Lrrk2 phosphorylates alpha synuclein at serine 129: Parkinson disease implicationsQ24310608
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complexQ24310859
The Parkinson's disease kinase LRRK2 autophosphorylates its GTPase domain at multiple sitesQ24313336
Membrane localization of LRRK2 is associated with increased formation of the highly active LRRK2 dimer and changes in its phosphorylationQ24316270
Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4aQ24316348
Neurodegenerative Diseases: Challenges And OpportunitiesQ51563574
A developmental and molecular analysis of Cdc2 mutations in Drosophila melanogasterQ52223574
Expression, purification and preliminary biochemical and structural characterization of the leucine rich repeat namesake domain of leucine rich repeat kinase 2.Q54344107
Expression, purification and preliminary biochemical studies of the N-terminal domain of leucine-rich repeat kinase 2.Q54672638
LRRK2 mutation analysis in Parkinson disease families with evidence of linkage to PARK8.Q54697490
Investigation of leucine-rich repeat kinase 2 : enzymological properties and novel assays.Q54781213
Genotypic and phenotypic characteristics of Dutch patients with early onset Parkinson's disease.Q54791937
Mechanistic insight into the dominant mode of the Parkinson's disease-associated G2019S LRRK2 mutationQ57373779
Lrrk2 pathogenic substitutions in Parkinson's diseaseQ57983291
A frequent LRRK2 gene mutation associated with autosomal dominant Parkinson's diseaseQ58870346
Effector recognition by the small GTP-binding proteins Ras and RalQ77863480
Screening for SNCA and LRRK2 mutations in Greek sporadic and autosomal dominant Parkinson's disease: identification of two novel LRRK2 variantsQ79555494
Independent occurrence of I2020T mutation in the kinase domain of the leucine rich repeat kinase 2 gene in Japanese and German Parkinson's disease familiesQ80064503
The Parkinson disease gene LRRK2: evolutionary and structural insightsQ80243997
Comprehensive analysis of LRRK2 in publicly available Parkinson's disease cases and neurologically normal controlsQ80535570
Crystal structure of the biglycan dimer and evidence that dimerization is essential for folding and stability of class I small leucine-rich repeat proteoglycansQ82877699
A common missense variant in the LRRK2 gene, Gly2385Arg, associated with Parkinson's disease risk in TaiwanQ83191880
LRRK2 Kinase Regulates Synaptic Morphology through Distinct Substrates at the Presynaptic and Postsynaptic Compartments of theDrosophilaNeuromuscular JunctionQ24316894
Identification of protein phosphatase 1 as a regulator of the LRRK2 phosphorylation cycleQ24317158
The Parkinson disease-associated leucine-rich repeat kinase 2 (LRRK2) is a dimer that undergoes intramolecular autophosphorylationQ24318533
Interplay of LRRK2 with chaperone-mediated autophagyQ24322747
The G2385R variant of leucine-rich repeat kinase 2 associated with Parkinson's disease is a partial loss-of-function mutationQ24324345
LRRK2 regulates synaptic vesicle endocytosisQ24336523
Vaccinia-related kinase 2 modulates the stress response to hypoxia mediated by TAK1Q24337845
Parkinson's disease-associated mutations in LRRK2 link enhanced GTP-binding and kinase activities to neuronal toxicityQ24338647
14-3-3 binding to LRRK2 is disrupted by multiple Parkinson's disease-associated mutations and regulates cytoplasmic localizationQ24339094
Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family.Q24535966
Crystal structure of a 12 ANK repeat stack from human ankyrinR.Q24539221
Structural basis of inhibition of CDK-cyclin complexes by INK4 inhibitorsQ24597269
Ras-catalyzed hydrolysis of GTP: a new perspective from model studiesQ24630231
Role of autophagy in G2019S-LRRK2-associated neurite shortening in differentiated SH-SY5Y cellsQ24651391
