Genetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea

scientific article published on 27 February 2017

Genetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea is …
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scholarly articleQ13442814

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P356DOI10.1007/S11427-016-0355-8
P698PubMed publication ID28251462

P50authorQunxin SheQ30439305
P2093author name stringNan Peng
Wenyuan Han
Yingjun Li
Yunxiang Liang
P2860cites workPatterns of gene flow define species of thermophilic ArchaeaQ21145744
The Genome of Sulfolobus acidocaldarius, a Model Organism of the CrenarchaeotaQ22065449
Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction StudiesQ22065480
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeonQ22065946
Complete Genome Sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7Q22066062
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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and EucaryaQ22066209
The complete genome of the crenarchaeon Sulfolobus solfataricus P2Q22066249
Biogeography of the Sulfolobus islandicus pan-genomeQ22066289
A korarchaeal genome reveals insights into the evolution of the ArchaeaQ22066313
Complex archaea that bridge the gap between prokaryotes and eukaryotesQ22809057
Insights into the phylogeny and coding potential of microbial dark matterQ24490632
Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by matingQ24671302
Rooting the domain archaea by phylogenomic analysis supports the foundation of the new kingdom ProteoarchaeotaQ26782023
CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus SulfolobusQ27027325
Structural insight into dynamic bypass of the major cisplatin-DNA adduct by Y-family polymerase Dpo4Q27662057
C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor familyQ27666459
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)Q27667493
Structural and functional studies of Stf76 from the Sulfolobus islandicus plasmid-virus pSSVx: a novel peculiar member of the winged helix-turn-helix transcription factor familyQ27682683
The DNA repair helicases XPD and FancJ have essential iron-sulfur domainsQ27932999
Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperatureQ28242698
Efficient 5'-3' DNA end resection by HerA and NurA is essential for cell viability in the crenarchaeon Sulfolobus islandicusQ28260585
DNA Processing Proteins Involved in the UV-Induced Stress Response of SulfolobalesQ28264639
RNA-guided genetic silencing systems in bacteria and archaeaQ29614421
Complete nucleotide sequence of the Sulfolobus islandicus multicopy plasmid pRN1.Q42633950
Identification of the minimal replicon and the origin of replication of the crenarchaeal plasmid pRN1.Q42673870
pIT3, a cryptic plasmid isolated from the hyperthermophilic crenarchaeon Sulfolobus solfataricus IT3.Q42683491
Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestryQ42686821
Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeonQ42686824
Two novel conjugative plasmids from a single strain of SulfolobusQ42689642
Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistanceQ42845404
Transcription termination in the plasmid/virus hybrid pSSVx from Sulfolobus islandicusQ42928229
Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus.Q43019254
Genetic analysis of the Holliday junction resolvases Hje and Hjc in Sulfolobus islandicusQ43023934
Shuttle vectors for hyperthermophilic archaeaQ43025518
Genetic elements in the extremely thermophilic archaeon SulfolobusQ43025837
Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicusQ43026895
Knockout and functional analysis of two DExD/H-box family helicase genes in Sulfolobus islandicus REY15A.Q43027686
Distinct catalytic activity and in vivo roles of the ExoIII and EndoIV AP endonucleases from Sulfolobus islandicusQ43028137
Single-stranded DNA binding activity of XPBI, but not XPBII, from Sulfolobus tokodaii causes double-stranded DNA meltingQ43029877
Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanicaQ43031793
Exceptional thermal stability and organic solvent tolerance of an esterase expressed from a thermophilic hostQ43032294
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2.Q43033575
An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference.Q43097718
An upstream activation element exerting differential transcriptional activation on an archaeal promoterQ43264415
Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the crenarchaeon Sulfolobus solfataricusQ43660592
A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vectorQ44465855
A broadly applicable gene knockout system for the thermoacidophilic archaeon Sulfolobus islandicus based on simvastatin selectionQ45891259
Agmatine is essential for the cell growth of Thermococcus kodakaraensisQ46430213
Knockouts of RecA-like proteins RadC1 and RadC2 have distinct responses to DNA damage agents in Sulfolobus islandicusQ46958606
Transcription and translation in Archaea: a mosaic of eukaryal and bacterial featuresQ47797051
Structure-Based Genetic Analysis of Hel308a in the Hyperthermophilic Archaeon Sulfolobus islandicus.Q51696664
Independent replication of the plasmids pRN1 and pRN2 in the archaeon Sulfolobus islandicus.Q52963763
Improvement of a Sulfolobus-E. coli shuttle vector for heterologous gene expression in Sulfolobus acidocaldarius.Q54280346
The Sulfolobus-“Caldariella” group: Taxonomy on the basis of the structure of DNA-dependent RNA polymerasesQ55934136
Identification of the Missing Links in Prokaryotic Pentose Oxidation PathwaysQ58296732
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the ThaumarchaeotaQ29618150
Structure-function studies on beta-glycosidase from Sulfolobus solfataricus. Molecular bases of thermostabilityQ30432504
Mutations and rearrangements in the genome of Sulfolobus solfataricus P2.Q33245451
Conjugational genetic exchange in the hyperthermophilic archaeon Sulfolobus acidocaldarius: intragenic recombination with minimal dependence on marker separationQ33699627
pING family of conjugative plasmids from the extremely thermophilic archaeon Sulfolobus islandicus: insights into recombination and conjugation in CrenarchaeotaQ33995069