Autoinhibition by an internal nuclear localization signal revealed by the crystal structure of mammalian importin alphaQ27617932
Crystallographic analysis of the specific yet versatile recognition of distinct nuclear localization signals by karyopherin alphaQ27622027
Crystal structure of a plant ribonuclease, RNase LEQ27622398
RanGAP mediates GTP hydrolysis without an arginine fingerQ27637706
The crystal structure of polygalacturonase-inhibiting protein (PGIP), a leucine-rich repeat protein involved in plant defenseQ27641788
Structure of a Fbw7-Skp1-cyclin E complex: multisite-phosphorylated substrate recognition by SCF ubiquitin ligasesQ27644446
Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPaseQ27649733
Structural basis of histone H4 recognition by p55Q27650473
Structure of the Roc–COR domain tandem of C. tepidum, a prokaryotic homologue of the human LRRK2 Parkinson kinaseQ27651307
Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1Q27661891
Dynamics connect substrate recognition to catalysis in protein kinase AQ27664877
Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of Sam68Q27675061
K-Ras(G12C) inhibitors allosterically control GTP affinity and effector interactionsQ27680654
Roco kinase structures give insights into the mechanism of Parkinson disease-related leucine-rich-repeat kinase 2 mutationsQ27681111
Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteinsQ27686798
Multiple Ras functions can contribute to mammalian cell transformationQ34319284
Sequences Located within the N-Terminus of the PD-Linked LRRK2 Lead to Increased Aggregation and Attenuation of 6-Hydroxydopamine-Induced Cell DeathQ34428227
Ankyrin repeat: a unique motif mediating protein-protein interactions.Q34592264
Expression analysis of Lrrk1, Lrrk2 and Lrrk2 splice variants in miceQ34723024
The leucine-rich repeat structure.Q34769694
Kinetic, mechanistic, and structural modeling studies of truncated wild-type leucine-rich repeat kinase 2 and the G2019S mutantQ35498549
Association of LRRK2 exonic variants with susceptibility to Parkinson's disease: a case-control studyQ35525896
Number and brightness analysis of LRRK2 oligomerization in live cellsQ36010883
The Parkinson's disease-associated protein, leucine-rich repeat kinase 2 (LRRK2), is an authentic GTPase that stimulates kinase activityQ36154267
(G2019S) LRRK2 activates MKK4-JNK pathway and causes degeneration of SN dopaminergic neurons in a transgenic mouse model of PD.Q36223954
The role of leucine-rich repeat kinase 2 (LRRK2) in Parkinson's diseaseQ36325701
A Drosophila model for LRRK2-linked parkinsonismQ36497497
Understanding and exploiting substrate recognition by protein kinasesQ36631005
Pathogenic mutations in Parkinson diseaseQ36770206
Inhibition of LRRK2 kinase activity leads to dephosphorylation of Ser(910)/Ser(935), disruption of 14-3-3 binding and altered cytoplasmic localizationQ36780383
A helix scaffold for the assembly of active protein kinasesQ36871421
LRRK2 GTPase dysfunction in the pathogenesis of Parkinson's diseaseQ36981223
Identification of compounds that inhibit the kinase activity of leucine-rich repeat kinase 2.Q37079316
Substrate specificity and inhibitors of LRRK2, a protein kinase mutated in Parkinson's diseaseQ37139305
Abnormal localization of leucine-rich repeat kinase 2 to the endosomal-lysosomal compartment in lewy body diseaseQ37402225
Parkin protects against LRRK2 G2019S mutant-induced dopaminergic neurodegeneration in Drosophila.Q37408628
Dependence of leucine-rich repeat kinase 2 (LRRK2) kinase activity on dimerizationQ37479332
Structural aspects of Rab6-effector complexesQ37597379
Defining the conserved internal architecture of a protein kinase.Q37625155
Through the "gatekeeper door": exploiting the active kinase conformationQ37650047
On the road to leucine-rich repeat kinase 2 signalling: evidence from cellular and in vivo studiesQ37856642
The Evolution of Protein Kinase Inhibitors from Antagonists to Agonists of Cellular SignalingQ37872771
Structure-Function Relationships of the G Domain, a Canonical Switch MotifQ37889983
Allostery and binding cooperativity of the catalytic subunit of protein kinase A by NMR spectroscopy and molecular dynamics simulations.Q38011292
Analysis of LRRK2 accessory repeat domains: prediction of repeat length, number and sites of Parkinson's disease mutationsQ38044435
Phosphorylation of LRRK2: from kinase to substrateQ38044439
Molecular basis for recognition of 2',5'-linked oligoadenylates by the N-terminal ankyrin repeat domain of human ribonuclease L.Q38306838
Structural basis for recognition of 2',5'-linked oligoadenylates by human ribonuclease L.Q38336230
Type II kinase inhibitors show an unexpected inhibition mode against Parkinson's disease-linked LRRK2 mutant G2019S.Q38520438
Screening for Lrrk2 G2019S and clinical comparison of Tunisian and North American Caucasian Parkinson's disease familiesQ39095724
Regulation and function of protein kinases and phosphatasesQ39802746
C-terminal truncation and Parkinson's disease-associated mutations down-regulate the protein serine/threonine kinase activity of PTEN-induced kinase-1.Q40285081
Therapeutic targeting of oncogenic K-Ras by a covalent catalytic site inhibitorQ41915120
Intramolecular activation mechanism of the Dictyostelium LRRK2 homolog Roco protein GbpC.Q42546197
Kinetic mechanistic studies of wild-type leucine-rich repeat kinase 2: characterization of the kinase and GTPase activitiesQ42737973
Re-examination of the dimerization state of leucine-rich repeat kinase 2: predominance of the monomeric formQ42803700
LRRK2 guides the actin cytoskeleton at growth cones together with ARHGEF7 and Tropomyosin 4.Q42812726
Chemoproteomics-based design of potent LRRK2-selective lead compounds that attenuate Parkinson's disease-related toxicity in human neuronsQ43120316
Phosphopeptide analysis reveals two discrete clusters of phosphorylation in the N-terminus and the Roc domain of the Parkinson-disease associated protein kinase LRRK2.Q43182013
Structure of the Roc–COR domain tandem of C. tepidum, a prokaryotic homologue of the human LRRK2 Parkinson kinaseQ46099711
Differential effects of familial parkinson mutations in LRRK2 revealed by a systematic analysis of autophosphorylationQ47835833
Ser1292 autophosphorylation is an indicator of LRRK2 kinase activity and contributes to the cellular effects of PD mutationsQ48252778
Analysis of LRRK2 functional domains in nondominant Parkinson diseaseQ50279256
Structural basis of Rho GTPase-mediated activation of the formin mDia1.Q50337106
A putative Ca2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbiosesQ51036725
F-Box Proteins Are Receptors that Recruit Phosphorylated Substrates to the SCF Ubiquitin-Ligase ComplexQ27934075
Mutations in LRRK2 cause autosomal-dominant parkinsonism with pleomorphic pathologyQ28131833
WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseasesQ28216786
LRRK2 in Parkinson's disease: protein domains and functional insightsQ28235024
Structural principles of leucine-rich repeat (LRR) proteinsQ28241151
Cloning of the gene containing mutations that cause PARK8-linked Parkinson's diseaseQ28292932
Structure of the armadillo repeat domain of plakophilin 1Q28303634
Identification and characterization of a leucine-rich repeat kinase 2 (LRRK2) consensus phosphorylation motifQ28475942
The IkappaB kinase family phosphorylates the Parkinson's disease kinase LRRK2 at Ser935 and Ser910 during Toll-like receptor signalingQ28480459