Characterization of intragenic recombination in a hyperthermophilic archaeon via conjugational DNA exchangeQ34011405
Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacersQ34155448
In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeonQ34169232
Genetics Techniques for Thermococcus kodakarensisQ34304860
A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.Q34322670
Molecular analysis of the UV-inducible pili operon from Sulfolobus acidocaldarius.Q34376227
Archaeal habitats--from the extreme to the ordinaryQ34502659
Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE geneQ34513433
Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systemsQ34536517
Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricusQ34580851
The archaeal XPB protein is a ssDNA-dependent ATPase with a novel partnerQ34655596
Occurrence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruptionQ34674956
Transcriptional regulator-mediated activation of adaptation genes triggers CRISPR de novo spacer acquisitionQ35098083
pTC Plasmids from Sulfolobus Species in the Geothermal Area of Tengchong, China: Genomic Conservation and Naturally-Occurring Variations as a Result of Transposition by Mobile Genetic ElementsQ35334147
CRISPR-Cas Adaptive Immune Systems of the Sulfolobales: Unravelling Their Complexity and DiversityQ35334222
Archaeal extrachromosomal genetic elementsQ35482661
Archeal DNA replication: eukaryal proteins in a bacterial contextQ35550599
Development of a simvastatin selection marker for a hyperthermophilic acidophile, Sulfolobus islandicusQ35665533
Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.Q35860614
Genomic evidence of rapid, global-scale gene flow in a Sulfolobus speciesQ36104560
A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus.Q36120266
Archaeal DNA replication and repairQ36293900
Genetic fidelity under harsh conditions: analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldariusQ36530952
The archaeal Ced system imports DNA.Q36658877
Role of MerH in mercury resistance in the archaeon Sulfolobus solfataricus.Q37007026
Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophyQ37123660
The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA.Q37158180
Genetic tools for Sulfolobus spp.: vectors and first applicationsQ37187490
Genetic analyses in the hyperthermophilic archaeon Sulfolobus islandicusQ37368254
CRISPR-based immune systems of the Sulfolobales: complexity and diversityQ37832252
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and SulfolobalesQ37832278
Archaeal viruses--novel, diverse and enigmaticQ38014381
Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes.Q38077261
Sulfolobus islandicus: a model system for evolutionary genomicsQ38077267
Molecular biology of fuselloviruses and their satellites.Q38190447
Identification of a system required for the functional surface localization of sugar binding proteins with class III signal peptides in Sulfolobus solfataricus.Q38302318
c-Jun binding site identification in K562 cells.Q38333965
Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldariusQ38345844
The archaellum: how Archaea swimQ38362614
DNA repair in hyperthermophilic and hyperradioresistant microorganisms.Q38521849
Harnessing Type I and Type III CRISPR-Cas systems for genome editingQ38667415
A spreadable, non-integrative and high copy number shuttle vector for Sulfolobus solfataricus based on the genetic element pSSVx from Sulfolobus islandicusQ39079704
CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricusQ39094038
Regulation of mercury resistance in the crenarchaeote Sulfolobus solfataricusQ39109875
Structure of an archaeal PCNA1-PCNA2-FEN1 complex: elucidating PCNA subunit and client enzyme specificityQ39114197
Specificity and function of archaeal DNA replication initiator proteinsQ39262235
VapC6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote Sulfolobus solfataricusQ39534053
High spontaneous mutation rate in the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by transposable elementsQ39587443
Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.Q39702688
Cytosine methylation by the SuaI restriction-modification system: implications for genetic fidelity in a hyperthermophilic archaeonQ39791449
Differential antibiotic sensitivity determined by the large ribosomal subunit in thermophilic archaeaQ39841716
The apt/6-Methylpurine Counterselection System and Its Applications in Genetic Studies of the Hyperthermophilic Archaeon Sulfolobus islandicusQ39926734
Disruption of the gene encoding restriction endonuclease SuaI and development of a host-vector system for the thermoacidophilic archaeon Sulfolobus acidocaldariusQ40082236
Shuttle vector-based transformation system for Pyrococcus furiosusQ40527205
Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome.Q41829564
Diverse CRISPR-Cas responses and dramatic cellular DNA changes and cell death in pKEF9-conjugated Sulfolobus speciesQ41862584
Novel RepA-MCM proteins encoded in plasmids pTAU4, pORA1 and pTIK4 from Sulfolobus neozealandicusQ41886114
Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricusQ41898322
Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensisQ41913560
Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus.Q41968713
Genomic comparison of archaeal conjugative plasmids from SulfolobusQ42134029
Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius.Q42200185
Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaeaQ42234411
Transcriptional analysis of the genetic element pSSVx: differential and temporal regulation of gene expression reveals correlation between transcription and replicationQ42412374
A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirusQ42613402
The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virusQ42613854
Flagellar motility and structure in the hyperthermoacidophilic archaeon Sulfolobus solfataricusQ42619847
P433issue4
P304page(s)370-385
P577publication date2017-02-27
P1433published inScience in China. Series C: Life SciencesQ2619480
P1476titleGenetic technologies for extremely thermophilic microorganisms of Sulfolobus, the only genetically tractable genus of crenarchaea
P478volume60