Phosphorylation-dependent 14-3-3 binding to LRRK2 is impaired by common mutations of familial Parkinson's diseaseQ28586694
Enhanced striatal dopamine transmission and motor performance with LRRK2 overexpression in mice is eliminated by familial Parkinson's disease mutation G2019SQ28589899
LRRK2 phosphorylates moesin at threonine-558: characterization of how Parkinson's disease mutants affect kinase activityQ29615144
Comparison of ARM and HEAT protein repeatsQ29616046
Mechanisms of specificity in protein phosphorylationQ29617541
Kinase activity is required for the toxic effects of mutant LRRK2/dardarinQ29620478
An LRRK2 mutation as a cause for the parkinsonism in the original PARK8 family.Q30350674
R1441C mutation in LRRK2 impairs dopaminergic neurotransmission in mice.Q30483115
A rapid method for determining protein kinase phosphorylation specificityQ31155056
Identification of a carboxyl-terminal diaphanous-related formin homology protein autoregulatory domainQ31465756
Type and frequency of mutations in the LRRK2 gene in familial and sporadic Parkinson's disease*.Q33226010
Mutations in the gene LRRK2 encoding dardarin (PARK8) cause familial Parkinson's disease: clinical, pathological, olfactory and functional imaging and genetic dataQ33226682
A common genetic factor for Parkinson disease in ethnic Chinese population in TaiwanQ33267533
The WD40 domain is required for LRRK2 neurotoxicityQ33521241
GTPase activity plays a key role in the pathobiology of LRRK2.Q33553458
Deletion of the WD40 domain of LRRK2 in Zebrafish causes Parkinsonism-like loss of neurons and locomotive defectQ33565399
Phosphorylation of ezrin/radixin/moesin proteins by LRRK2 promotes the rearrangement of actin cytoskeleton in neuronal morphogenesisQ33595218
Identification of a novel LRRK2 mutation linked to autosomal dominant parkinsonism: evidence of a common founder across European populationsQ33942173
Crystal structure of human toll-like receptor 3 (TLR3) ectodomainQ33987865
LRRK2 kinase activity is dependent on LRRK2 GTP binding capacity but independent of LRRK2 GTP bindingQ33999270
The importin β binding domain as a master regulator of nucleocytoplasmic transportQ34024480
Inhibitors of leucine-rich repeat kinase-2 protect against models of Parkinson's diseaseQ34112588
Reevaluation of phosphorylation sites in the Parkinson disease-associated leucine-rich repeat kinase 2Q34121655
A competitive nucleotide binding inhibitor: in vitro characterization of Rab7 GTPase inhibitionQ34225395
Roc, a Ras/GTPase domain in complex proteinsQ34280792
Role of LRRK2 kinase activity in the pathogenesis of Parkinson's diseaseQ34300430
P433issue4
P304page(s)395-412
P577publication date2014-02-24
P1433published inHuman MutationQ5937269
P1476titlePrediction of the repeat domain structures and impact of parkinsonism-associated variations on structure and function of all functional domains of leucine-rich repeat kinase 2 (LRRK2).
P478volume35

Reverse relations

cites work (P2860)
Q26746897Activation Mechanism of LRRK2 and Its Cellular Functions in Parkinson's Disease
Q92534986Autophagy and LRRK2 in the Aging Brain
Q38619109Cryo-EM analysis of homodimeric full-length LRRK2 and LRRK1 protein complexes
Q58701452LRRK2 kinase regulates α-synuclein propagation via RAB35 phosphorylation
Q38253871LRRK2 pathobiology in Parkinson's disease
Q24306357LRRK2 transport is regulated by its novel interacting partner Rab32
Q89947277Parkinson's disease-associated kinase LRRK2 regulates genes required for cell adhesion, polarization, and chemotaxis in activated murine macrophages
Q38213378Structural biology of the LRRK2 GTPase and kinase domains: implications for regulation
Q42342648Synapses in neurodegenerative diseases
Q38482479The Role of α-Synuclein and LRRK2 in Tau Phosphorylation

Search more.